Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

OG0002019

Physical Location & Seq

Genomic Coordinates Forward (+)

200724 .. 201899

Gene Structure 1176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTTGGAGGGCGGCGCCAAATTCACTGGAATAATTGGTCTAACCAACCATGGTAACAACTTTGATGATTTGTCGCAAGGCTTCTACCACAAACTCCATGAGGGTGAGGGTACCAACATGTCCATCGACAGTATGCAAACGAGCAACGATGGAGGCTCTGTGACCATGTCTGTAGACAACAGCAGCGTTGCTTCAAATACTAATGATTCCCACACTCGCATCTTGAACCACCAAGGGCTGCGGCGACGTGTTAAGGATAACTATTCTGTGCAACAGAGTGTTAATCGACGAGGAAGAGTCACACATGCTCTAAGTCATGATCAACTTGCTCGAGCTCTACTGGACAGCCATTCCTTGACAGAGGGGCTTGAGAATTACGAGGACTGGACAATTGACTTAAGAAAGCTAAACATGGGTGAAGCTTTTGCACAAGGTGCTTTTGGGAAGCTATATAGAGGTAGCTACAATGGTGAGGATGTTGCCATCAAACTTTTGGAGCGGCCTGAAAATGACCCAGAAAGGGCTCAGCTGATGGAGCAGCAGTTTCAACAGGAAGTCAAGATGCTGGCTACATTGAAGCATCCAAACATAGTTCGTTTCATTGGTGCCTGCCGTAAGCCAATGGTTTGGTGCATTGTAACAGAGTATGCTAAGGGGGGTTCACTTAGGCAGTTCTTGGCGAAGCGGCAGAGCCGATCGGTTCCATTGAAATTAGCAGTCAAGCAAGCTTTGGATGTTGCGAGGGGTTTTGCATATGTTCATGGGCTCGGTCTGATTCACCGGGACTTGAAATCTGACAACCTGTTGATTTCTTCAGACAAATCTATAAAAATTGCTGATTTTGGAGTTGCCCGTATTGAGGTGCAGACGGAAGGAATGACTCCGGAGACTGGGACATACCGCTGGATGGCGCCATATAAATGCGCCTTATCTTTTGGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

315

Amino Acids

35.1

Weight (kDa)

