Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002641

Physical Location & Seq

Genomic Coordinates Reverse (-)

5817879 .. 5822255

Gene Structure 4377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG070400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGTACAAGACCGCCGCCTCACGCCTCAGGGCTCTCAAGGGCCGGACAGGCATTAGGGGAGTGGCTAGATTTTCAACATTGGGTGAAGTTTCAAGTCCGGCTGCTGCTGCCACGAAGCCTTCTTGGTCTCCTTTGGGTGGTTTGTTTGGTTGGCTGACCGGAGGACGGTCCAGGTCTATGCCTCCACTGGATTTCCCACTTGAAGGTGTTAAGTTCCCACCTGCATTGCCGGATTATGTTCAACCGGAGAAGCCCAAGATTACGACCCTGCCCAATGGTGTCAAAATAGCCTCTGTGAAGTCAGAGGTACCTACAGCTTCCATAGGTTTATATGTTAATTGTGGTTCAGTCTATGAGACAGCAGAGTCATCTGGAACATCACACCTGCTGGAGCGTATGGCTTTCAAGAGCACGAGAAACCGCAGTCATTTGCGTATTGTGCGGGAGGTGGAGGCGATTGGTGGCAATGTGCAAGCATCAGCTTCTCGGGAGCAGATGAGTTACACCATTACTTCTCTGAAGACTTATGTTCCTGAAATGGTAGAGCTGCTTCTTGACTCGGTTCGGAATCCTGTTTTCCTTGAGTGGGAAGTGAATGAGGAGCTTCTCCGGGTGAAAGATGATATTAATGAAGCCTCCAAAAACCCTGAAGCCCTTGTTTTGGAAGCAGTTCACTCTGTTGGTTACAAGGGTGGATTGGCGAATCCACTCTTAGCCCAAGAATCTTCGATTGGTAGACTAGATAGTGAAATTTTGGAGGAATTCGTTGCCGAAAATTATACTGCTCCTAGGATGGTGCTGACCGCTTATGGTGTTGAACATGAGGAACTTCTAAAAATTGCAGAACCACTTTTGTCTGATCTCCCCAGTGTCCCTCTTGCTGAGGAGCCAACATCTATGTATACTGGAGGTGACTACCGTTGTCAAGCTGAATCAGGGGATACTCATTTTGCTCTTGCATTTGAACTTCCTGGTGGATGGCTTAGGATGAAGGATGCAATGATTTTGAATGTTCTTCAGATGCTAATGGGAGGAGGTGAATCCTTTTCAACCGGCGGACCTGGAAAAGGGATGAACTCGCGATTATGTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C

Protein Analysis

364

Amino Acids

39.47

Weight (kDa)

