Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006882

Physical Location & Seq

Genomic Coordinates Forward (+)

25214810 .. 25216625

Gene Structure 1816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAGCTTCAGGGAAATGGCGGAGCTTCAGGTGATGGACGTGAAGCATCGAATTCCGGCAGAGGCAACAAGAATTATTATCGTCATACTACGGAGCAGATACGTAGACTCGAAGAATTTTTCAAGTGCTGCTCTCACCCGGATGACAACCAACGTCAACAGCTGAGCCGGGAGCTAGGGCTAGAGCCAAGACAAATCAAGTTCTGGTTCCAAAACAAAAGAACGCAGACCCAGGCTCAAAATGAGAGCGCAGACAACACTGTTCTTCGTAAAGACAATGAAAGGATTCAATGGGAAAACTATGCAATCATAAAGGCCTTAAAGAGTGTCCTTTGCCCAACTTGCGGTGGTCCACCGTTTGGAGAAGAAGCTCGGCAGCTAAGTCTGCAGAGACTTCAGCTGGAAAATGCCTATTTGAAAGAAGAGCATGATAAGGTAGCCAGCCTTCTTTCCAAATACATAGGGAAACCACCATCACAAATTGAATCGCTGGCGTCTGTAGTTGGATCAACGCTGGATTTATCACTAGGCTATTCCACCAACCAAGGGATTATCGGAAGTCCACCCCTTAATCTCAATCTTACCAGTCCTGCATTAGCTTACCAAATAAAAGAAATCCCTGAAAGGGAAAAGACACTCATGGCGGACATTGCTGCCAGTGCCATGGAAGAACTGGTCTCACTTTTTCAGATTGGCGAGCCTTTGTGGGTCAAATCCACAGCTGATGGGCGATATTTTCTCAACGGTGACAACTATGATAAGTTATTTCCTAAAGCCAATCAATTCAAAACCTCTGGTGCATGTGTCGAGTCTTCGAAAGATTCAGGAGTAGTGGCCATTAATGCAGCAACCTTGGTTGACATGTTCTTAGACTCTAATAAATGGGAAGAACTCTTTCCCACAATCCTTACGAAAGCAAAGACAATTGAAGTACTTGAAAGTGGAATGATGAAAAACCGGAATGGTTGCCTACTGCTGGTACATATGAAAGCCAATGCGTTGTTGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

337

Amino Acids

37.44

Weight (kDa)

