Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001993

Physical Location & Seq

Genomic Coordinates Reverse (-)

17673424 .. 17678267

Gene Structure 4844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGTTAGCTTCTTCCAGGTCCCTCTTCAGAGTGGATCGGTTTCTGAAATTTACAACTGCATATGATGCACTGAAGCCAGTGAATTGCTTCCTAGGACACTGTGATTATCGCAGTTTGAGTTACAATATCGAAATGAGTGGTAGAAAAGACAAGCAAACTGTTGGGGACCGTAACAAAAAGCTCAGAACAACTAATGCTGTGTGGAGACCAGTCAGTACTCAAGCTAGTTCCAATGAAGAATGCTCTCTGAAGGAGGTCACAGAAAAGCTGGAATCTGAAACTCAAGTGCAAGAAGTGCACGAATGCACTTCTACGAGAATTTCAAGTTTGGAGAATGTCATAGAGGTGGCTGCAACTAACCTCGCTGGTGGTTCCAGTGCATCACAAGATAATGGAGAAGATAAAGTCTTTGGAGGAGAGCAAGTGGTTTCTACTGAAAAGCATTCAATTTCAGTTGAGGTTGGTGCTTCTTTGTTTCGCTTTATTAGAGGAAAAGGGGGATTGACACAGAAACAGATTGAGGATGAGATGGGAGTTAAGATTAGAATCCCTTTGTCAAAGGAGGAGGATTCACTAACTATTGAAGGCAACTCAGTTGAAAGTATATCTAGAGCTTTTGAGAAGATAAAATCTATAGTTGACCAGGCAGTTAAAAGCTCAAATCTCGATTACTCTCACTTCATTTCACTTCCATTGGCAATACATCCTGAATTAGTTGATAAGCTTGTCAACTTTCAGAACTCAATCCTGGGAATTAGTGATTCTGGTGTAGATGATAATCTGGATAGTAATTCAAATGAAGAGAATTCTGAGAGTGAAGGTGAATACCAAAATTTAGAGAAAAGACCCGATGTTGCAGTTGAACTTAAAGTTGAAGGTGACCATCAACATGTTAAAGTGAATCTAACCAACATACCTCTTGTCAGTTATGCGCTTAAATCATCAAAGGCGGCTACCCTATCTGACTTGGGGATTGAAAAGTCAATATTCATTAAACCAAAAACTTTTCACTTAACTGTGCTTATGCTGAAGTTGTGGAACAAGGACCGAGTTCATGCTGCTACTGAGGTTTTGCAGAGAATCTCTTCAAAAGTGATCGAAGCCTTAGATAATCGCCCTGTCTCCATAAGACTGAAGGGACTGAATTGTATGAGAGGTTCTTTGGCCAAAGCTGGTGTTGTCTATGCTCCAGTTGAAGAAATTGGCACTGAGGGACGACTTCTGCGTGCCTGTCAAGTCATCATCGATGCATATATTGAAGCCGGGCTTGTTTTAGAGAAAGATGCTAATCAGAAATTGAAGTTGCATGCAACCGTGATGAATGCAAGGCACAGGAAAAGGAAGAAAGGAACGAGAAAGGTTAATTCCTTTGATGCGCGTGGCATTTTCAAGCAATATGGATCGGAGGAATGGGGAGAGTATCTTATCCGCGAAGCTCATCTTTCACAGAGGTTTGTGTTTGATGACAAAGGATATTACCGTTGTTGTGCTTCTATACCTTTTCCTGAAATATGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AKAP7_NLS Auxin_canalis KH_1 PH_2

Protein Analysis

507

Amino Acids

56.48

Weight (kDa)

