Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007516

Physical Location & Seq

Genomic Coordinates Forward (+)

12937753 .. 12938707

Gene Structure 955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTTTTGGGTGATGATGATGATGGATTTCCTACTCATTTACTTCAATTTTATCTCCACCGAAAGTTTAGATTCTGCCCAAGACTTCTTCATAACAAATATTCCCCCATGAATGTAGATTACTACGGTAAAATTTCAGAATGTATTGCCATGTGGTTGGGCCGGAAATGCTGCTGGACCTCTTACAGGTCCAGTTTTCCAGCGGCGGGAGGGAGAGTGATAGACTGGAAAGGCTGCCGTGTGCTGGGAGTGCTGGCGACGTCGCGGTCAATCGGAGACCATTACCTGAAGCCGTACGTGATATCGGAGCCGGAGGTGACCATCAGTAAGAGGACAGGGTCGTCCGACTTTCTGGTGATAGCGAGCGACGGACTTTGGGACGTCGTATCGAATGAGTTTGCGTGTCAGGTTGTGACGAGATGTCTGGATGCACAAATTAAGTTGAAGTTTTCGGAGGGGATGAGCGGAGGTCCGGCGGAAAATGCGACGGCCTTGCTGGCGCAACTGGCACTGGCTCGAGGGAGCAAAGATAATATCACCGTCATAGTGGTTGAGCTCAAGAAGTCCATGACCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001691 GO:0003006 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009791 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010030 GO:0010154 GO:0010162 GO:0010431 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019208 GO:0019212 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0023051 GO:0023057 GO:0030234 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048583 GO:0048585 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0065009 GO:0071695 GO:0071704 GO:0080050 GO:0098772 GO:0140096 GO:1900140 GO:1901419 GO:1901420 GO:1901564 GO:1902040 GO:1905957 GO:1905958 GO:2000026 GO:2000033 GO:2000034 GO:2000241 GO:2000243 GO:2000693

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

192

Amino Acids

21.37

Weight (kDa)