8.64

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	137 - 305	1.5e-37	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	143 - 305	6e-37	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24360 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170
fragaria_vesca	FvH4_4g00150 FvH4_4g00150 FvH4_4g00150 FvH4_4g00150
malus_domestica	MD00G1091600.v1.1 MD04G1001200.v1.1 MD04G1001300.v1.1 MD13G1286000.v1.1
prunus_persica	Prupe.1G001200_v2.0.a1 Prupe.1G001300_v2.0.a1
pyrus_communis	pycom04g00180 pycom04g00190 pycom420g00210
rosa_chinensis	RchiOBHm_Chr3g0494021 RchiOBHm_Chr4g0384771
rosa_laevigata	RLG00000010273 RLG00000022687
rosa_multiflora	Rmu_sc0001322.1_g000022 Rmu_sc0003412.1_g000004
rosa_roxburghii	Rroxscaffold_5G00332830 Rroxscaffold_6G00391360
rosa_rugosa	Rorug03G0263700 Rorug03G0297500 Rorug03G0297500
rosa_samantha	Rh3AG313300 Rh3BG349400 Rh3CG346200 Rh3DG348700 Rh4AG001100 Rh4BG001000 Rh4CG000900 Rh4DG001000
rosa_wichuraiana	Rw3G027420 Rw4G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	110
AccB1I	GGYRCC	4 cut(s)	14, 110, 605, 910
AccBSI	CCGCTC	1 cut(s)	499
AccI	GTMKAC	1 cut(s)	174
AccIII	TCCGGA	1 cut(s)	883
AciI	CCGC	5 cut(s)	12, 241, 499, 685, 901
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	798
AcyI	GRCGYC	2 cut(s)	15, 911
AdeI	CACNNNGTG	1 cut(s)	434
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	4 cut(s)	520, 859, 890, 907
AflII	CTTAAG	1 cut(s)	397
AflIII	ACRYGT	2 cut(s)	117, 247
AgsI	TTSAA	6 cut(s)	195, 226, 548, 577, 709, 790
AjiI	CACGTC	1 cut(s)	248
AluBI	AGCT	7 cut(s)	335, 406, 422, 448, 462, 529, 728
AluI	AGCT	7 cut(s)	335, 406, 422, 448, 462, 529, 728
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	881
Ama87I	CYCGRG	1 cut(s)	330
Aor13HI	TCCGGA	1 cut(s)	883
AoxI	GGCC	1 cut(s)	500
ApeKI	GCWGC	3 cut(s)	183, 238, 538
ApoI	RAATTY	1 cut(s)	20
Asp718I	GGTACC	1 cut(s)	110
AspLEI	GCGC	3 cut(s)	17, 913, 926
AsuC2I	CCSGG	1 cut(s)	782
AsuHPI	GGTGA	4 cut(s)	116, 428, 482, 770
AvaI	CYCGRG	1 cut(s)	330
BanI	GGYRCC	4 cut(s)	14, 110, 605, 910
BanII	GRGCYC	3 cut(s)	337, 526, 768
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	3 cut(s)	195, 225, 550
BccI	CCATC	5 cut(s)	131, 143, 491, 526, 901
BceAI	ACGGC	1 cut(s)	597
BclI	TGATCA	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	782
BcoDI	GTCTC	1 cut(s)	881
BfmI	CTRYAG	1 cut(s)	171
BfoI	RGCGCY	2 cut(s)	18, 914
BfrI	CTTAAG	1 cut(s)	397
BisI	GCNGC	7 cut(s)	13, 184, 239, 242, 500, 539, 686
BlpI	GCTNAGC	1 cut(s)	525
BlsI	GCNGC	7 cut(s)	14, 185, 240, 243, 501, 540, 687
Bme1390I	CCNGG	1 cut(s)	782
BmeT110I	CYCGRG	1 cut(s)	330
BmgBI	CACGTC	1 cut(s)	248
BmiI	GGNNCC	5 cut(s)	16, 112, 607, 702, 912
BmrFI	CCNGG	1 cut(s)	782
BmrI	ACTGGG	1 cut(s)	900