7.18

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	150 - 210	2.2e-09	KH domain
AKAP7_NLS	PF10469	318 - 501	3.1e-47	AKAP7 2'5' RNA ligase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230
fragaria_vesca	FvH4_6g31950 FvH4_6g31960 FvH4_6g31960 FvH4_6g31960
malus_domestica	MD09G1207800.v1.1 MD17G1188900.v1.1
prunus_persica	Prupe.3G063900_v2.0.a1 Prupe.3G063900_v2.0.a1
pyrus_communis	pycom09g12390 pycom17g19720
rosa_chinensis	RchiOBHm_Chr2g0139371 RchiOBHm_Chr2g0139461
rosa_laevigata	RLG00000019809 RLG00000019812
rosa_multiflora	Rmu_co8444677.1_g000001 Rmu_co8444769.1_g000001 Rmu_sc0001983.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105420 Rroxscaffold_2G00105430
rosa_rugosa	Rorug02G0358100
rosa_samantha	Rh2AG407200 Rh2AG407400 Rh2BG417500 Rh2BG418000 Rh2CG393200 Rh2CG393400 Rh2DG426600 Rh2DG426800
rosa_wichuraiana	Rw2G032990 Rw2G033000 Rw2G033250 Rw2G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	1378, 1431
AciI	CCGC	2 cut(s)	950, 1429
AclWI	GGATC	2 cut(s)	42, 1408
AcoI	YGGCCR	1 cut(s)	1164
AcsI	RAATTY	4 cut(s)	47, 318, 805, 832
AcuI	CTGAAG	5 cut(s)	10, 92, 269, 1049, 1154
AfaI	GTAC	1 cut(s)	217
AflIII	ACRYGT	1 cut(s)	889
AjnI	CCWGG	3 cut(s)	14, 642, 747
AluBI	AGCT	9 cut(s)	8, 181, 224, 268, 614, 657, 724, 1172, 1436
AluI	AGCT	9 cut(s)	8, 181, 224, 268, 614, 657, 724, 1172, 1436
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	199, 1126
Alw44I	GTGCAC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	42, 1408
AoxI	GGCC	1 cut(s)	1164
ApaLI	GTGCAC	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	350, 1058
ApoI	RAATTY	4 cut(s)	47, 318, 805, 832
Asp700I	GAANNNNTTC	2 cut(s)	86, 1084
AspA2I	CCTAGG	1 cut(s)	91
AspLEI	GCGC	2 cut(s)	934, 1378
AspS9I	GGNCC	3 cut(s)	18, 166, 1045
AsuC2I	CCSGG	1 cut(s)	1264
AsuHPI	GGTGA	2 cut(s)	833, 890
AvaII	GGWCC	3 cut(s)	18, 166, 1045
AvrII	CCTAGG	1 cut(s)	91
BaeGI	GKGCMC	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	1166
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	337, 1045
BccI	CCATC	2 cut(s)	523, 891
BciT130I	CCWGG	3 cut(s)	16, 644, 749
BcnI	CCSGG	1 cut(s)	1264
BcoDI	GTCTC	2 cut(s)	199, 1126
BfaI	CTAG	3 cut(s)	92, 225, 609
BfmI	CTRYAG	1 cut(s)	633
BisI	GCNGC	3 cut(s)	351, 951, 1059
BlnI	CCTAGG	1 cut(s)	91
BlsI	GCNGC	3 cut(s)	352, 952, 1060
BmcAI	AGTACT	1 cut(s)	217
Bme1390I	CCNGG	4 cut(s)	16, 644, 749, 1264
Bme18I	GGWCC	3 cut(s)	18, 166, 1045
BmgT120I	GGNCC	3 cut(s)	18, 166, 1045
BmiI	GGNNCC	3 cut(s)	20, 167, 373
BmrFI	CCNGG	4 cut(s)	16, 644, 749, 1264
BmsI	GCATC	5 cut(s)	55, 389, 1237, 1273, 1363
BpmI	CTGGAG	1 cut(s)	1173
BpuEI	CTTGAG	2 cut(s)	204, 267
BpuMI	CCSGG	1 cut(s)	1264
