Rorug02G0366400

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002641
Physical Location & Seq
Forward (+)
46593951 .. 46594241
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0366400.1

Sequence Viewer

Length: 291 bp
ATGTCGTCCTCCGCTGCTTCTCGATTGGGTTTGGGGATAAGGACTGCTTCTTCCTCCACCGCTAGCAAAATCGTGGAGGCACAATGCCACATTCTAAGGGCCACCGACCGGAAGGACCGCCACAGCAAGGTTTGCACCACCAAAGGCCCCAGGGACCGCAGCATCCGGCTCGTCGCCCACACCGCCATTCAATTCTACGACATGCAGGACCGGCTTGGATACGACCAGCCTGGCAAGGTCGTCGATTGGCTAATCAAGATAGCCAAGGCCGCAATCAACGAGCTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0005746 GO:0005750 GO:0005758 GO:0005759 GO:0005773 GO:0005774 GO:0006508 GO:0006605 GO:0006626 GO:0006627 GO:0006807 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016485 GO:0016787 GO:0017076 GO:0019538 GO:0019866 GO:0019867 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031970 GO:0031974 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034982 GO:0035639 GO:0036094 GO:0042221 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0045275 GO:0046872 GO:0046907 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070011 GO:0070013 GO:0070069 GO:0070469 GO:0070585 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1902494 GO:1990204
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C

Protein Analysis

96

Amino Acids

10.6

Weight (kDa)

