Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002641

Physical Location & Seq

Genomic Coordinates Reverse (-)

5842276 .. 5846649

Gene Structure 4374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG071100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGCTTTCAAGAGCACGAGAAACCGCAGTCATTTGCGTATTGTGCGGGAGGTGGAGGCCATTGGTGGCAATGTGCAAGCATCAGCTTCTCGGGAGCAGATGAGTTACACCATTACTTCTCTGAAGACTTATGTTCCTGAAATGGTAGAGCTGCTTCTTGACTCGGTTCGGAATCCTGTTTTCCTTGATTGGGAAGTGAATGAGGAGCTTCTCCGGGTGAAAGATGATATTAATGAAGCCTCCAAAAACCCTGAAGCCCTTGTTTTGGAAGCAGTTCACTCTGTTGGTTACAAGGGTGGATTGGCGAATCCACTCTTAGCCCAAGAATCTTCGATTAGTAGACTAGATAGTGAAATTTTGGAGGAATTCGTTGCCGAAAATTATACTGCTCCTAGGATGGTGCTGACTGCTTATGGTGTTGAACATGAGGAACTTTTAAAAATTGCACAACCACTTTTGTCTGATCTTCCCAGTGTCCCTCTTGCTGAGGAGCCAACATCTATGTATACTGGAGGTGACTACCGTTGTCAAGCTGAATCAGGGGATACTCATTTTGCTCTTGCATTTGAACTTCCTGGTGGATGGCTTAGGATGAAGGATGCAATGATTTTGAATGTTCTTCAGATGCTAATGGGAGGAGGTGAATCCTTTTCAACCGGCGGACCTGGAAAAGGGATGAACTCGCGATTATATATTCGTGTGTTGGCTCAAAATCCCGAGGTTAAGTCAATGTCAGCAATCAATAGCATCTACAACAATAGTGCTTTATTTGGCATCCAAGCTTCCACTAGTTCAGATTATGTGACAGAAGCCATTGATATAGCAGCAGATGAGCTTATTGCACTTGCAACACCCGGAGAAGTTGACCTGGTACAGCTAGATCGTGCTAAACAGTCAACGAAGTCTTCCATTCTTATGAATTTGGAATCTAGAATGATTGTTGTAGACGATATTGGGAGACAAATCCTGACGTACAATGAATGGAAATTGGAGCAGCTCATGAAGGCTGTAGATGAGGTTTCTTTGGAGGATATTACTTCAACTGCTCAAAAGCTTTTATCGACCCCTCTTACAATGGCATCATATGGAGATGTCACTAAAGTCCCACGCTATGATTCAGTCAGCCAAAGATTTTCCCTCTCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C

Protein Analysis

382

Amino Acids

42.1

Weight (kDa)