Bsa29I	ATCGAT	1 cut(s)	1245
BsaBI	GATNNNNATC	3 cut(s)	545, 777, 1287
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	91, 748
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bse1I	ACTGG	4 cut(s)	77, 209, 375, 1190
Bse8I	GATNNNNATC	3 cut(s)	545, 777, 1287
BseBI	CCWGG	3 cut(s)	16, 644, 749
BseCI	ATCGAT	1 cut(s)	1245
BseDI	CCNNGG	2 cut(s)	91, 748
BseGI	GGATG	2 cut(s)	529, 703
BseJI	GATNNNNATC	3 cut(s)	545, 777, 1287
BseMII	CTCAG	5 cut(s)	196, 606, 801, 1056, 1200
BseNI	ACTGG	4 cut(s)	77, 209, 375, 1190
BseRI	GAGGAG	2 cut(s)	429, 578
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	2 cut(s)	337, 1045
Bsh1236I	CGCG	2 cut(s)	1378, 1431
BshFI	GGCC	1 cut(s)	1166
BshVI	ATCGAT	1 cut(s)	1245
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	1263
BslFI	GGGAC	4 cut(s)	4, 179, 1152, 1227
BsmAI	GTCTC	2 cut(s)	199, 1126
BsmFI	GGGAC	4 cut(s)	4, 179, 1152, 1227
BsmI	GAATGC	4 cut(s)	245, 308, 442, 1327
BsnI	GGCC	1 cut(s)	1166
Bso31I	GGTCTC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	3 cut(s)	34, 1095, 1400
BspACI	CCGC	2 cut(s)	950, 1429
BspANI	GGCC	1 cut(s)	1166
BspCNI	CTCAG	5 cut(s)	195, 605, 802, 1057, 1201
BspDI	ATCGAT	1 cut(s)	1245
BspFNI	CGCG	2 cut(s)	1378, 1431
BspLI	GGNNCC	3 cut(s)	20, 167, 373
BspPI	GGATC	2 cut(s)	42, 1408
BspTNI	GGTCTC	1 cut(s)	199
BsrI	ACTGG	4 cut(s)	77, 209, 375, 1190
BssECI	CCNNGG	2 cut(s)	91, 748
BssMI	GATC	3 cut(s)	34, 1095, 1400
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	3 cut(s)	16, 644, 749
Bst4CI	ACNGT	6 cut(s)	101, 160, 170, 1018, 1315, 1481
Bst6I	CTCTTC	3 cut(s)	29, 795, 1090
BstAPI	GCANNNNNTGC	2 cut(s)	65, 295
BstC8I	GCNNGC	2 cut(s)	1227, 1308
BstDEI	CTNAG	6 cut(s)	182, 592, 810, 1065, 1105, 1209
BstEII	GGTNACC	1 cut(s)	878
BstF5I	GGATG	2 cut(s)	529, 703
BstFNI	CGCG	2 cut(s)	1378, 1431
BstHHI	GCGC	2 cut(s)	934, 1378
BstKTI	GATC	3 cut(s)	37, 1098, 1403
BstMAI	GTCTC	2 cut(s)	199, 1126
BstMBI	GATC	3 cut(s)	34, 1095, 1400
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 295
BstNI	CCWGG	3 cut(s)	16, 644, 749
BstNSI	RCATGY	2 cut(s)	893, 1310
BstPI	GGTNACC	1 cut(s)	878
BstSCI	CCNGG	4 cut(s)	14, 642, 747, 1262
BstSFI	CTRYAG	1 cut(s)	633
BstSLI	GKGCMC	1 cut(s)	300
BstUI	CGCG	2 cut(s)	1378, 1431
BstV1I	GCAGC	2 cut(s)	337, 1045
Bsu15I	ATCGAT	1 cut(s)	1245
BsuRI	GGCC	1 cut(s)	1166
BsuTUI	ATCGAT	1 cut(s)	1245
BtsCI	GGATG	2 cut(s)	529, 703
BtsIMutI	CAGTG	5 cut(s)	68, 84, 97, 382, 1206
Cac8I	GCNNGC	2 cut(s)	1227, 1308
CfoI	GCGC	2 cut(s)	934, 1378
Cfr13I	GGNCC	3 cut(s)	18, 166, 1045
ClaI	ATCGAT	1 cut(s)	1245
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	3 cut(s)	890, 1055, 1307