6.18

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	24 - 76	1.8e-17	Homeodomain
START	PF01852	217 - 332	6.6e-06	START domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03260 AT3G03260
fragaria_vesca	FvH4_1g27700
malus_domestica	MD09G1277500.v1.1 MD09G1277600.v1.1 MD09G1277900.v1.1 MD17G1271000.v1.1 MD17G1271100.v1.1
prunus_persica	Prupe.3G015300_v2.0.a1
pyrus_communis	pycom09g18690 pycom09g18700 pycom09g18710 pycom17g26940
rosa_chinensis	RchiOBHm_Chr3g0488861
rosa_laevigata	RLG00000022916
rosa_multiflora	Rmu_sc0001208.1_g000028
rosa_roxburghii	Rroxscaffold_6G00393800 Rroxscaffold_6G00393810
rosa_rugosa	Rorug03G0242100 Rorug03G0242200
rosa_samantha	Rh3AG290200 Rh3BG327300 Rh3BG327400 Rh3CG324700 Rh3DG323300
rosa_wichuraiana	Rw3G025720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccI	GTMKAC	1 cut(s)	106
AciI	CCGC	3 cut(s)	21, 345, 644
AclWI	GGATC	1 cut(s)	514
AcoI	YGGCCR	1 cut(s)	834
AcsI	RAATTY	2 cut(s)	52, 116
AcuI	CTGAAG	2 cut(s)	12, 380
AcyI	GRCGYC	1 cut(s)	494
AfaI	GTAC	2 cut(s)	933, 981
AfiI	CCNNNNNNNGG	5 cut(s)	344, 359, 546, 625, 976
AflIII	ACRYGT	1 cut(s)	861
AgsI	TTSAA	7 cut(s)	124, 290, 418, 485, 787, 929, 938
AjiI	CACGTC	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	9 cut(s)	7, 26, 163, 175, 371, 379, 400, 599, 722
AluI	AGCT	9 cut(s)	7, 26, 163, 175, 371, 379, 400, 599, 722
Alw26I	GTCTC	2 cut(s)	385, 682
AlwI	GGATC	1 cut(s)	514
AoxI	GGCC	2 cut(s)	315, 834
ApeKI	GCWGC	4 cut(s)	129, 376, 653, 845
ApoI	RAATTY	2 cut(s)	52, 116
AseI	ATTAAT	1 cut(s)	840
Asp700I	GAANNNNTTC	2 cut(s)	285, 894
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	2 cut(s)	140, 170
AsuHPI	GGTGA	3 cut(s)	44, 128, 758
AsuII	TTCGAA	1 cut(s)	815
AvaII	GGWCC	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	836
BarI	GAAGNNNNNNTAC	2 cut(s)	429, 461
BbsI	GAAGAC	1 cut(s)	804
BbvI	GCAGC	4 cut(s)	116, 388, 640, 857
BccI	CCATC	3 cut(s)	29, 481, 719
BciT130I	CCWGG	1 cut(s)	233
BcnI	CCSGG	2 cut(s)	140, 170
BcoDI	GTCTC	2 cut(s)	385, 682
BfaI	CTAG	3 cut(s)	176, 182, 527
BfmI	CTRYAG	2 cut(s)	386, 498
BisI	GCNGC	4 cut(s)	130, 377, 654, 846
BlpI	GCTNAGC	1 cut(s)	164
BlsI	GCNGC	4 cut(s)	131, 378, 655, 847
BmcAI	AGTACT	1 cut(s)	933
Bme1390I	CCNGG	3 cut(s)	140, 170, 233
Bme18I	GGWCC	1 cut(s)	350
BmgBI	CACGTC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	3 cut(s)	140, 170, 233
BmsI	GCATC	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	804
Bpu1102I	GCTNAGC	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	815
BpuMI	CCSGG	2 cut(s)	140, 170
BsaAI	YACGTR	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	494
BsaI	GGTCTC	1 cut(s)	682
BsaJI	CCNNGG	4 cut(s)	231, 544, 663, 852
BsaWI	WCCGGW	1 cut(s)	957
Bsc4I	CCNNNNNNNGG	5 cut(s)	344, 359, 546, 625, 976
Bse1I	ACTGG	3 cut(s)	585, 657, 678
Bse3DI	GCAATG	1 cut(s)	648
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	4 cut(s)	231, 544, 663, 852
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	5 cut(s)	344, 359, 546, 625, 976
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	3 cut(s)	585, 657, 678
BseXI	GCAGC	4 cut(s)	116, 388, 640, 857
BshFI	GGCC	2 cut(s)	317, 836
BsiSI	CCGG	4 cut(s)	57, 140, 169, 958
BslI	CCNNNNNNNGG	5 cut(s)	344, 359, 546, 625, 976
BsmAI	GTCTC	2 cut(s)	385, 682
BsnI	GGCC	2 cut(s)	317, 836
Bso31I	GGTCTC	1 cut(s)	682
Bsp119I	TTCGAA	1 cut(s)	815
Bsp143I	GATC	1 cut(s)	506
Bsp1720I	GCTNAGC	1 cut(s)	164
Bsp19I	CCATGG	1 cut(s)	663
BspACI	CCGC	3 cut(s)	21, 345, 644
