Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002641

Physical Location & Seq

Genomic Coordinates Reverse (-)

5277557 .. 5281930

Gene Structure 4374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG069900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGCCTCCACTGGATTTCCCACTTGAAGGTGTTAAGTTCCCACCTGCATTGCCGGATTATGTTCAACCGGAGAAGCCCAAGATTACGACCCTGCCCAATGGTGTCAAAATAGCCTCTGTGAAGTCAGAGGTACCTACAGCTTCCATAGGTTTATATGTTAATTGTGGTTCAGTCTATGAGACAGCAGAGTCATCTGGAACATCACACCTGCTGGAGCGTATGGCTTTCAAGAGCACGAGAAACCGCAGTCATTTGCGTATTGTGCGGGAGGTGGAGGCCATTGGTGGCAATGTGCAAGCATCAGCTTCTCGGGAGCAGATGAGTTACACCATTACTTCTCTGAAGACTTATGTTCCTGAAATGGTAGAGCTGCTTCTTGACTCGGTTCGGAATCCTGTTTTCCTTGATTGGGAAGTGAATGAGGAGCTTCTCCGGGTGAAAGATGATATTAATGAAGCCTCCAAAAACCCTGAAGCCCTTGTTTTGGAAGCAGTTCACTCTGTTGGTTACAAGGGTGGATTGGCGAATCCACTCTTAGCCCAAGAATCTTCGATTAGTAGACTAGATAGTGAAATTTTGGAGGAATTCGTTGCCGAAAATTATACTGCTCCTAGGATGGTGCTGACTGCTTATGGTGTTGAACATGAGGAACTTTTAAAAATTGCACAACCACTTTTGTCTGATCTTCCCAGTGTCCCTCTTGCTGAGGAGCCAACATCTATGTATACTGGAGGTGACTACCGTTGTCAAGCTGAATCAGGGGATACTCATTTTGCTCTTGCATTTGAACTTCCTGGTGGATGGCTTAGGATGAAGGATGCAATGATTTTGAATGTTCTTCAGATGCTAATGGGAGGAGGTGAATCCTTTTCAACCGGCGGACCTGGAAAAGGGATGAACTCGCGATTATATATTCGTGTGTTGGCTCAAAATCCCGAGGTTAAGTCAATGTCAGCAATCAATAGCATCTACAACAATAGTGCTTTATTTGGCATCCAAGCTTCCACTAGTTCAGATTATGTGACAGAAGCCATTGATATAGCAGCAGATGAGCTTATTGCACTTGCAACACCCGGAGAAGTTGACCTGGTACAGCTAGATCGTGCTAAACAGTCAACGAAGTCTTCCATTCTTATGAATTTGGAATCTAGAGTATGTAAACAATTAGTGCAATTTCTTAATAATAATACCCATATTTTATTTATTCTTGTAGGATCTGTATATATAGGCATCTGGATTTTCTCTAAATGTTATTTTATTACTTTTCATTATGATTCTGTAGATGATTGTTGTAGACGATATTGGGAGACAAATCCTGACGTACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C

Protein Analysis

442

Amino Acids

48.81

Weight (kDa)