4.72

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16	PF00675	1 - 107	5.5e-26	Insulinase (Peptidase family M16)
Peptidase_M16_C	PF05193	116 - 298	1.7e-25	Peptidase M16 inactive domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51980 AT1G51980 AT3G16480
fragaria_vesca	FvH4_1g06540 FvH4_1g06540 FvH4_1g06540 FvH4_6g32600 FvH4_6g32600
malus_domestica	MD02G1068800.v1.1 MD09G1200100.v1.1 MD17G1181200.v1.1
prunus_persica	Prupe.3G056700_v2.0.a1 Prupe.7G216900_v2.0.a1
pyrus_communis	pycom02g05450 pycom09g11770 pycom17g19060
rosa_chinensis	RchiOBHm_Chr2g0092291 RchiOBHm_Chr2g0141051
rosa_laevigata	RLG00000016294 RLG00000019911
rosa_multiflora	Rmu_co8416335.1_g000001 Rmu_sc0003289.1_g000021 Rmu_sc0004769.1_g000017 Rmu_sc0012897.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104250 Rroxscaffold_2G00149290
rosa_rugosa	Rorug02G0024700 Rorug02G0366400
rosa_samantha	Rh2AG070400 Rh2AG417800 Rh2BG069900 Rh2BG427700 Rh2CG071100 Rh2CG356200 Rh2CG404100 Rh2DG068900 Rh2DG437200
rosa_wichuraiana	Rw2G006190 Rw2G034200 Rw2G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	340, 506, 945
AccII	CGCG	1 cut(s)	685
AciI	CCGC	3 cut(s)	25, 46, 660
AcsI	RAATTY	3 cut(s)	354, 365, 919
AcuI	CTGAAG	3 cut(s)	143, 273, 605
AfaI	GTAC	2 cut(s)	873, 974
AfiI	CCNNNNNNNGG	3 cut(s)	190, 265, 671
AgsI	TTSAA	6 cut(s)	10, 422, 569, 613, 654, 1041
AhlI	ACTAGT	1 cut(s)	788
AjnI	CCWGG	3 cut(s)	574, 664, 867
AluBI	AGCT	9 cut(s)	86, 151, 208, 533, 782, 835, 877, 997, 1054
AluI	AGCT	9 cut(s)	86, 151, 208, 533, 782, 835, 877, 997, 1054
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	952
Ama87I	CYCGRG	2 cut(s)	90, 716
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	3 cut(s)	151, 824, 994
ApoI	RAATTY	3 cut(s)	354, 365, 919
AseI	ATTAAT	1 cut(s)	231
Asp700I	GAANNNNTTC	1 cut(s)	273
AspA2I	CCTAGG	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	662
AsuC2I	CCSGG	2 cut(s)	215, 855
AsuHPI	GGTGA	3 cut(s)	229, 527, 653
AvaI	CYCGRG	2 cut(s)	90, 716
AvaII	GGWCC	1 cut(s)	662
AvrII	CCTAGG	1 cut(s)	392
BarI	GAAGNNNNNNTAC	2 cut(s)	138, 170
BauI	CACGAG	1 cut(s)	16
BbsI	GAAGAC	2 cut(s)	131, 897
Bbv12I	GWGCWC	1 cut(s)	17
BbvCI	CCTCAGC	1 cut(s)	486
BbvI	GCAGC	3 cut(s)	138, 836, 1006
BccI	CCATC	2 cut(s)	391, 576
BciT130I	CCWGG	3 cut(s)	576, 666, 869
BciVI	GTATCC	1 cut(s)	538
BcnI	CCSGG	2 cut(s)	215, 855
BcoDI	GTCTC	1 cut(s)	952
BcuI	ACTAGT	1 cut(s)	788
BfaI	CTAG	5 cut(s)	344, 393, 789, 878, 930
BfmI	CTRYAG	1 cut(s)	1008
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	3 cut(s)	152, 825, 995
BlnI	CCTAGG	1 cut(s)	392
BlsI	GCNGC	3 cut(s)	153, 826, 996
Bme1390I	CCNGG	5 cut(s)	215, 576, 666, 855, 869
Bme18I	GGWCC	1 cut(s)	662
BmeT110I	CYCGRG	2 cut(s)	90, 716
BmgT120I	GGNCC	1 cut(s)	662
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	5 cut(s)	215, 576, 666, 855, 869
BmrI	ACTGGG	1 cut(s)	465
BmsI	GCATC	6 cut(s)	89, 589, 615, 756, 783, 1088
BmuI	ACTGGG	1 cut(s)	465
BpiI	GAAGAC	2 cut(s)	131, 897
BpmI	CTGGAG	1 cut(s)	531
Bpu10I	CCTNAGC	2 cut(s)	486, 587
BpuMI	CCSGG	2 cut(s)	215, 855
BsaJI	CCNNGG	2 cut(s)	392, 717
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 265, 671
Bse118I	RCCGGY	1 cut(s)	656
Bse1I	ACTGG	2 cut(s)	471, 514
Bse3DI	GCAATG	2 cut(s)	76, 609
BseBI	CCWGG	3 cut(s)	576, 666, 869
BseDI	CCNNGG	2 cut(s)	392, 717
BseGI	GGATG	6 cut(s)	402, 587, 597, 604, 681, 774