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	6 cut(s)	182, 592, 810, 1065, 1105, 1209
DpnI	GATC	3 cut(s)	36, 1097, 1402
DpnII	GATC	3 cut(s)	34, 1095, 1400
EaeI	YGGCCR	1 cut(s)	1164
Eam1104I	CTCTTC	3 cut(s)	29, 795, 1090
EarI	CTCTTC	3 cut(s)	29, 795, 1090
Eco130I	CCWWGG	1 cut(s)	91
Eco31I	GGTCTC	1 cut(s)	199
Eco47I	GGWCC	3 cut(s)	18, 166, 1045
Eco57I	CTGAAG	5 cut(s)	10, 92, 269, 1049, 1154
Eco91I	GGTNACC	1 cut(s)	878
EcoO109I	RGGNCCY	1 cut(s)	18
EcoO65I	GGTNACC	1 cut(s)	878
EcoRI	GAATTC	1 cut(s)	805
EcoRII	CCWGG	3 cut(s)	14, 642, 747
EcoT14I	CCWWGG	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	1252
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	3 cut(s)	893, 1058, 1310
FalI	AAGNNNNNCTT	4 cut(s)	1251, 1283, 1425, 1457
FaqI	GGGAC	4 cut(s)	4, 179, 1152, 1227
FatI	CATG	3 cut(s)	889, 1054, 1306
FauNDI	CATATG	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	351, 951, 1059
FokI	GGATG	2 cut(s)	536, 690
Fsp4HI	GCNGC	3 cut(s)	351, 951, 1059
FspBI	CTAG	3 cut(s)	92, 225, 609
GlaI	GCGC	2 cut(s)	933, 1377
GluI	GCNGC	3 cut(s)	351, 951, 1059
GsuI	CTGGAG	1 cut(s)	1173
HaeIII	GGCC	1 cut(s)	1166
HapII	CCGG	1 cut(s)	1263
HhaI	GCGC	2 cut(s)	934, 1378
Hin1II	CATG	3 cut(s)	893, 1058, 1310
Hin6I	GCGC	2 cut(s)	932, 1376
HinP1I	GCGC	2 cut(s)	932, 1376
HincII	GTYRAC	2 cut(s)	640, 730
HindII	GTYRAC	2 cut(s)	640, 730
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	6 cut(s)	272, 546, 569, 761, 901, 1080
HpaII	CCGG	1 cut(s)	1263
HphI	GGTGA	2 cut(s)	833, 890
Hpy166II	GTNNAC	3 cut(s)	298, 640, 730
Hpy188III	TCNNGA	5 cut(s)	609, 665, 707, 782, 1505
Hpy8I	GTNNAC	3 cut(s)	298, 640, 730
HpyAV	CCTTC	5 cut(s)	244, 578, 812, 869, 1129
HpyCH4III	ACNGT	6 cut(s)	101, 160, 170, 1018, 1315, 1481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 295
HpyF3I	CTNAG	6 cut(s)	182, 592, 810, 1065, 1105, 1209
Hsp92II	CATG	3 cut(s)	893, 1058, 1310
HspAI	GCGC	2 cut(s)	932, 1376
Kzo9I	GATC	3 cut(s)	34, 1095, 1400
LmnI	GCTCC	1 cut(s)	1192
Lsp1109I	GCAGC	2 cut(s)	337, 1045
LweI	GCATC	5 cut(s)	55, 389, 1237, 1273, 1363
MaeI	CTAG	3 cut(s)	92, 225, 609
MaeIII	GTNAC	4 cut(s)	119, 170, 256, 878
MalI	GATC	3 cut(s)	36, 1097, 1402
MboI	GATC	3 cut(s)	34, 1095, 1400
MboII	GAAGA	9 cut(s)	3, 16, 248, 410, 634, 812, 1077, 1208, 1354
MhlI	GDGCHC	1 cut(s)	300
MlsI	TGGCCA	1 cut(s)	1166
MluNI	TGGCCA	1 cut(s)	1166
Mox20I	TGGCCA	1 cut(s)	1166
Mph1103I	ATGCAT	1 cut(s)	1252
MroXI	GAANNNNTTC	2 cut(s)	86, 1084
MscI	TGGCCA	1 cut(s)	1166
MseI	TTAA	8 cut(s)	537, 651, 867, 894, 936, 993, 1013, 1362
MslI	CAYNNNNRTG	2 cut(s)	344, 888
Msp20I	TGGCCA	1 cut(s)	1166
MspI	CCGG	1 cut(s)	1263
MspR9I	CCNGG	4 cut(s)	16, 644, 749, 1264