4.83

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16	PF00675	37 - 180	8.2e-42	Insulinase (Peptidase family M16)
Peptidase_M16_C	PF05193	189 - 371	2.4e-25	Peptidase M16 inactive domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51980 AT1G51980 AT3G16480
fragaria_vesca	FvH4_1g06540 FvH4_1g06540 FvH4_1g06540 FvH4_6g32600 FvH4_6g32600
malus_domestica	MD02G1068800.v1.1 MD09G1200100.v1.1 MD17G1181200.v1.1
prunus_persica	Prupe.3G056700_v2.0.a1 Prupe.7G216900_v2.0.a1
pyrus_communis	pycom02g05450 pycom09g11770 pycom17g19060
rosa_chinensis	RchiOBHm_Chr2g0092291 RchiOBHm_Chr2g0141051
rosa_laevigata	RLG00000016294 RLG00000019911
rosa_multiflora	Rmu_co8416335.1_g000001 Rmu_sc0003289.1_g000021 Rmu_sc0004769.1_g000017 Rmu_sc0012897.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104250 Rroxscaffold_2G00149290
rosa_rugosa	Rorug02G0024700 Rorug02G0366400
rosa_samantha	Rh2AG070400 Rh2AG417800 Rh2BG069900 Rh2BG427700 Rh2CG071100 Rh2CG356200 Rh2CG404100 Rh2DG068900 Rh2DG437200
rosa_wichuraiana	Rw2G006190 Rw2G034200 Rw2G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	52, 216
AasI	GACNNNNNNGTC	1 cut(s)	187
Acc36I	ACCTGC	2 cut(s)	52, 216
Acc65I	GGTACC	1 cut(s)	130
AccB1I	GGYRCC	1 cut(s)	130
AccI	GTMKAC	3 cut(s)	559, 725, 1294
AccII	CGCG	1 cut(s)	904
AciI	CCGC	3 cut(s)	244, 265, 879
AclWI	GGATC	1 cut(s)	1222
AcsI	RAATTY	3 cut(s)	573, 584, 1138
AcuI	CTGAAG	3 cut(s)	362, 492, 824
AfaI	GTAC	3 cut(s)	132, 1092, 1323
AfiI	CCNNNNNNNGG	4 cut(s)	26, 409, 484, 890
AgsI	TTSAA	7 cut(s)	26, 65, 229, 641, 788, 832, 873
AhlI	ACTAGT	1 cut(s)	1007
AjnI	CCWGG	3 cut(s)	793, 883, 1086
AluBI	AGCT	8 cut(s)	140, 305, 370, 427, 752, 1001, 1054, 1096
AluI	AGCT	8 cut(s)	140, 305, 370, 427, 752, 1001, 1054, 1096
Alw21I	GWGCWC	1 cut(s)	236
Alw26I	GTCTC	2 cut(s)	173, 1301
AlwI	GGATC	1 cut(s)	1222
Ama87I	CYCGRG	2 cut(s)	309, 935
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	2 cut(s)	370, 1043
ApoI	RAATTY	3 cut(s)	573, 584, 1138
AseI	ATTAAT	1 cut(s)	450
Asp700I	GAANNNNTTC	1 cut(s)	492
Asp718I	GGTACC	1 cut(s)	130
AspA2I	CCTAGG	1 cut(s)	611
AspS9I	GGNCC	1 cut(s)	881
AsuC2I	CCSGG	2 cut(s)	434, 1074
AsuHPI	GGTGA	3 cut(s)	448, 746, 872
AvaI	CYCGRG	2 cut(s)	309, 935
AvaII	GGWCC	1 cut(s)	881
AvrII	CCTAGG	1 cut(s)	611
BanI	GGYRCC	1 cut(s)	130
BarI	GAAGNNNNNNTAC	2 cut(s)	357, 389
BauI	CACGAG	1 cut(s)	235
BbsI	GAAGAC	2 cut(s)	350, 1116
Bbv12I	GWGCWC	1 cut(s)	236
BbvCI	CCTCAGC	1 cut(s)	705
BbvI	GCAGC	2 cut(s)	357, 1055
BccI	CCATC	2 cut(s)	610, 795
BciT130I	CCWGG	3 cut(s)	795, 885, 1088
BciVI	GTATCC	1 cut(s)	757
BcnI	CCSGG	2 cut(s)	434, 1074
BcoDI	GTCTC	2 cut(s)	173, 1301
BcuI	ACTAGT	1 cut(s)	1007
BfaI	CTAG	5 cut(s)	563, 612, 1008, 1097, 1149
BfmI	CTRYAG	2 cut(s)	135, 1278