BseLI	CCNNNNNNNGG	3 cut(s)	190, 265, 671
BseMI	GCAATG	2 cut(s)	76, 609
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	2 cut(s)	471, 514
BseRI	GAGGAG	3 cut(s)	218, 503, 651
BseXI	GCAGC	3 cut(s)	138, 836, 1006
Bsh1236I	CGCG	1 cut(s)	685
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	17
BsiHKCI	CYCGRG	2 cut(s)	90, 716
BsiSI	CCGG	3 cut(s)	214, 657, 855
BslFI	GGGAC	2 cut(s)	461, 1088
BslI	CCNNNNNNNGG	3 cut(s)	190, 265, 671
BsmAI	GTCTC	1 cut(s)	952
BsmFI	GGGAC	2 cut(s)	461, 1088
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	2 cut(s)	90, 716
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	463, 880
Bsp68I	TCGCGA	1 cut(s)	685
BspACI	CCGC	3 cut(s)	25, 46, 660
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	478
BspFNI	CGCG	1 cut(s)	685
BspHI	TCATGA	1 cut(s)	999
BspLI	GGNNCC	1 cut(s)	492
BsrDI	GCAATG	2 cut(s)	76, 609
BsrFI	RCCGGY	1 cut(s)	656
BsrI	ACTGG	2 cut(s)	471, 514
BssAI	RCCGGY	1 cut(s)	656
BssECI	CCNNGG	2 cut(s)	392, 717
BssMI	GATC	2 cut(s)	463, 880
BssNAI	GTATAC	1 cut(s)	507
BssSI	CACGAG	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	392
Bst1107I	GTATAC	1 cut(s)	507
Bst2BI	CACGAG	1 cut(s)	16
Bst2UI	CCWGG	3 cut(s)	576, 666, 869
Bst4CI	ACNGT	2 cut(s)	524, 894
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	3 cut(s)	316, 486, 587
BstENI	CCTNNNNNAGG	1 cut(s)	669
BstF5I	GGATG	6 cut(s)	402, 587, 597, 604, 681, 774
BstFNI	CGCG	1 cut(s)	685
BstKTI	GATC	2 cut(s)	466, 883
BstMAI	GTCTC	1 cut(s)	952
BstMBI	GATC	2 cut(s)	463, 880
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	3 cut(s)	576, 666, 869
BstSCI	CCNGG	5 cut(s)	213, 574, 664, 853, 867
BstSFI	CTRYAG	1 cut(s)	1008
BstUI	CGCG	1 cut(s)	685
BstV1I	GCAGC	3 cut(s)	138, 836, 1006
BstV2I	GAAGAC	2 cut(s)	131, 897
BstZ17I	GTATAC	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	6 cut(s)	402, 587, 597, 604, 681, 774
BtsIMutI	CAGTG	1 cut(s)	478
BtuMI	TCGCGA	1 cut(s)	685
Cac8I	GCNNGC	1 cut(s)	78
CciI	TCATGA	1 cut(s)	999
Cfr10I	RCCGGY	1 cut(s)	656
Cfr13I	GGNCC	1 cut(s)	662
CsiI	ACCWGGT	1 cut(s)	867
Csp6I	GTAC	2 cut(s)	872, 973
CviAII	CATG	2 cut(s)	425, 1000
CviQI	GTAC	2 cut(s)	872, 973
DdeI	CTNAG	3 cut(s)	316, 486, 587
DpnI	GATC	2 cut(s)	465, 882
DpnII	GATC	2 cut(s)	463, 880
DraI	TTTAAA	1 cut(s)	438
EciI	GGCGGA	1 cut(s)	675
Eco130I	CCWWGG	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	662
Eco57I	CTGAAG	3 cut(s)	143, 273, 605
Eco88I	CYCGRG	2 cut(s)	90, 716
EcoNI	CCTNNNNNAGG	1 cut(s)	669
EcoRI	GAATTC	1 cut(s)	365
EcoRII	CCWGG	3 cut(s)	574, 664, 867
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	2 cut(s)	428, 1003
FaqI	GGGAC	2 cut(s)	461, 1088
FatI	CATG	2 cut(s)	424, 999
FauI	CCCGC	1 cut(s)	39
FauNDI	CATATG	1 cut(s)	1084
FblI	GTMKAC	3 cut(s)	340, 506, 945
Fnu4HI	GCNGC	3 cut(s)	152, 825, 995
FokI	GGATG	6 cut(s)	409, 594, 604, 611, 688, 761
Fsp4HI	GCNGC	3 cut(s)	152, 825, 995
FspBI	CTAG	5 cut(s)	344, 393, 789, 878, 930
GluI	GCNGC	3 cut(s)	152, 825, 995
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	3 cut(s)	214, 657, 855
Hin1II	CATG	2 cut(s)	428, 1003
HincII	GTYRAC	2 cut(s)	865, 897
HindII	GTYRAC	2 cut(s)	865, 897
HindIII	AAGCTT	2 cut(s)	780, 1052
HinfI	GANTC	8 cut(s)	161, 172, 307, 326, 536, 644, 926, 1115
HpaII	CCGG	3 cut(s)	214, 657, 855
HphI	GGTGA	3 cut(s)	229, 527, 653
Hpy166II	GTNNAC	6 cut(s)	277, 341, 507, 865, 897, 946
Hpy188I	TCNGA	5 cut(s)	123, 171, 463, 624, 796