BspANI	GGCC	2 cut(s)	317, 836
BspCNI	CTCAG	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	209
BspMAI	CTGCAG	1 cut(s)	390
BspPI	GGATC	1 cut(s)	514
BspQI	GCTCTTC	1 cut(s)	417
BspT104I	TTCGAA	1 cut(s)	815
BspTNI	GGTCTC	1 cut(s)	682
BsrDI	GCAATG	1 cut(s)	648
BsrI	ACTGG	3 cut(s)	585, 657, 678
BssECI	CCNNGG	4 cut(s)	231, 544, 663, 852
BssMI	GATC	1 cut(s)	506
BssNI	GRCGYC	1 cut(s)	494
BssT1I	CCWWGG	3 cut(s)	544, 663, 852
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	3 cut(s)	262, 357, 746
Bst6I	CTCTTC	1 cut(s)	417
BstACI	GRCGYC	1 cut(s)	494
BstBAI	YACGTR	1 cut(s)	104
BstBI	TTCGAA	1 cut(s)	815
BstC8I	GCNNGC	3 cut(s)	442, 492, 698
BstDEI	CTNAG	3 cut(s)	164, 380, 868
BstDSI	CCRYGG	1 cut(s)	663
BstF5I	GGATG	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	1 cut(s)	509
BstMAI	GTCTC	2 cut(s)	385, 682
BstMBI	GATC	1 cut(s)	506
BstMWI	GCNNNNNNNGC	5 cut(s)	342, 385, 650, 659, 842
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	2 cut(s)	804, 865
BstSCI	CCNGG	3 cut(s)	138, 168, 231
BstSFI	CTRYAG	2 cut(s)	386, 498
BstSNI	TACGTA	1 cut(s)	104
BstV1I	GCAGC	4 cut(s)	116, 388, 640, 857
BstV2I	GAAGAC	1 cut(s)	804
BstXI	CCANNNNNNTGG	1 cut(s)	664
BsuRI	GGCC	2 cut(s)	317, 836
BtgI	CCRYGG	1 cut(s)	663
BtrI	CACGTC	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	258, 664
Cac8I	GCNNGC	3 cut(s)	442, 492, 698
CfoI	GCGC	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	350
CseI	GACGC	1 cut(s)	483
Csp6I	GTAC	2 cut(s)	932, 980
CviAII	CATG	5 cut(s)	428, 640, 664, 801, 862
CviQI	GTAC	2 cut(s)	932, 980
DdeI	CTNAG	3 cut(s)	164, 380, 868
DpnI	GATC	1 cut(s)	508
DpnII	GATC	1 cut(s)	506
EaeI	YGGCCR	1 cut(s)	834
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
EciI	GGCGGA	2 cut(s)	36, 659
Eco105I	TACGTA	1 cut(s)	104
Eco130I	CCWWGG	3 cut(s)	544, 663, 852
Eco147I	AGGCCT	1 cut(s)	317
Eco31I	GGTCTC	1 cut(s)	682
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	2 cut(s)	12, 380
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	3 cut(s)	544, 663, 852
ErhI	CCWWGG	3 cut(s)	544, 663, 852
FaeI	CATG	5 cut(s)	431, 643, 667, 804, 865
FatI	CATG	5 cut(s)	427, 639, 663, 800, 861
FauNDI	CATATG	1 cut(s)	984
FblI	GTMKAC	1 cut(s)	106
Fnu4HI	GCNGC	4 cut(s)	130, 377, 654, 846
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	4 cut(s)	130, 377, 654, 846
FspBI	CTAG	3 cut(s)	176, 182, 527
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	4 cut(s)	130, 377, 654, 846
HaeIII	GGCC	2 cut(s)	317, 836
HapII	CCGG	4 cut(s)	57, 140, 169, 958
HgaI	GACGC	1 cut(s)	483
HhaI	GCGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	5 cut(s)	431, 643, 667, 804, 865
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HincII	GTYRAC	2 cut(s)	158, 859
HindII	GTYRAC	2 cut(s)	158, 859
HinfI	GANTC	6 cut(s)	108, 286, 485, 809, 821, 872
HpaII	CCGG	4 cut(s)	57, 140, 169, 958
HphI	GGTGA	3 cut(s)	44, 128, 758
Hpy166II	GTNNAC	5 cut(s)	107, 158, 353, 563, 859
Hpy188I	TCNGA	2 cut(s)	557, 690
Hpy188III	TCNNGA	1 cut(s)	825
Hpy8I	GTNNAC	5 cut(s)	107, 158, 353, 563, 859
HpyAV	CCTTC	1 cut(s)	455
HpyCH4III	ACNGT	3 cut(s)	262, 357, 746
HpyCH4IV	ACGT	3 cut(s)	40, 103, 154
HpyCH4V	TGCA	5 cut(s)	305, 388, 593, 800, 845
HpyF10VI	GCNNNNNNNGC	5 cut(s)	342, 385, 650, 659, 842
HpyF3I	CTNAG	3 cut(s)	164, 380, 868
HpySE526I	ACGT	3 cut(s)	40, 103, 154
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	5 cut(s)	431, 643, 667, 804, 865
HspAI	GCGC	1 cut(s)	249
Kzo9I	GATC	1 cut(s)	506
