Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003650

Physical Location & Seq

Genomic Coordinates Forward (+)

18279165 .. 18279575

Gene Structure 411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTGCACGGAGCTTGAAGCTGAGATCTCTAGAGTTCAGGCCGAGTTTGCTAGGGTCAGGGAATCGGTGCAGAGGAGCCTTGATGAGGCTACCTTAAGTGGTGATGCGGTTGCTGGTGAGCTTGCTGCAGCAAAAGAACTTTTGAAGAAGACAAATGAGGAGCTGCAAGTTCTGTCCCATGAATTAGCAACTGTTGCGACAAAACGTGATAGCCTGCAGGAGGAATTGGTGGACGTCTATAAAAATGCCGAAAGAGCTTCTAATAATCTAAAAGAAGAAAAAGAGCTAGTTTCTTCTTTAAAAAAAGAAGTTCAAGCTCTGGAGAAGCAGATTTTGAAAGATAAGCAGTCTCGTAAGTCTCTTGCAACAGACCTGGAAGAGGCTACCAAAGCACTGGATGAGATGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009295 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016363 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0034357 GO:0034399 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.13

Weight (kDa)

4.87

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16000
fragaria_vesca	FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081 FvH4_6g31081
malus_domestica	MD09G1212900.v1.1 MD09G1213300.v1.1 MD09G1213400.v1.1 MD09G1213500.v1.1 MD09G1213800.v1.1 MD17G1195700.v1.1
prunus_persica	Prupe.3G071700_v2.0.a1
pyrus_communis	pycom09g13050 pycom17g20130 pycom17g20140
rosa_chinensis	RchiOBHm_Chr2g0137781
rosa_laevigata	RLG00000019675
rosa_multiflora	Rmu_sc0008635.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106850
rosa_rugosa	Rorug02G0345400 Rorug02G0345500 Rorug02G0345600 Rorug02G0345600 Rorug02G0345700 Rorug02G0345700
rosa_samantha	Rh2AG392700 Rh2BG400400 Rh2CG379400 Rh2DG415300
rosa_wichuraiana	Rw2G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
AciI	CCGC	1 cut(s)	107
AcyI	GRCGYC	1 cut(s)	234
AfiI	CCNNNNNNNGG	3 cut(s)	85, 220, 379
AflII	CTTAAG	1 cut(s)	94
AgsI	TTSAA	4 cut(s)	17, 145, 314, 337
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	7 cut(s)	13, 20, 121, 163, 257, 286, 317
AluI	AGCT	7 cut(s)	13, 20, 121, 163, 257, 286, 317
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	354, 363
Alw44I	GTGCAC	1 cut(s)	4
AoxI	GGCC	1 cut(s)	39
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	3 cut(s)	125, 128, 163
AsuHPI	GGTGA	2 cut(s)	113, 128
BaeGI	GKGCMC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	3 cut(s)	112, 140, 150
BccI	CCATC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	354, 363
BfaI	CTAG	3 cut(s)	30, 51, 287
BfmI	CTRYAG	2 cut(s)	126, 215
BfrI	CTTAAG	1 cut(s)	94
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	3 cut(s)	126, 129, 164
BlsI	GCNGC	3 cut(s)	127, 130, 165
Bme1390I	CCNGG	1 cut(s)	374
BmiI	GGNNCC	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 220, 379
Bse1I	ACTGG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	374
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	3 cut(s)	85, 220, 379
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	2 cut(s)	88, 173
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	3 cut(s)	112, 140, 150
BsgI	GTGCAG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	3 cut(s)	85, 220, 379
BsmAI	GTCTC	2 cut(s)	354, 363
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	77
BspMAI	CTGCAG	2 cut(s)	130, 219
BspTI	CTTAAG	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	399
BssMI	GATC	1 cut(s)	24
BssNI	GRCGYC	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	372
BstACI	GRCGYC	1 cut(s)	234
BstAFI	CTTAAG	1 cut(s)	94
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	123, 215
BstDEI	CTNAG	1 cut(s)	21
BstENI	CCTNNNNNAGG	3 cut(s)	83, 218, 377
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	2 cut(s)	354, 363
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 194, 254, 389
BstNI	CCWGG	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	2 cut(s)	126, 215
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	3 cut(s)	112, 140, 150
BstV2I	GAAGAC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	24
BstXI	CCANNNNNNTGG	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	2 cut(s)	123, 215
CviAII	CATG	1 cut(s)	179
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
DraI	TTTAAA	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
EcoNI	CCTNNNNNAGG	3 cut(s)	83, 218, 377
EcoRII	CCWGG	1 cut(s)	372
FaeI	CATG	1 cut(s)	182
FaiI	YATR	2 cut(s)	180, 240
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	1 cut(s)	178
Fnu4HI	GCNGC	3 cut(s)	126, 129, 164
Fsp4HI	GCNGC	3 cut(s)	126, 129, 164
FspBI	CTAG	3 cut(s)	30, 51, 287
GluI	GCNGC	3 cut(s)	126, 129, 164
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	182
HinfI	GANTC	1 cut(s)	62
HphI	GGTGA	2 cut(s)	113, 128
Hpy166II	GTNNAC	2 cut(s)	6, 232
Hpy188III	TCNNGA	2 cut(s)	30, 320
Hpy8I	GTNNAC	2 cut(s)	6, 232
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	2 cut(s)	205, 234
HpyCH4V	TGCA	6 cut(s)	6, 70, 128, 166, 217, 365
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 194, 254, 389
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	2 cut(s)	205, 234
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	3 cut(s)	10, 75, 160
LpnPI	CCDG	9 cut(s)	23, 43, 99, 203, 227, 305, 359, 380, 386
Lsp1109I	GCAGC	3 cut(s)	112, 140, 150
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	3 cut(s)	30, 51, 287
MaeII	ACGT	2 cut(s)	205, 234
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	5 cut(s)	157, 160, 285, 287, 389
MflI	RGATCY	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	182, 224
MnlI	CCTC	5 cut(s)	66, 79, 151, 214, 373
MseI	TTAA	2 cut(s)	95, 299
MspCI	CTTAAG	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	4 cut(s)	47, 194, 254, 389
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	77
NmeAIII	GCCGAG	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	3 cut(s)	127, 130, 165
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	77
PstI	CTGCAG	2 cut(s)	130, 219
PsuI	RGATCY	1 cut(s)	24
SaqAI	TTAA	2 cut(s)	95, 299
SatI	GCNGC	3 cut(s)	126, 129, 164
Sau3AI	GATC	1 cut(s)	24
SbfI	CCTGCAGG	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	374
SdaI	CCTGCAGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	2 cut(s)	126, 215
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse8387I	CCTGCAGG	1 cut(s)	219
Sse9I	AATT	2 cut(s)	182, 224
SsiI	CCGC	1 cut(s)	107
SspMI	CTAG	3 cut(s)	30, 51, 287
StyD4I	CCNGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	2 cut(s)	208, 237
TasI	AATT	2 cut(s)	182, 224
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	2 cut(s)	95, 299
Tru9I	TTAA	2 cut(s)	95, 299
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	3 cut(s)	125, 128, 163
TspDTI	ATGAA	1 cut(s)	195
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	399
Vha464I	CTTAAG	1 cut(s)	94
VneI	GTGCAC	1 cut(s)	4
XagI	CCTNNNNNAGG	3 cut(s)	83, 218, 377
XbaI	TCTAGA	1 cut(s)	29
XspI	CTAG	3 cut(s)	30, 51, 287
ZraI	GACGTC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.