5.59

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16	PF00675	96 - 239	4.6e-42	Insulinase (Peptidase family M16)
Peptidase_M16_C	PF05193	248 - 363	2.2e-14	Peptidase M16 inactive domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51980 AT1G51980 AT3G16480
fragaria_vesca	FvH4_1g06540 FvH4_1g06540 FvH4_1g06540 FvH4_6g32600 FvH4_6g32600
malus_domestica	MD02G1068800.v1.1 MD09G1200100.v1.1 MD17G1181200.v1.1
prunus_persica	Prupe.3G056700_v2.0.a1 Prupe.7G216900_v2.0.a1
pyrus_communis	pycom02g05450 pycom09g11770 pycom17g19060
rosa_chinensis	RchiOBHm_Chr2g0092291 RchiOBHm_Chr2g0141051
rosa_laevigata	RLG00000016294 RLG00000019911
rosa_multiflora	Rmu_co8416335.1_g000001 Rmu_sc0003289.1_g000021 Rmu_sc0004769.1_g000017 Rmu_sc0012897.1_g000005
rosa_roxburghii	Rroxscaffold_2G00104250 Rroxscaffold_2G00149290
rosa_rugosa	Rorug02G0024700 Rorug02G0366400
rosa_samantha	Rh2AG070400 Rh2AG417800 Rh2BG069900 Rh2BG427700 Rh2CG071100 Rh2CG356200 Rh2CG404100 Rh2DG068900 Rh2DG437200
rosa_wichuraiana	Rw2G006190 Rw2G034200 Rw2G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	229, 393
AasI	GACNNNNNNGTC	1 cut(s)	364
Acc36I	ACCTGC	2 cut(s)	229, 393
Acc65I	GGTACC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	307
AccI	GTMKAC	2 cut(s)	736, 902
AccII	CGCG	1 cut(s)	1081
AciI	CCGC	6 cut(s)	12, 15, 421, 442, 804, 1056
AcsI	RAATTY	2 cut(s)	750, 761
AcuI	CTGAAG	3 cut(s)	539, 669, 1001
AfaI	GTAC	2 cut(s)	5, 309
AfiI	CCNNNNNNNGG	6 cut(s)	137, 165, 203, 586, 661, 1067
AgsI	TTSAA	9 cut(s)	75, 93, 203, 242, 406, 818, 965, 1009, 1050
AjnI	CCWGG	3 cut(s)	170, 970, 1060
AjuI	GAANNNNNNNTTGG	2 cut(s)	714, 746
AluBI	AGCT	5 cut(s)	317, 482, 547, 604, 929
AluI	AGCT	5 cut(s)	317, 482, 547, 604, 929
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	2 cut(s)	132, 350
Ama87I	CYCGRG	1 cut(s)	486
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	4 cut(s)	101, 104, 107, 547
ApoI	RAATTY	2 cut(s)	750, 761
AseI	ATTAAT	1 cut(s)	627
Asp700I	GAANNNNTTC	1 cut(s)	669
Asp718I	GGTACC	1 cut(s)	307
AspA2I	CCTAGG	1 cut(s)	788
AspS9I	GGNCC	3 cut(s)	40, 168, 1058
AsuC2I	CCSGG	1 cut(s)	611
AsuHPI	GGTGA	4 cut(s)	95, 625, 923, 1049
AvaI	CYCGRG	1 cut(s)	486
AvaII	GGWCC	2 cut(s)	168, 1058
AvrII	CCTAGG	1 cut(s)	788
AxyI	CCTNAGG	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	34
BarI	GAAGNNNNNNTAC	2 cut(s)	534, 566
BauI	CACGAG	1 cut(s)	412
BbsI	GAAGAC	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	413
BbvCI	CCTCAGC	1 cut(s)	882
BbvI	GCAGC	4 cut(s)	88, 91, 94, 534
BccI	CCATC	2 cut(s)	787, 972
BciT130I	CCWGG	3 cut(s)	172, 972, 1062
BciVI	GTATCC	1 cut(s)	934
BcnI	CCSGG	1 cut(s)	611
BcoDI	GTCTC	2 cut(s)	132, 350