BfuAI	ACCTGC	2 cut(s)	52, 216
BfuI	GTATCC	1 cut(s)	757
BisI	GCNGC	2 cut(s)	371, 1044
BlnI	CCTAGG	1 cut(s)	611
BlsI	GCNGC	2 cut(s)	372, 1045
Bme1390I	CCNGG	5 cut(s)	434, 795, 885, 1074, 1088
Bme18I	GGWCC	1 cut(s)	881
BmeT110I	CYCGRG	2 cut(s)	309, 935
BmgT120I	GGNCC	1 cut(s)	881
BmiI	GGNNCC	2 cut(s)	132, 711
BmrFI	CCNGG	5 cut(s)	434, 795, 885, 1074, 1088
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	6 cut(s)	308, 808, 834, 975, 1002, 1239
BmuI	ACTGGG	1 cut(s)	684
BpiI	GAAGAC	2 cut(s)	350, 1116
BpmI	CTGGAG	2 cut(s)	233, 750
Bpu10I	CCTNAGC	2 cut(s)	705, 806
BpuMI	CCSGG	2 cut(s)	434, 1074
BsaJI	CCNNGG	2 cut(s)	611, 936
BsaWI	WCCGGW	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 409, 484, 890
Bse118I	RCCGGY	1 cut(s)	875
Bse1I	ACTGG	3 cut(s)	15, 690, 733
Bse3DI	GCAATG	3 cut(s)	47, 295, 828
BseBI	CCWGG	3 cut(s)	795, 885, 1088
BseDI	CCNNGG	2 cut(s)	611, 936
BseGI	GGATG	6 cut(s)	621, 806, 816, 823, 900, 993
BseLI	CCNNNNNNNGG	4 cut(s)	26, 409, 484, 890
BseMI	GCAATG	3 cut(s)	47, 295, 828
BseMII	CTCAG	1 cut(s)	696
BseNI	ACTGG	3 cut(s)	15, 690, 733
BseRI	GAGGAG	3 cut(s)	437, 722, 870
BseXI	GCAGC	2 cut(s)	357, 1055
Bsh1236I	CGCG	1 cut(s)	904
BshFI	GGCC	1 cut(s)	278
BshNI	GGYRCC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	236
BsiHKCI	CYCGRG	2 cut(s)	309, 935
BsiSI	CCGG	5 cut(s)	53, 68, 433, 876, 1074
BslFI	GGGAC	1 cut(s)	680
BslI	CCNNNNNNNGG	4 cut(s)	26, 409, 484, 890
BsmAI	GTCTC	2 cut(s)	173, 1301
BsmFI	GGGAC	1 cut(s)	680
BsnI	GGCC	1 cut(s)	278
BsoBI	CYCGRG	2 cut(s)	309, 935
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	3 cut(s)	682, 1099, 1214
Bsp68I	TCGCGA	1 cut(s)	904
BspACI	CCGC	3 cut(s)	244, 265, 879
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	697
BspFNI	CGCG	1 cut(s)	904
BspLI	GGNNCC	2 cut(s)	132, 711
BspMI	ACCTGC	2 cut(s)	52, 216
BspPI	GGATC	1 cut(s)	1222
BspT107I	GGYRCC	1 cut(s)	130
BsrDI	GCAATG	3 cut(s)	47, 295, 828
BsrFI	RCCGGY	1 cut(s)	875
BsrI	ACTGG	3 cut(s)	15, 690, 733
BssAI	RCCGGY	1 cut(s)	875
BssECI	CCNNGG	2 cut(s)	611, 936
BssMI	GATC	3 cut(s)	682, 1099, 1214
BssNAI	GTATAC	1 cut(s)	726
BssSI	CACGAG	1 cut(s)	235
BssT1I	CCWWGG	1 cut(s)	611
Bst1107I	GTATAC	1 cut(s)	726
Bst2BI	CACGAG	1 cut(s)	235
Bst2UI	CCWGG	3 cut(s)	795, 885, 1088
Bst4CI	ACNGT	2 cut(s)	743, 1113
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	3 cut(s)	535, 705, 806
BstENI	CCTNNNNNAGG	1 cut(s)	888
BstF5I	GGATG	6 cut(s)	621, 806, 816, 823, 900, 993
BstFNI	CGCG	1 cut(s)	904
BstKTI	GATC	3 cut(s)	685, 1102, 1217
BstMAI	GTCTC	2 cut(s)	173, 1301
BstMBI	GATC	3 cut(s)	682, 1099, 1214
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	3 cut(s)	795, 885, 1088
BstSCI	CCNGG	5 cut(s)	432, 793, 883, 1072, 1086
BstSFI	CTRYAG	2 cut(s)	135, 1278