BmsI	GCATC	3 cut(s)	228, 552, 589
BmuI	ACTGGG	1 cut(s)	900
Bpu10I	CCTNAGC	1 cut(s)	651
Bpu1102I	GCTNAGC	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	1 cut(s)	782
BsaHI	GRCGYC	2 cut(s)	15, 911
BsaJI	CCNNGG	2 cut(s)	49, 232
BsaWI	WCCGGW	1 cut(s)	883
BsaXI	ACNNNNNCTCC	4 cut(s)	144, 174, 527, 557
Bsc4I	CCNNNNNNNGG	4 cut(s)	520, 859, 890, 907
Bse1I	ACTGG	4 cut(s)	31, 345, 389, 895
BseAI	TCCGGA	1 cut(s)	883
BseDI	CCNNGG	2 cut(s)	49, 232
BseGI	GGATG	4 cut(s)	481, 580, 739, 912
BseLI	CCNNNNNNNGG	4 cut(s)	520, 859, 890, 907
BseMII	CTCAG	1 cut(s)	539
BseNI	ACTGG	4 cut(s)	31, 345, 389, 895
BseXI	GCAGC	3 cut(s)	195, 225, 550
BsgI	GTGCAG	1 cut(s)	884
Bsh1285I	CGRYCG	1 cut(s)	698
BshFI	GGCC	1 cut(s)	502
BshNI	GGYRCC	4 cut(s)	14, 110, 605, 910
BsiEI	CGRYCG	1 cut(s)	698
BsiHKAI	GWGCWC	1 cut(s)	337
BsiHKCI	CYCGRG	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	781, 884
BslFI	GGGAC	2 cut(s)	797, 907
BslI	CCNNNNNNNGG	4 cut(s)	520, 859, 890, 907
BsmAI	GTCTC	1 cut(s)	881
BsmFI	GGGAC	2 cut(s)	797, 907
BsnI	GGCC	1 cut(s)	502
BsoBI	CYCGRG	1 cut(s)	330
Bsp1286I	GDGCHC	3 cut(s)	337, 526, 768
Bsp13I	TCCGGA	1 cut(s)	883
Bsp143I	GATC	2 cut(s)	319, 695
Bsp1720I	GCTNAGC	1 cut(s)	525
Bsp19I	CCATGG	1 cut(s)	49
BspACI	CCGC	5 cut(s)	12, 241, 499, 685, 901
BspANI	GGCC	1 cut(s)	502
BspCNI	CTCAG	1 cut(s)	538
BspEI	TCCGGA	1 cut(s)	883
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	5 cut(s)	16, 112, 607, 702, 912
BspT107I	GGYRCC	4 cut(s)	14, 110, 605, 910
BspTI	CTTAAG	1 cut(s)	397
BsrBI	CCGCTC	1 cut(s)	499
BsrI	ACTGG	4 cut(s)	31, 345, 389, 895
BssECI	CCNNGG	2 cut(s)	49, 232
BssMI	GATC	2 cut(s)	319, 695
BssNI	GRCGYC	2 cut(s)	15, 911
BssT1I	CCWWGG	2 cut(s)	49, 232
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	289
BstACI	GRCGYC	2 cut(s)	15, 911
BstAFI	CTTAAG	1 cut(s)	397
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	3 cut(s)	567, 610, 726
BstDEI	CTNAG	4 cut(s)	311, 525, 651, 665
BstDSI	CCRYGG	1 cut(s)	49
BstF5I	GGATG	4 cut(s)	481, 580, 739, 912
BstH2I	RGCGCY	2 cut(s)	18, 914
BstHHI	GCGC	3 cut(s)	17, 913, 926
BstKTI	GATC	2 cut(s)	322, 698
BstMAI	GTCTC	1 cut(s)	881
BstMBI	GATC	2 cut(s)	319, 695
BstMCI	CGRYCG	1 cut(s)	698
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 535
BstNSI	RCATGY	2 cut(s)	121, 308
BstSCI	CCNGG	1 cut(s)	780
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	3 cut(s)	195, 225, 550
BstXI	CCANNNNNNTGG	1 cut(s)	627
BsuRI	GGCC	1 cut(s)	502
BtgI	CCRYGG	1 cut(s)	49
BtrI	CACGTC	1 cut(s)	248
BtsCI	GGATG	4 cut(s)	481, 580, 739, 912
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	3 cut(s)	567, 610, 726
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	3 cut(s)	17, 913, 926
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	8 cut(s)	50, 98, 118, 166, 305, 317, 412, 761