BfaI	CTAG	3 cut(s)	66, 740, 789
BfmI	CTRYAG	1 cut(s)	312
BfuAI	ACCTGC	2 cut(s)	229, 393
BfuI	GTATCC	1 cut(s)	934
BglI	GCCNNNNNGGC	1 cut(s)	48
BisI	GCNGC	5 cut(s)	15, 102, 105, 108, 548
BlnI	CCTAGG	1 cut(s)	788
BlsI	GCNGC	5 cut(s)	16, 103, 106, 109, 549
Bme1390I	CCNGG	4 cut(s)	172, 611, 972, 1062
Bme18I	GGWCC	2 cut(s)	168, 1058
BmeT110I	CYCGRG	1 cut(s)	486
BmgT120I	GGNCC	3 cut(s)	40, 168, 1058
BmiI	GGNNCC	2 cut(s)	309, 888
BmrFI	CCNGG	4 cut(s)	172, 611, 972, 1062
BmrI	ACTGGG	1 cut(s)	861
BmsI	GCATC	3 cut(s)	485, 985, 1011
BmuI	ACTGGG	1 cut(s)	861
BpiI	GAAGAC	1 cut(s)	527
BpmI	CTGGAG	2 cut(s)	410, 927
Bpu10I	CCTNAGC	2 cut(s)	882, 983
BpuEI	CTTGAG	2 cut(s)	20, 602
BpuMI	CCSGG	1 cut(s)	611
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	788
BsaWI	WCCGGW	2 cut(s)	158, 244
Bsc4I	CCNNNNNNNGG	6 cut(s)	137, 165, 203, 586, 661, 1067
Bse118I	RCCGGY	1 cut(s)	1052
Bse1I	ACTGG	3 cut(s)	192, 867, 910
Bse21I	CCTNAGG	1 cut(s)	26
Bse3DI	GCAATG	3 cut(s)	224, 472, 1005
BseBI	CCWGG	3 cut(s)	172, 972, 1062
BseDI	CCNNGG	1 cut(s)	788
BseGI	GGATG	5 cut(s)	798, 983, 993, 1000, 1077
BseLI	CCNNNNNNNGG	6 cut(s)	137, 165, 203, 586, 661, 1067
BseMI	GCAATG	3 cut(s)	224, 472, 1005
BseMII	CTCAG	2 cut(s)	40, 873
BseNI	ACTGG	3 cut(s)	192, 867, 910
BseRI	GAGGAG	3 cut(s)	614, 899, 1047
BseXI	GCAGC	4 cut(s)	88, 91, 94, 534
Bsh1236I	CGCG	1 cut(s)	1081
BshFI	GGCC	1 cut(s)	42
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	413
BsiHKCI	CYCGRG	1 cut(s)	486
BsiSI	CCGG	7 cut(s)	43, 98, 159, 230, 245, 610, 1053
BslFI	GGGAC	1 cut(s)	857
BslI	CCNNNNNNNGG	6 cut(s)	137, 165, 203, 586, 661, 1067
BsmAI	GTCTC	2 cut(s)	132, 350
BsmFI	GGGAC	1 cut(s)	857
BsnI	GGCC	1 cut(s)	42
Bso31I	GGTCTC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	486
Bsp1286I	GDGCHC	2 cut(s)	34, 413
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	859
Bsp68I	TCGCGA	1 cut(s)	1081
BspACI	CCGC	6 cut(s)	12, 15, 421, 442, 804, 1056
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	2 cut(s)	39, 874
BspFNI	CGCG	1 cut(s)	1081
BspLI	GGNNCC	2 cut(s)	309, 888
BspMI	ACCTGC	2 cut(s)	229, 393
BspT107I	GGYRCC	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	132
BsrDI	GCAATG	3 cut(s)	224, 472, 1005
BsrFI	RCCGGY	1 cut(s)	1052
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	192, 867, 910
BssAI	RCCGGY	1 cut(s)	1052
BssECI	CCNNGG	1 cut(s)	788
BssMI	GATC	1 cut(s)	859
BssNAI	GTATAC	1 cut(s)	903
BssSI	CACGAG	1 cut(s)	412
BssT1I	CCWWGG	1 cut(s)	788
Bst1107I	GTATAC	1 cut(s)	903
Bst2BI	CACGAG	1 cut(s)	412
Bst2UI	CCWGG	3 cut(s)	172, 972, 1062
Bst4CI	ACNGT	2 cut(s)	168, 920
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	4 cut(s)	26, 712, 882, 983