BstUI	CGCG	1 cut(s)	904
BstV1I	GCAGC	2 cut(s)	357, 1055
BstV2I	GAAGAC	2 cut(s)	350, 1116
BstX2I	RGATCY	1 cut(s)	1214
BstYI	RGATCY	1 cut(s)	1214
BstZ17I	GTATAC	1 cut(s)	726
BsuI	GTATCC	1 cut(s)	757
BsuRI	GGCC	1 cut(s)	278
BtsCI	GGATG	6 cut(s)	621, 806, 816, 823, 900, 993
BtsIMutI	CAGTG	2 cut(s)	8, 697
BtuMI	TCGCGA	1 cut(s)	904
BveI	ACCTGC	2 cut(s)	52, 216
Cac8I	GCNNGC	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	875
Cfr13I	GGNCC	1 cut(s)	881
CsiI	ACCWGGT	1 cut(s)	1086
Csp6I	GTAC	3 cut(s)	131, 1091, 1322
CspCI	CAANNNNNGTGG	2 cut(s)	30, 65
CviAII	CATG	1 cut(s)	644
CviQI	GTAC	3 cut(s)	131, 1091, 1322
DdeI	CTNAG	3 cut(s)	535, 705, 806
DpnI	GATC	3 cut(s)	684, 1101, 1216
DpnII	GATC	3 cut(s)	682, 1099, 1214
DraI	TTTAAA	1 cut(s)	657
DrdI	GACNNNNNNGTC	1 cut(s)	187
DseDI	GACNNNNNNGTC	1 cut(s)	187
EciI	GGCGGA	1 cut(s)	894
Eco130I	CCWWGG	1 cut(s)	611
Eco47I	GGWCC	1 cut(s)	881
Eco57I	CTGAAG	3 cut(s)	362, 492, 824
Eco88I	CYCGRG	2 cut(s)	309, 935
EcoNI	CCTNNNNNAGG	1 cut(s)	888
EcoRI	GAATTC	1 cut(s)	584
EcoRII	CCWGG	3 cut(s)	793, 883, 1086
EcoT14I	CCWWGG	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	611
FaeI	CATG	1 cut(s)	647
FaqI	GGGAC	1 cut(s)	680
FatI	CATG	1 cut(s)	643
FauI	CCCGC	1 cut(s)	258
FblI	GTMKAC	3 cut(s)	559, 725, 1294
Fnu4HI	GCNGC	2 cut(s)	371, 1044
FokI	GGATG	6 cut(s)	628, 813, 823, 830, 907, 980
Fsp4HI	GCNGC	2 cut(s)	371, 1044
FspBI	CTAG	5 cut(s)	563, 612, 1008, 1097, 1149
GluI	GCNGC	2 cut(s)	371, 1044
GsuI	CTGGAG	2 cut(s)	233, 750
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	5 cut(s)	53, 68, 433, 876, 1074
Hin1II	CATG	1 cut(s)	647
HincII	GTYRAC	2 cut(s)	1084, 1116
HindII	GTYRAC	2 cut(s)	1084, 1116
HindIII	AAGCTT	1 cut(s)	999
HinfI	GANTC	9 cut(s)	188, 380, 391, 526, 545, 755, 863, 1145, 1274
HpaII	CCGG	5 cut(s)	53, 68, 433, 876, 1074
HphI	GGTGA	3 cut(s)	448, 746, 872
Hpy166II	GTNNAC	7 cut(s)	496, 560, 726, 1084, 1116, 1160, 1295
Hpy188I	TCNGA	6 cut(s)	127, 342, 390, 682, 843, 1015
Hpy8I	GTNNAC	7 cut(s)	496, 560, 726, 1084, 1116, 1160, 1295
HpyAV	CCTTC	2 cut(s)	20, 808
HpyCH4III	ACNGT	2 cut(s)	743, 1113
HpyCH4IV	ACGT	1 cut(s)	1320
HpyCH4V	TGCA	8 cut(s)	47, 295, 665, 782, 821, 1061, 1067, 1171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	3 cut(s)	535, 705, 806
HpySE526I	ACGT	1 cut(s)	1320
Hsp92II	CATG	1 cut(s)	647
KpnI	GGTACC	1 cut(s)	134
Kzo9I	GATC	3 cut(s)	682, 1099, 1214
LmnI	GCTCC	5 cut(s)	214, 313, 424, 613, 709
Lsp1109I	GCAGC	2 cut(s)	357, 1055
LweI	GCATC	6 cut(s)	308, 808, 834, 975, 1002, 1239
MabI	ACCWGGT	1 cut(s)	1086
MaeI	CTAG	5 cut(s)	563, 612, 1008, 1097, 1149
MaeII	ACGT	1 cut(s)	1320
MaeIII	GTNAC	4 cut(s)	323, 506, 734, 1021
MalI	GATC	3 cut(s)	684, 1101, 1216
MboI	GATC	3 cut(s)	682, 1099, 1214