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	4 cut(s)	4, 23, 94, 172
Lsp1109I	GCAGC	4 cut(s)	116, 388, 640, 857
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	3 cut(s)	176, 182, 527
MaeII	ACGT	3 cut(s)	40, 103, 154
MaeIII	GTNAC	1 cut(s)	746
MalI	GATC	1 cut(s)	508
MboI	GATC	1 cut(s)	506
MboII	GAAGA	7 cut(s)	125, 257, 377, 434, 680, 804, 899
MfeI	CAATTG	1 cut(s)	924
MlsI	TGGCCA	1 cut(s)	836
MluCI	AATT	6 cut(s)	52, 73, 116, 480, 782, 924
MluNI	TGGCCA	1 cut(s)	836
MlyI	GAGTC	3 cut(s)	102, 818, 866
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	2 cut(s)	56, 802
Mox20I	TGGCCA	1 cut(s)	836
MroXI	GAANNNNTTC	2 cut(s)	285, 894
MscI	TGGCCA	1 cut(s)	836
MseI	TTAA	4 cut(s)	320, 570, 840, 1009
MslI	CAYNNNNRTG	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	836
MspA1I	CMGCKG	3 cut(s)	163, 400, 722
MspI	CCGG	4 cut(s)	57, 140, 169, 958
MspR9I	CCNGG	3 cut(s)	140, 170, 233
MunI	CAATTG	1 cut(s)	924
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	5 cut(s)	342, 385, 650, 659, 842
NciI	CCSGG	2 cut(s)	140, 170
NcoI	CCATGG	1 cut(s)	663
NdeI	CATATG	1 cut(s)	984
NdeII	GATC	1 cut(s)	506
NlaIII	CATG	5 cut(s)	431, 643, 667, 804, 865
NlaIV	GGNNCC	1 cut(s)	209
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	746
NspI	RCATGY	2 cut(s)	804, 865
NspV	TTCGAA	1 cut(s)	815
PceI	AGGCCT	1 cut(s)	317
PciI	ACATGT	1 cut(s)	861
PciSI	GCTCTTC	1 cut(s)	417
PdmI	GAANNNNTTC	2 cut(s)	285, 894
PfeI	GAWTC	3 cut(s)	286, 485, 821
PflMI	CCANNNNNTGG	1 cut(s)	359
PkrI	GCNGC	4 cut(s)	131, 378, 655, 847
PleI	GAGTC	3 cut(s)	102, 817, 866
PpsI	GAGTC	3 cut(s)	102, 817, 866
Ppu21I	YACGTR	1 cut(s)	104
PscI	ACATGT	1 cut(s)	861
PshBI	ATTAAT	1 cut(s)	840
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	390
PvuII	CAGCTG	3 cut(s)	163, 400, 722
RsaI	GTAC	2 cut(s)	933, 981
RsaNI	GTAC	2 cut(s)	932, 980
RseI	CAYNNNNRTG	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	4 cut(s)	320, 570, 840, 1009
SatI	GCNGC	4 cut(s)	130, 377, 654, 846
Sau3AI	GATC	1 cut(s)	506
Sau96I	GGNCC	1 cut(s)	350
ScaI	AGTACT	1 cut(s)	933
SchI	GAGTC	3 cut(s)	102, 818, 866
ScrFI	CCNGG	3 cut(s)	140, 170, 233
SfaNI	GCATC	1 cut(s)	56
SfcI	CTRYAG	2 cut(s)	386, 498
SfuI	TTCGAA	1 cut(s)	815
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	141
SnaBI	TACGTA	1 cut(s)	104
Sse9I	AATT	6 cut(s)	52, 73, 116, 480, 782, 924
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	3 cut(s)	21, 345, 644
SspMI	CTAG	3 cut(s)	176, 182, 527
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	3 cut(s)	138, 168, 231
StyI	CCWWGG	3 cut(s)	544, 663, 852
TaaI	ACNGT	3 cut(s)	262, 357, 746
TaiI	ACGT	3 cut(s)	43, 106, 157
TaqI	TCGA	4 cut(s)	50, 111, 807, 815
TasI	AATT	6 cut(s)	52, 73, 116, 480, 782, 924
TatI	WGTACW	1 cut(s)	931
TfiI	GAWTC	3 cut(s)	286, 485, 821
Tru1I	TTAA	4 cut(s)	320, 570, 840, 1009
Tru9I	TTAA	4 cut(s)	320, 570, 840, 1009
TscAI	CASTG	2 cut(s)	265, 664
TseFI	GTSAC	1 cut(s)	746
TseI	GCWGC	4 cut(s)	129, 376, 653, 845
Tsp45I	GTSAC	1 cut(s)	746
TspDTI	ATGAA	3 cut(s)	294, 965, 1001
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	2 cut(s)	265, 664
Van91I	CCANNNNNTGG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	350
VspI	ATTAAT	1 cut(s)	840
XapI	RAATTY	2 cut(s)	52, 116
XceI	RCATGY	2 cut(s)	804, 865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670
XmiI	GTMKAC	1 cut(s)	106
XmnI	GAANNNNTTC	2 cut(s)	285, 894
XspI	CTAG	3 cut(s)	176, 182, 527
ZrmI	AGTACT	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.