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	4 cut(s)	311, 525, 651, 665
DinI	GGCGCC	2 cut(s)	16, 912
DpnI	GATC	2 cut(s)	321, 697
DpnII	GATC	2 cut(s)	319, 695
DraIII	CACNNNGTG	1 cut(s)	434
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Ecl136II	GAGCTC	1 cut(s)	335
Eco130I	CCWWGG	2 cut(s)	49, 232
Eco24I	GRGCYC	3 cut(s)	337, 526, 768
Eco53kI	GAGCTC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	798
Eco88I	CYCGRG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	335
EcoT14I	CCWWGG	2 cut(s)	49, 232
EcoT38I	GRGCYC	3 cut(s)	337, 526, 768
EgeI	GGCGCC	2 cut(s)	16, 912
EheI	GGCGCC	2 cut(s)	16, 912
ErhI	CCWWGG	2 cut(s)	49, 232
FaeI	CATG	8 cut(s)	53, 101, 121, 169, 308, 320, 415, 764
FaqI	GGGAC	2 cut(s)	797, 907
FatI	CATG	8 cut(s)	49, 97, 117, 165, 304, 316, 411, 760
FauNDI	CATATG	1 cut(s)	754
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	7 cut(s)	13, 184, 239, 242, 500, 539, 686
FokI	GGATG	4 cut(s)	488, 567, 746, 919
FriOI	GRGCYC	3 cut(s)	337, 526, 768
Fsp4HI	GCNGC	7 cut(s)	13, 184, 239, 242, 500, 539, 686
GlaI	GCGC	3 cut(s)	16, 912, 925
GluI	GCNGC	7 cut(s)	13, 184, 239, 242, 500, 539, 686
HaeII	RGCGCY	2 cut(s)	18, 914
HaeIII	GGCC	1 cut(s)	502
HapII	CCGG	2 cut(s)	781, 884
HhaI	GCGC	3 cut(s)	17, 913, 926
Hin1I	GRCGYC	2 cut(s)	15, 911
Hin1II	CATG	8 cut(s)	53, 101, 121, 169, 308, 320, 415, 764
Hin6I	GCGC	3 cut(s)	15, 911, 924
HinP1I	GCGC	3 cut(s)	15, 911, 924
HindIII	AAGCTT	2 cut(s)	420, 726
HinfI	GANTC	4 cut(s)	206, 297, 775, 880
HpaII	CCGG	2 cut(s)	781, 884
HphI	GGTGA	4 cut(s)	116, 428, 482, 770
Hpy166II	GTNNAC	2 cut(s)	175, 662
Hpy188I	TCNGA	3 cut(s)	774, 796, 817
Hpy188III	TCNNGA	4 cut(s)	223, 317, 559, 884
Hpy8I	GTNNAC	2 cut(s)	175, 662
Hpy99I	CGWCG	2 cut(s)	249, 291
HpyAV	CCTTC	1 cut(s)	866
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	6 cut(s)	136, 271, 428, 633, 752, 865
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 535
HpyF3I	CTNAG	4 cut(s)	311, 525, 651, 665
HpySE526I	ACGT	1 cut(s)	247
Hsp92I	GRCGYC	2 cut(s)	15, 911
Hsp92II	CATG	8 cut(s)	53, 101, 121, 169, 308, 320, 415, 764
HspAI	GCGC	3 cut(s)	15, 911, 924
KasI	GGCGCC	2 cut(s)	14, 910
Kpn2I	TCCGGA	1 cut(s)	883
KpnI	GGTACC	1 cut(s)	114
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	319, 695
LmnI	GCTCC	2 cut(s)	496, 535
Lsp1109I	GCAGC	3 cut(s)	195, 225, 550
LweI	GCATC	3 cut(s)	228, 552, 589
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	5 cut(s)	53, 160, 298, 637, 938
MalI	GATC	2 cut(s)	321, 697
MbiI	CCGCTC	1 cut(s)	499
MboI	GATC	2 cut(s)	319, 695
MboII	GAAGA	2 cut(s)	306, 804
MfeI	CAATTG	1 cut(s)	390
MhlI	GDGCHC	3 cut(s)	337, 526, 768
MluCI	AATT	6 cut(s)	20, 33, 373, 390, 710, 831