9.75

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 36 - 95 6.2e-27 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 12, 60, 118, 157, 183, 270
AfiI CCNNNNNNNGG 2 cut(s) 108, 127
AgsI TTSAA 1 cut(s) 191
AjnI CCWGG 2 cut(s) 149, 229
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
AoxI GGCC 3 cut(s) 99, 145, 267
ApeKI GCWGC 2 cut(s) 14, 159
AspS9I GGNCC 5 cut(s) 99, 115, 146, 154, 208
AsuNHI GCTAGC 1 cut(s) 62
AvaII GGWCC 3 cut(s) 115, 154, 208
BbvI GCAGC 1 cut(s) 171
BcgI CGANNNNNNTGC 4 cut(s) 151, 185, 223, 257
BciT130I CCWGG 2 cut(s) 151, 231
BciVI GTATCC 1 cut(s) 212
BfaI CTAG 2 cut(s) 63, 289
BfuI GTATCC 1 cut(s) 212
BisI GCNGC 3 cut(s) 15, 160, 270
BlsI GCNGC 3 cut(s) 16, 161, 271
Bme1390I CCNGG 2 cut(s) 151, 231
Bme18I GGWCC 3 cut(s) 115, 154, 208
BmgT120I GGNCC 5 cut(s) 99, 115, 146, 154, 208
BmiI GGNNCC 2 cut(s) 148, 155
BmrFI CCNGG 2 cut(s) 151, 231
BmsI GCATC 1 cut(s) 171
BmtI GCTAGC 1 cut(s) 66
BsaJI CCNNGG 3 cut(s) 149, 150, 264
BsaWI WCCGGW 1 cut(s) 108
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 127
Bse118I RCCGGY 1 cut(s) 210
BseBI CCWGG 2 cut(s) 151, 231
BseDI CCNNGG 3 cut(s) 149, 150, 264
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 108, 127
BseXI GCAGC 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 3 cut(s) 101, 147, 269
BsiEI CGRYCG 1 cut(s) 109
BsiSI CCGG 3 cut(s) 109, 166, 211
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 108, 127
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 3 cut(s) 101, 147, 269
BspACI CCGC 6 cut(s) 12, 60, 118, 157, 183, 270
BspANI GGCC 3 cut(s) 101, 147, 269
BspLI GGNNCC 2 cut(s) 148, 155
BspOI GCTAGC 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 149, 150, 264
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 151, 231
BstAPI GCANNNNNTGC 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 162
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 4 cut(s) 132, 182, 211, 269
BstNI CCWGG 2 cut(s) 151, 231
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 2 cut(s) 149, 229
BstV1I GCAGC 1 cut(s) 171
BsuI GTATCC 1 cut(s) 212
BsuRI GGCC 3 cut(s) 101, 147, 269
BtsCI GGATG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 5 cut(s) 99, 115, 146, 154, 208
CviAII CATG 1 cut(s) 202
CviJI RGCY 9 cut(s) 101, 147, 169, 214, 229, 250, 263, 269, 283
CviKI_1 RGCY 9 cut(s) 101, 147, 169, 214, 229, 250, 263, 269, 283
DdeI CTNAG 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 264
Eco47I GGWCC 3 cut(s) 115, 154, 208
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 149, 229
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 1 cut(s) 205
FaiI YATR 1 cut(s) 203
FalI AAGNNNNNCTT 2 cut(s) 31, 63
FaqI GGGAC 1 cut(s) 167
FatI CATG 1 cut(s) 201
Fnu4HI GCNGC 3 cut(s) 15, 160, 270
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 15, 160, 270
FspBI CTAG 2 cut(s) 63, 289
GluI GCNGC 3 cut(s) 15, 160, 270
HaeIII GGCC 3 cut(s) 101, 147, 269
HapII CCGG 3 cut(s) 109, 166, 211
Hin1II CATG 1 cut(s) 205
HpaII CCGG 3 cut(s) 109, 166, 211
Hpy188III TCNNGA 2 cut(s) 21, 256
Hpy99I CGWCG 2 cut(s) 176, 245
HpyAV CCTTC 1 cut(s) 106
HpyCH4V TGCA 2 cut(s) 135, 205
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 182, 211, 269
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 1 cut(s) 205
LpnPI CCDG 9 cut(s) 122, 136, 163, 179, 191, 216, 224, 239, 243
Lsp1109I GCAGC 1 cut(s) 171
LweI GCATC 1 cut(s) 171
MaeI CTAG 2 cut(s) 63, 289
MboII GAAGA 1 cut(s) 42
MluCI AATT 1 cut(s) 191
MnlI CCTC 3 cut(s) 19, 64, 70
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 3 cut(s) 109, 166, 211
MspR9I CCNGG 2 cut(s) 151, 231
MvaI CCWGG 2 cut(s) 151, 231
MwoI GCNNNNNNNGC 4 cut(s) 132, 182, 211, 269
NheI GCTAGC 1 cut(s) 62
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 2 cut(s) 148, 155
NspI RCATGY 1 cut(s) 205
PasI CCCWGGG 1 cut(s) 150
PkrI GCNGC 3 cut(s) 16, 161, 271
Psp6I CCWGG 2 cut(s) 149, 229
PspGI CCWGG 2 cut(s) 149, 229
PspN4I GGNNCC 2 cut(s) 148, 155
PspPI GGNCC 5 cut(s) 99, 115, 146, 154, 208
SatI GCNGC 3 cut(s) 15, 160, 270
Sau96I GGNCC 5 cut(s) 99, 115, 146, 154, 208
ScrFI CCNGG 2 cut(s) 151, 231
SetI ASST 3 cut(s) 132, 240, 285
SfaNI GCATC 1 cut(s) 171
SinI GGWCC 3 cut(s) 115, 154, 208
Sse9I AATT 1 cut(s) 191
SsiI CCGC 6 cut(s) 12, 60, 118, 157, 183, 270
SspMI CTAG 2 cut(s) 63, 289
StyD4I CCNGG 2 cut(s) 149, 229
StyI CCWWGG 1 cut(s) 264
TaqI TCGA 2 cut(s) 22, 243
TasI AATT 1 cut(s) 191
TauI GCSGC 1 cut(s) 272
TseI GCWGC 2 cut(s) 14, 159
VpaK11BI GGWCC 3 cut(s) 115, 154, 208
XceI RCATGY 1 cut(s) 205
XspI CTAG 2 cut(s) 63, 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.