8.66

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	68 - 179	3e-25	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007516)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06391
rosa_chinensis	RchiOBHm_Chr0c19g0499981 RchiOBHm_Chr2g0121371 RchiOBHm_Chr2g0124851 RchiOBHm_Chr2g0125661 RchiOBHm_Chr2g0131171 RchiOBHm_Chr2g0134161 RchiOBHm_Chr2g0165291 RchiOBHm_Chr3g0462421 RchiOBHm_Chr3g0497621 RchiOBHm_Chr4g0401911 RchiOBHm_Chr5g0067131 RchiOBHm_Chr7g0194981 RchiOBHm_Chr7g0195241 RchiOBHm_Chr7g0200621
rosa_laevigata	RLG00000025358
rosa_multiflora	Rmu_sc0000215.1_g000033 Rmu_sc0010428.1_g000007 Rmu_sc0016199.1_g000006
rosa_roxburghii	Rroxscaffold_5G00343890 Rroxscaffold_5G00387740 Rroxscaffold_6G00424250
rosa_rugosa	Rorug02G0437900
rosa_samantha	Rh3DG069600
rosa_wichuraiana	Rw3G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	265, 340
AatII	GACGTC	2 cut(s)	263, 384
AccBSI	CCGCTC	1 cut(s)	465
AccII	CGCG	1 cut(s)	265
AciI	CCGC	6 cut(s)	203, 206, 265, 465, 476, 573
AcsI	RAATTY	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	308
AcyI	GRCGYC	2 cut(s)	260, 381
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	3 cut(s)	186, 206, 244
AgsI	TTSAA	2 cut(s)	47, 445
AhdI	GACNNNNNGTC	1 cut(s)	420
AluBI	AGCT	1 cut(s)	556
AluI	AGCT	1 cut(s)	556
Alw21I	GWGCWC	1 cut(s)	558
Alw26I	GTCTC	1 cut(s)	270
Ama87I	CYCGRG	1 cut(s)	516
AoxI	GGCC	2 cut(s)	160, 489
ApeKI	GCWGC	2 cut(s)	171, 234
ApoI	RAATTY	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	4 cut(s)	160, 177, 189, 470
AsuHPI	GGTGA	4 cut(s)	23, 328, 367, 529
AvaI	CYCGRG	1 cut(s)	516
AvaII	GGWCC	3 cut(s)	177, 189, 470
BanII	GRGCYC	1 cut(s)	558
Bbv12I	GWGCWC	1 cut(s)	558
BbvI	GCAGC	2 cut(s)	158, 221
BccI	CCATC	2 cut(s)	17, 329
BceAI	ACGGC	3 cut(s)	222, 277, 504
BcgI	CGANNNNNNTGC	2 cut(s)	475, 509
BcoDI	GTCTC	1 cut(s)	270
BglI	GCCNNNNNGGC	1 cut(s)	497
BisI	GCNGC	3 cut(s)	172, 204, 235
BlsI	GCNGC	3 cut(s)	173, 205, 236
Bme18I	GGWCC	3 cut(s)	177, 189, 470
BmeRI	GACNNNNNGTC	1 cut(s)	420
BmeT110I	CYCGRG	1 cut(s)	516
BmgT120I	GGNCC	4 cut(s)	160, 177, 189, 470
BmiI	GGNNCC	1 cut(s)	309
BmsI	GCATC	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	542
BsaAI	YACGTR	1 cut(s)	298
BsaHI	GRCGYC	2 cut(s)	260, 381
BsaI	GGTCTC	1 cut(s)	270
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 206, 244
Bse1I	ACTGG	4 cut(s)	192, 230, 510, 516
BseGI	GGATG	2 cut(s)	433, 465
BseLI	CCNNNNNNNGG	3 cut(s)	186, 206, 244
BseNI	ACTGG	4 cut(s)	192, 230, 510, 516
BseXI	GCAGC	2 cut(s)	158, 221
BseYI	CCCAGC	1 cut(s)	244
Bsh1236I	CGCG	1 cut(s)	265
BshFI	GGCC	2 cut(s)	162, 491
BsiHKAI	GWGCWC	1 cut(s)	558
BsiHKCI	CYCGRG	1 cut(s)	516
BsiSI	CCGG	3 cut(s)	163, 311, 473
BsiWI	CGTACG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	3 cut(s)	186, 206, 244
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	2 cut(s)	162, 491
Bso31I	GGTCTC	1 cut(s)	270
BsoBI	CYCGRG	1 cut(s)	516
Bsp1286I	GDGCHC	1 cut(s)	558
BspACI	CCGC	6 cut(s)	203, 206, 265, 465, 476, 573
BspANI	GGCC	2 cut(s)	162, 491
BspFNI	CGCG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	309
BspTNI	GGTCTC	1 cut(s)	270
BsrBI	CCGCTC	1 cut(s)	465
BsrI	ACTGG	4 cut(s)	192, 230, 510, 516
BssNI	GRCGYC	2 cut(s)	260, 381
Bst4CI	ACNGT	2 cut(s)	128, 541
BstACI	GRCGYC	2 cut(s)	260, 381
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	3 cut(s)	255, 364, 498
BstEII	GGTNACC	1 cut(s)	316
BstENI	CCTNNNNNAGG	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	433, 465
BstFNI	CGCG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	502
BstMAI	GTCTC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	5 cut(s)	168, 250, 482, 497, 506
BstPI	GGTNACC	1 cut(s)	316
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	2 cut(s)	158, 221
BstXI	CCANNNNNNTGG	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	162, 491
BtsCI	GGATG	2 cut(s)	433, 465
BtsIMutI	CAGTG	1 cut(s)	509
Cac8I	GCNNGC	3 cut(s)	255, 364, 498
CfoI	GCGC	1 cut(s)	502
Cfr13I	GGNCC	4 cut(s)	160, 177, 189, 470
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	3 cut(s)	109, 151, 568
CviJI	RGCY	7 cut(s)	162, 234, 292, 310, 491, 515, 556