Mly113I	GGCGCC	2 cut(s)	15, 911
MlyI	GAGTC	2 cut(s)	306, 874
MroI	TCCGGA	1 cut(s)	883
MseI	TTAA	3 cut(s)	252, 282, 398
MslI	CAYNNNNRTG	2 cut(s)	102, 919
MspA1I	CMGCKG	2 cut(s)	529, 903
MspCI	CTTAAG	1 cut(s)	397
MspI	CCGG	2 cut(s)	781, 884
MspR9I	CCNGG	1 cut(s)	782
MunI	CAATTG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	434, 535
NarI	GGCGCC	2 cut(s)	15, 911
NciI	CCSGG	1 cut(s)	782
NcoI	CCATGG	1 cut(s)	49
NdeI	CATATG	1 cut(s)	754
NdeII	GATC	2 cut(s)	319, 695
NlaIII	CATG	8 cut(s)	53, 101, 121, 169, 308, 320, 415, 764
NlaIV	GGNNCC	5 cut(s)	16, 112, 607, 702, 912
NmuCI	GTSAC	2 cut(s)	160, 298
NspI	RCATGY	2 cut(s)	121, 308
PaeR7I	CTCGAG	1 cut(s)	330
PagI	TCATGA	1 cut(s)	316
PciI	ACATGT	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	206, 775
PflFI	GACNNNGTC	1 cut(s)	166
PkrI	GCNGC	7 cut(s)	14, 185, 240, 243, 501, 540, 687
Ple19I	CGATCG	1 cut(s)	698
PleI	GAGTC	2 cut(s)	305, 874
PluTI	GGCGCC	2 cut(s)	18, 914
PpsI	GAGTC	2 cut(s)	305, 874
PscI	ACATGT	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	337
PspN4I	GGNNCC	5 cut(s)	16, 112, 607, 702, 912
PspXI	VCTCGAGB	1 cut(s)	330
PsyI	GACNNNGTC	1 cut(s)	166
PvuI	CGATCG	1 cut(s)	698
PvuII	CAGCTG	1 cut(s)	529
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	2 cut(s)	102, 919
SacI	GAGCTC	1 cut(s)	337
SaqAI	TTAA	3 cut(s)	252, 282, 398
SatI	GCNGC	7 cut(s)	13, 184, 239, 242, 500, 539, 686
Sau3AI	GATC	2 cut(s)	319, 695
SchI	GAGTC	2 cut(s)	306, 874
ScrFI	CCNGG	1 cut(s)	782
SduI	GDGCHC	3 cut(s)	337, 526, 768
SfaNI	GCATC	3 cut(s)	228, 552, 589
SfcI	CTRYAG	1 cut(s)	171
SfoI	GGCGCC	2 cut(s)	16, 912
Sfr274I	CTCGAG	1 cut(s)	330
SlaI	CTCGAG	1 cut(s)	330
SmiMI	CAYNNNNRTG	2 cut(s)	102, 919
SmlI	CTYRAG	3 cut(s)	330, 368, 397
SmoI	CTYRAG	3 cut(s)	330, 368, 397
Sse9I	AATT	6 cut(s)	20, 33, 373, 390, 710, 831
SsiI	CCGC	5 cut(s)	12, 241, 499, 685, 901
SspDI	GGCGCC	2 cut(s)	14, 910
SstI	GAGCTC	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	780
StyI	CCWWGG	2 cut(s)	49, 232
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	3 cut(s)	126, 286, 331
TaqII	GACCGA	1 cut(s)	758
TasI	AATT	6 cut(s)	20, 33, 373, 390, 710, 831
TauI	GCSGC	4 cut(s)	15, 244, 502, 688
TfiI	GAWTC	2 cut(s)	206, 775
Tru1I	TTAA	3 cut(s)	252, 282, 398
Tru9I	TTAA	3 cut(s)	252, 282, 398
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	2 cut(s)	160, 298
TseI	GCWGC	3 cut(s)	183, 238, 538
Tsp45I	GTSAC	2 cut(s)	160, 298
TspDTI	ATGAA	2 cut(s)	589, 749
TspGWI	ACGGA	1 cut(s)	884
TspRI	CASTG	1 cut(s)	31
Tth111I	GACNNNGTC	1 cut(s)	166
Vha464I	CTTAAG	1 cut(s)	397
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	2 cut(s)	121, 308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XhoI	CTCGAG	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.