Mva1269I	GAATGC	4 cut(s)	245, 308, 442, 1327
MvaI	CCWGG	3 cut(s)	16, 644, 749
MvnI	CGCG	2 cut(s)	1378, 1431
MwoI	GCNNNNNNNGC	2 cut(s)	65, 295
NciI	CCSGG	1 cut(s)	1264
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	3 cut(s)	34, 1095, 1400
NlaIII	CATG	3 cut(s)	893, 1058, 1310
NlaIV	GGNNCC	3 cut(s)	20, 167, 373
NmuCI	GTSAC	2 cut(s)	256, 878
NsiI	ATGCAT	1 cut(s)	1252
NspI	RCATGY	2 cut(s)	893, 1310
PaeI	GCATGC	1 cut(s)	1310
PciI	ACATGT	1 cut(s)	889
PcsI	WCGNNNNNNNCGW	1 cut(s)	1222
PctI	GAATGC	4 cut(s)	245, 308, 442, 1327
PdmI	GAANNNNTTC	2 cut(s)	86, 1084
PfeI	GAWTC	6 cut(s)	272, 546, 569, 761, 901, 1080
PkrI	GCNGC	3 cut(s)	352, 952, 1060
PpuMI	RGGWCCY	1 cut(s)	18
PscI	ACATGT	1 cut(s)	889
Psp5II	RGGWCCY	1 cut(s)	18
Psp6I	CCWGG	3 cut(s)	14, 642, 747
PspEI	GGTNACC	1 cut(s)	878
PspGI	CCWGG	3 cut(s)	14, 642, 747
PspN4I	GGNNCC	3 cut(s)	20, 167, 373
PspPI	GGNCC	3 cut(s)	18, 166, 1045
PspPPI	RGGWCCY	1 cut(s)	18
PsrI	GAACNNNNNNTAC	2 cut(s)	1141, 1173
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	2 cut(s)	344, 888
SaqAI	TTAA	8 cut(s)	537, 651, 867, 894, 936, 993, 1013, 1362
SatI	GCNGC	3 cut(s)	351, 951, 1059
Sau3AI	GATC	3 cut(s)	34, 1095, 1400
Sau96I	GGNCC	3 cut(s)	18, 166, 1045
ScaI	AGTACT	1 cut(s)	217
ScrFI	CCNGG	4 cut(s)	16, 644, 749, 1264
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	5 cut(s)	55, 389, 1237, 1273, 1363
SfcI	CTRYAG	1 cut(s)	633
SinI	GGWCC	3 cut(s)	18, 166, 1045
SmiMI	CAYNNNNRTG	2 cut(s)	344, 888
SmlI	CTYRAG	2 cut(s)	219, 282
SmoI	CTYRAG	2 cut(s)	219, 282
SphI	GCATGC	1 cut(s)	1310
SsiI	CCGC	2 cut(s)	950, 1429
SspI	AATATT	1 cut(s)	987
SspMI	CTAG	3 cut(s)	92, 225, 609
StyD4I	CCNGG	4 cut(s)	14, 642, 747, 1262
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	6 cut(s)	101, 160, 170, 1018, 1315, 1481
TaqI	TCGA	4 cut(s)	129, 666, 1098, 1245
TaqII	GACCGA	1 cut(s)	1062
TatI	WGTACW	1 cut(s)	215
TauI	GCSGC	1 cut(s)	953
TfiI	GAWTC	6 cut(s)	272, 546, 569, 761, 901, 1080
Tru1I	TTAA	8 cut(s)	537, 651, 867, 894, 936, 993, 1013, 1362
Tru9I	TTAA	8 cut(s)	537, 651, 867, 894, 936, 993, 1013, 1362
TscAI	CASTG	5 cut(s)	75, 84, 104, 382, 1213
TseFI	GTSAC	2 cut(s)	256, 878
TseI	GCWGC	2 cut(s)	350, 1058
Tsp45I	GTSAC	2 cut(s)	256, 878
TspDTI	ATGAA	6 cut(s)	249, 670, 813, 979, 1043, 1334
TspRI	CASTG	5 cut(s)	75, 84, 104, 382, 1213
VneI	GTGCAC	1 cut(s)	296
VpaK11BI	GGWCC	3 cut(s)	18, 166, 1045
XapI	RAATTY	4 cut(s)	47, 318, 805, 832
XbaI	TCTAGA	1 cut(s)	608
XceI	RCATGY	2 cut(s)	893, 1310
XmaJI	CCTAGG	1 cut(s)	91
XmnI	GAANNNNTTC	2 cut(s)	86, 1084
XspI	CTAG	3 cut(s)	92, 225, 609
ZrmI	AGTACT	1 cut(s)	217
Zsp2I	ATGCAT	1 cut(s)	1252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.