CviKI_1	RGCY	7 cut(s)	162, 234, 292, 310, 491, 515, 556
CviQI	GTAC	1 cut(s)	295
DrdI	GACNNNNNNGTC	2 cut(s)	265, 340
DriI	GACNNNNNGTC	1 cut(s)	420
DseDI	GACNNNNNNGTC	2 cut(s)	265, 340
Eam1105I	GACNNNNNGTC	1 cut(s)	420
EciI	GGCGGA	1 cut(s)	491
Ecl136II	GAGCTC	1 cut(s)	556
Eco24I	GRGCYC	1 cut(s)	558
Eco31I	GGTCTC	1 cut(s)	270
Eco32I	GATATC	1 cut(s)	303
Eco47I	GGWCC	3 cut(s)	177, 189, 470
Eco53kI	GAGCTC	1 cut(s)	556
Eco57I	CTGAAG	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	516
Eco91I	GGTNACC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	556
EcoNI	CCTNNNNNAGG	1 cut(s)	184
EcoO65I	GGTNACC	1 cut(s)	316
EcoRV	GATATC	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	558
FaeI	CATG	3 cut(s)	112, 154, 571
FaiI	YATR	5 cut(s)	93, 110, 152, 545, 569
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	3 cut(s)	108, 150, 567
FauI	CCCGC	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	172, 204, 235
FokI	GGATG	2 cut(s)	440, 472
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	3 cut(s)	172, 204, 235
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	3 cut(s)	172, 204, 235
GsaI	CCCAGC	1 cut(s)	248
HaeIII	GGCC	2 cut(s)	162, 491
HapII	CCGG	3 cut(s)	163, 311, 473
HhaI	GCGC	1 cut(s)	502
Hin1I	GRCGYC	2 cut(s)	260, 381
Hin1II	CATG	3 cut(s)	112, 154, 571
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HinfI	GANTC	1 cut(s)	72
HpaII	CCGG	3 cut(s)	163, 311, 473
HphI	GGTGA	4 cut(s)	23, 328, 367, 529
Hpy188I	TCNGA	5 cut(s)	139, 275, 307, 346, 454
Hpy188III	TCNNGA	2 cut(s)	425, 559
Hpy99I	CGWCG	5 cut(s)	262, 265, 371, 386, 490
HpyCH4III	ACNGT	2 cut(s)	128, 541
HpyCH4IV	ACGT	3 cut(s)	260, 297, 381
HpyCH4V	TGCA	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	5 cut(s)	168, 250, 482, 497, 506
HpySE526I	ACGT	3 cut(s)	260, 297, 381
Hsp92I	GRCGYC	2 cut(s)	260, 381
Hsp92II	CATG	3 cut(s)	112, 154, 571
HspAI	GCGC	1 cut(s)	500
LmnI	GCTCC	2 cut(s)	307, 522
Lsp1109I	GCAGC	2 cut(s)	158, 221
LweI	GCATC	1 cut(s)	418
MaeII	ACGT	3 cut(s)	260, 297, 381
MaeIII	GTNAC	2 cut(s)	316, 412
MbiI	CCGCTC	1 cut(s)	465
MboII	GAAGA	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	3 cut(s)	47, 132, 435
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	7 cut(s)	190, 203, 307, 324, 448, 461, 512
MseI	TTAA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	3 cut(s)	163, 311, 473
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	5 cut(s)	168, 250, 482, 497, 506
NlaIII	CATG	3 cut(s)	112, 154, 571
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	2 cut(s)	316, 412
PaeR7I	CTCGAG	1 cut(s)	516
PfeI	GAWTC	1 cut(s)	72
Pfl23II	CGTACG	1 cut(s)	294
PflFI	GACNNNGTC	1 cut(s)	337
PkrI	GCNGC	3 cut(s)	173, 205, 236
Ppu21I	YACGTR	1 cut(s)	298
Psp124BI	GAGCTC	1 cut(s)	558
PspEI	GGTNACC	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	244
PspLI	CGTACG	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	4 cut(s)	160, 177, 189, 470
PspXI	VCTCGAGB	1 cut(s)	516
PsyI	GACNNNGTC	1 cut(s)	337
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SacI	GAGCTC	1 cut(s)	558
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	3 cut(s)	172, 204, 235
Sau96I	GGNCC	4 cut(s)	160, 177, 189, 470
SduI	GDGCHC	1 cut(s)	558
SfaNI	GCATC	1 cut(s)	418
Sfr274I	CTCGAG	1 cut(s)	516
SinI	GGWCC	3 cut(s)	177, 189, 470
SlaI	CTCGAG	1 cut(s)	516
SmlI	CTYRAG	2 cut(s)	516, 557
SmoI	CTYRAG	2 cut(s)	516, 557
Sse9I	AATT	3 cut(s)	47, 132, 435
SsiI	CCGC	6 cut(s)	203, 206, 265, 465, 476, 573
SspI	AATATT	1 cut(s)	101
SstI	GAGCTC	1 cut(s)	558
TaaI	ACNGT	2 cut(s)	128, 541
TaiI	ACGT	3 cut(s)	263, 300, 384
TaqI	TCGA	2 cut(s)	389, 517
TasI	AATT	3 cut(s)	47, 132, 435
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	2 cut(s)	316, 412
TseI	GCWGC	2 cut(s)	171, 234
Tsp45I	GTSAC	2 cut(s)	316, 412
TspDTI	ATGAA	2 cut(s)	80, 125
TspGWI	ACGGA	1 cut(s)	384
TspRI	CASTG	1 cut(s)	516
Tth111I	GACNNNGTC	1 cut(s)	337
VpaK11BI	GGWCC	3 cut(s)	177, 189, 470
XagI	CCTNNNNNAGG	1 cut(s)	184
XapI	RAATTY	1 cut(s)	132
XhoI	CTCGAG	1 cut(s)	516
ZraI	GACGTC	2 cut(s)	261, 382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.