Hpy188III	TCNNGA	9 cut(s)	10, 92, 137, 158, 684, 716, 930, 967, 1000
Hpy8I	GTNNAC	6 cut(s)	277, 341, 507, 865, 897, 946
HpyAV	CCTTC	2 cut(s)	589, 997
HpyCH4III	ACNGT	2 cut(s)	524, 894
HpyCH4IV	ACGT	1 cut(s)	971
HpyCH4V	TGCA	6 cut(s)	76, 446, 563, 602, 842, 848
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	3 cut(s)	316, 486, 587
HpySE526I	ACGT	1 cut(s)	971
Hsp92II	CATG	2 cut(s)	428, 1003
Kzo9I	GATC	2 cut(s)	463, 880
LmnI	GCTCC	5 cut(s)	94, 205, 394, 490, 991
Lsp1109I	GCAGC	3 cut(s)	138, 836, 1006
LweI	GCATC	6 cut(s)	89, 589, 615, 756, 783, 1088
MabI	ACCWGGT	1 cut(s)	867
MaeI	CTAG	5 cut(s)	344, 393, 789, 878, 930
MaeII	ACGT	1 cut(s)	971
MaeIII	GTNAC	5 cut(s)	104, 287, 515, 802, 1093
MalI	GATC	2 cut(s)	465, 882
MboI	GATC	2 cut(s)	463, 880
MboII	GAAGA	5 cut(s)	136, 321, 458, 611, 897
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	6 cut(s)	354, 365, 379, 441, 919, 986
MlyI	GAGTC	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	3 cut(s)	231, 437, 723
MslI	CAYNNNNRTG	1 cut(s)	914
MspI	CCGG	3 cut(s)	214, 657, 855
MspR9I	CCNGG	5 cut(s)	215, 576, 666, 855, 869
MvaI	CCWGG	3 cut(s)	576, 666, 869
MvnI	CGCG	1 cut(s)	685
MwoI	GCNNNNNNNGC	1 cut(s)	43
NciI	CCSGG	2 cut(s)	215, 855
NdeI	CATATG	1 cut(s)	1084
NdeII	GATC	2 cut(s)	463, 880
NlaIII	CATG	2 cut(s)	428, 1003
NlaIV	GGNNCC	1 cut(s)	492
NmuCI	GTSAC	3 cut(s)	515, 802, 1093
NruI	TCGCGA	1 cut(s)	685
PagI	TCATGA	1 cut(s)	999
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	7 cut(s)	172, 307, 326, 536, 644, 926, 1115
PkrI	GCNGC	3 cut(s)	153, 826, 996
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PshBI	ATTAAT	1 cut(s)	231
Psp6I	CCWGG	3 cut(s)	574, 664, 867
PspGI	CCWGG	3 cut(s)	574, 664, 867
PspN4I	GGNNCC	1 cut(s)	492
PspPI	GGNCC	1 cut(s)	662
RruI	TCGCGA	1 cut(s)	685
RsaI	GTAC	2 cut(s)	873, 974
RsaNI	GTAC	2 cut(s)	872, 973
RseI	CAYNNNNRTG	1 cut(s)	914
SaqAI	TTAA	3 cut(s)	231, 437, 723
SatI	GCNGC	3 cut(s)	152, 825, 995
Sau3AI	GATC	2 cut(s)	463, 880
Sau96I	GGNCC	1 cut(s)	662
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	5 cut(s)	215, 576, 666, 855, 869
SduI	GDGCHC	1 cut(s)	17
SexAI	ACCWGGT	1 cut(s)	867
SfaNI	GCATC	6 cut(s)	89, 589, 615, 756, 783, 1088
SfcI	CTRYAG	1 cut(s)	1008
SinI	GGWCC	1 cut(s)	662
SmiMI	CAYNNNNRTG	1 cut(s)	914
SpeI	ACTAGT	1 cut(s)	788
Sse9I	AATT	6 cut(s)	354, 365, 379, 441, 919, 986
SsiI	CCGC	3 cut(s)	25, 46, 660
SspMI	CTAG	5 cut(s)	344, 393, 789, 878, 930
StyD4I	CCNGG	5 cut(s)	213, 574, 664, 853, 867
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	2 cut(s)	524, 894
TaiI	ACGT	1 cut(s)	974
TaqI	TCGA	2 cut(s)	332, 1061
TasI	AATT	6 cut(s)	354, 365, 379, 441, 919, 986
TfiI	GAWTC	7 cut(s)	172, 307, 326, 536, 644, 926, 1115
Tru1I	TTAA	3 cut(s)	231, 437, 723
Tru9I	TTAA	3 cut(s)	231, 437, 723
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	3 cut(s)	515, 802, 1093
TseI	GCWGC	3 cut(s)	151, 824, 994
Tsp45I	GTSAC	3 cut(s)	515, 802, 1093
TspDTI	ATGAA	6 cut(s)	249, 608, 692, 932, 993, 1016
TspRI	CASTG	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	662
VspI	ATTAAT	1 cut(s)	231
XagI	CCTNNNNNAGG	1 cut(s)	669
XapI	RAATTY	3 cut(s)	354, 365, 919
XbaI	TCTAGA	1 cut(s)	929
XmaJI	CCTAGG	1 cut(s)	392
XmiI	GTMKAC	3 cut(s)	340, 506, 945
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	5 cut(s)	344, 393, 789, 878, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.