MboII	GAAGA	5 cut(s)	355, 540, 677, 830, 1116
MflI	RGATCY	1 cut(s)	1214
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	8 cut(s)	160, 573, 584, 598, 660, 1138, 1163, 1172
MlyI	GAGTC	2 cut(s)	197, 374
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	6 cut(s)	33, 159, 450, 656, 942, 1179
MslI	CAYNNNNRTG	1 cut(s)	1133
MspI	CCGG	5 cut(s)	53, 68, 433, 876, 1074
MspR9I	CCNGG	5 cut(s)	434, 795, 885, 1074, 1088
MvaI	CCWGG	3 cut(s)	795, 885, 1088
MvnI	CGCG	1 cut(s)	904
MwoI	GCNNNNNNNGC	1 cut(s)	262
NciI	CCSGG	2 cut(s)	434, 1074
NdeII	GATC	3 cut(s)	682, 1099, 1214
NlaIII	CATG	1 cut(s)	647
NlaIV	GGNNCC	2 cut(s)	132, 711
NmuCI	GTSAC	2 cut(s)	734, 1021
NruI	TCGCGA	1 cut(s)	904
PaqCI	CACCTGC	2 cut(s)	52, 216
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	7 cut(s)	391, 526, 545, 755, 863, 1145, 1274
PkrI	GCNGC	2 cut(s)	372, 1045
PleI	GAGTC	2 cut(s)	196, 374
PpsI	GAGTC	2 cut(s)	196, 374
PshBI	ATTAAT	1 cut(s)	450
Psp6I	CCWGG	3 cut(s)	793, 883, 1086
PspGI	CCWGG	3 cut(s)	793, 883, 1086
PspN4I	GGNNCC	2 cut(s)	132, 711
PspPI	GGNCC	1 cut(s)	881
PsuI	RGATCY	1 cut(s)	1214
RruI	TCGCGA	1 cut(s)	904
RsaI	GTAC	3 cut(s)	132, 1092, 1323
RsaNI	GTAC	3 cut(s)	131, 1091, 1322
RseI	CAYNNNNRTG	1 cut(s)	1133
SaqAI	TTAA	6 cut(s)	33, 159, 450, 656, 942, 1179
SatI	GCNGC	2 cut(s)	371, 1044
Sau3AI	GATC	3 cut(s)	682, 1099, 1214
Sau96I	GGNCC	1 cut(s)	881
SchI	GAGTC	2 cut(s)	197, 374
ScrFI	CCNGG	5 cut(s)	434, 795, 885, 1074, 1088
SduI	GDGCHC	1 cut(s)	236
SexAI	ACCWGGT	1 cut(s)	1086
SfaNI	GCATC	6 cut(s)	308, 808, 834, 975, 1002, 1239
SfcI	CTRYAG	2 cut(s)	135, 1278
SinI	GGWCC	1 cut(s)	881
SmiMI	CAYNNNNRTG	1 cut(s)	1133
SpeI	ACTAGT	1 cut(s)	1007
Sse9I	AATT	8 cut(s)	160, 573, 584, 598, 660, 1138, 1163, 1172
SsiI	CCGC	3 cut(s)	244, 265, 879
SspMI	CTAG	5 cut(s)	563, 612, 1008, 1097, 1149
StyD4I	CCNGG	5 cut(s)	432, 793, 883, 1072, 1086
StyI	CCWWGG	1 cut(s)	611
TaaI	ACNGT	2 cut(s)	743, 1113
TaiI	ACGT	1 cut(s)	1323
TaqI	TCGA	1 cut(s)	551
TasI	AATT	8 cut(s)	160, 573, 584, 598, 660, 1138, 1163, 1172
TfiI	GAWTC	7 cut(s)	391, 526, 545, 755, 863, 1145, 1274
Tru1I	TTAA	6 cut(s)	33, 159, 450, 656, 942, 1179
Tru9I	TTAA	6 cut(s)	33, 159, 450, 656, 942, 1179
TscAI	CASTG	2 cut(s)	15, 697
TseFI	GTSAC	2 cut(s)	734, 1021
TseI	GCWGC	2 cut(s)	370, 1043
Tsp45I	GTSAC	2 cut(s)	734, 1021
TspDTI	ATGAA	5 cut(s)	468, 827, 911, 1151, 1256
TspRI	CASTG	2 cut(s)	15, 697
VpaK11BI	GGWCC	1 cut(s)	881
VspI	ATTAAT	1 cut(s)	450
XagI	CCTNNNNNAGG	1 cut(s)	888
XapI	RAATTY	3 cut(s)	573, 584, 1138
XbaI	TCTAGA	1 cut(s)	1148
XmaJI	CCTAGG	1 cut(s)	611
XmiI	GTMKAC	3 cut(s)	559, 725, 1294
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	5 cut(s)	563, 612, 1008, 1097, 1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.