BstENI	CCTNNNNNAGG	1 cut(s)	1065
BstF5I	GGATG	5 cut(s)	798, 983, 993, 1000, 1077
BstFNI	CGCG	1 cut(s)	1081
BstKTI	GATC	1 cut(s)	862
BstMAI	GTCTC	2 cut(s)	132, 350
BstMBI	GATC	1 cut(s)	859
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 107, 439
BstNI	CCWGG	3 cut(s)	172, 972, 1062
BstSCI	CCNGG	4 cut(s)	170, 609, 970, 1060
BstSFI	CTRYAG	1 cut(s)	312
BstUI	CGCG	1 cut(s)	1081
BstV1I	GCAGC	4 cut(s)	88, 91, 94, 534
BstV2I	GAAGAC	1 cut(s)	527
BstZ17I	GTATAC	1 cut(s)	903
Bsu36I	CCTNAGG	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	934
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	5 cut(s)	798, 983, 993, 1000, 1077
BtsIMutI	CAGTG	2 cut(s)	185, 874
BtuMI	TCGCGA	1 cut(s)	1081
BveI	ACCTGC	2 cut(s)	229, 393
Cac8I	GCNNGC	1 cut(s)	474
Cfr10I	RCCGGY	1 cut(s)	1052
Cfr13I	GGNCC	3 cut(s)	40, 168, 1058
Csp6I	GTAC	2 cut(s)	4, 308
CspCI	CAANNNNNGTGG	2 cut(s)	207, 242
CviAII	CATG	1 cut(s)	821
CviQI	GTAC	2 cut(s)	4, 308
DdeI	CTNAG	4 cut(s)	26, 712, 882, 983
DpnI	GATC	1 cut(s)	861
DpnII	GATC	1 cut(s)	859
DrdI	GACNNNNNNGTC	1 cut(s)	364
DseDI	GACNNNNNNGTC	1 cut(s)	364
EciI	GGCGGA	1 cut(s)	1071
Eco130I	CCWWGG	1 cut(s)	788
Eco24I	GRGCYC	1 cut(s)	34
Eco31I	GGTCTC	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	168, 1058
Eco57I	CTGAAG	3 cut(s)	539, 669, 1001
Eco81I	CCTNAGG	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	486
EcoNI	CCTNNNNNAGG	1 cut(s)	1065
EcoRI	GAATTC	1 cut(s)	761
EcoRII	CCWGG	3 cut(s)	170, 970, 1060
EcoT14I	CCWWGG	1 cut(s)	788
EcoT38I	GRGCYC	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	788
FaeI	CATG	1 cut(s)	824
FaqI	GGGAC	1 cut(s)	857
FatI	CATG	1 cut(s)	820
FauI	CCCGC	1 cut(s)	435
FblI	GTMKAC	2 cut(s)	736, 902
Fnu4HI	GCNGC	5 cut(s)	15, 102, 105, 108, 548
FokI	GGATG	5 cut(s)	805, 990, 1000, 1007, 1084
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	5 cut(s)	15, 102, 105, 108, 548
FspBI	CTAG	3 cut(s)	66, 740, 789
GluI	GCNGC	5 cut(s)	15, 102, 105, 108, 548
GsuI	CTGGAG	2 cut(s)	410, 927
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	7 cut(s)	43, 98, 159, 230, 245, 610, 1053
Hin1II	CATG	1 cut(s)	824
HinfI	GANTC	7 cut(s)	365, 557, 568, 703, 722, 932, 1040
HpaII	CCGG	7 cut(s)	43, 98, 159, 230, 245, 610, 1053
HphI	GGTGA	4 cut(s)	95, 625, 923, 1049
Hpy166II	GTNNAC	3 cut(s)	673, 737, 903
Hpy188I	TCNGA	5 cut(s)	304, 519, 567, 859, 1020
Hpy188III	TCNNGA	6 cut(s)	372, 406, 488, 533, 554, 1080
Hpy8I	GTNNAC	3 cut(s)	673, 737, 903
HpyAV	CCTTC	3 cut(s)	129, 197, 985
HpyCH4III	ACNGT	2 cut(s)	168, 920
HpyCH4V	TGCA	5 cut(s)	224, 472, 842, 959, 998
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 107, 439
HpyF3I	CTNAG	4 cut(s)	26, 712, 882, 983
Hsp92II	CATG	1 cut(s)	824
KpnI	GGTACC	1 cut(s)	311
Kzo9I	GATC	1 cut(s)	859
LmnI	GCTCC	5 cut(s)	391, 490, 601, 790, 886
Lsp1109I	GCAGC	4 cut(s)	88, 91, 94, 534
LweI	GCATC	3 cut(s)	485, 985, 1011
MaeI	CTAG	3 cut(s)	66, 740, 789
MaeIII	GTNAC	3 cut(s)	500, 683, 911
MalI	GATC	1 cut(s)	861
MboI	GATC	1 cut(s)	859
MboII	GAAGA	3 cut(s)	532, 717, 1007
MhlI	GDGCHC	2 cut(s)	34, 413
MluCI	AATT	5 cut(s)	337, 750, 761, 775, 837
MlyI	GAGTC	2 cut(s)	374, 551
MroXI	GAANNNNTTC	1 cut(s)	669
MseI	TTAA	3 cut(s)	210, 336, 627
MspI	CCGG	7 cut(s)	43, 98, 159, 230, 245, 610, 1053
MspR9I	CCNGG	4 cut(s)	172, 611, 972, 1062
MvaI	CCWGG	3 cut(s)	172, 972, 1062
MvnI	CGCG	1 cut(s)	1081
MwoI	GCNNNNNNNGC	3 cut(s)	48, 107, 439
NciI	CCSGG	1 cut(s)	611
NdeII	GATC	1 cut(s)	859
NlaIII	CATG	1 cut(s)	824
NlaIV	GGNNCC	2 cut(s)	309, 888
NmuCI	GTSAC	1 cut(s)	911
NruI	TCGCGA	1 cut(s)	1081
PaqCI	CACCTGC	2 cut(s)	229, 393
PdmI	GAANNNNTTC	1 cut(s)	669
PfeI	GAWTC	5 cut(s)	568, 703, 722, 932, 1040
PkrI	GCNGC	5 cut(s)	16, 103, 106, 109, 549
PleI	GAGTC	2 cut(s)	373, 551
PpsI	GAGTC	2 cut(s)	373, 551
PshBI	ATTAAT	1 cut(s)	627
Psp6I	CCWGG	3 cut(s)	170, 970, 1060
PspGI	CCWGG	3 cut(s)	170, 970, 1060
PspN4I	GGNNCC	2 cut(s)	309, 888
PspPI	GGNCC	3 cut(s)	40, 168, 1058
RruI	TCGCGA	1 cut(s)	1081
RsaI	GTAC	2 cut(s)	5, 309
RsaNI	GTAC	2 cut(s)	4, 308
SaqAI	TTAA	3 cut(s)	210, 336, 627
SatI	GCNGC	5 cut(s)	15, 102, 105, 108, 548
Sau3AI	GATC	1 cut(s)	859
Sau96I	GGNCC	3 cut(s)	40, 168, 1058
SchI	GAGTC	2 cut(s)	374, 551
ScrFI	CCNGG	4 cut(s)	172, 611, 972, 1062
SduI	GDGCHC	2 cut(s)	34, 413
SfaNI	GCATC	3 cut(s)	485, 985, 1011
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	2 cut(s)	168, 1058
SmlI	CTYRAG	2 cut(s)	35, 581
SmoI	CTYRAG	2 cut(s)	35, 581
Sse9I	AATT	5 cut(s)	337, 750, 761, 775, 837
SsiI	CCGC	6 cut(s)	12, 15, 421, 442, 804, 1056
SspMI	CTAG	3 cut(s)	66, 740, 789
StyD4I	CCNGG	4 cut(s)	170, 609, 970, 1060
StyI	CCWWGG	1 cut(s)	788
TaaI	ACNGT	2 cut(s)	168, 920
TaqI	TCGA	1 cut(s)	728
TasI	AATT	5 cut(s)	337, 750, 761, 775, 837
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	5 cut(s)	568, 703, 722, 932, 1040
Tru1I	TTAA	3 cut(s)	210, 336, 627
Tru9I	TTAA	3 cut(s)	210, 336, 627
TscAI	CASTG	2 cut(s)	192, 874
TseFI	GTSAC	1 cut(s)	911
TseI	GCWGC	4 cut(s)	101, 104, 107, 547
Tsp45I	GTSAC	1 cut(s)	911
TspDTI	ATGAA	3 cut(s)	645, 1004, 1088
TspRI	CASTG	2 cut(s)	192, 874
VpaK11BI	GGWCC	2 cut(s)	168, 1058
VspI	ATTAAT	1 cut(s)	627
XagI	CCTNNNNNAGG	1 cut(s)	1065
XapI	RAATTY	2 cut(s)	750, 761
XmaJI	CCTAGG	1 cut(s)	788
XmiI	GTMKAC	2 cut(s)	736, 902
XmnI	GAANNNNTTC	1 cut(s)	669
XspI	CTAG	3 cut(s)	66, 740, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.