RchiOBHm_Chr6g0273881

MRN-interacting protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
34879084 .. 34880706
1623 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 423 bp
ATGATGCTTCTGGGTCTGCGGATACAGAAAATGGTGGTGTCTATGAGCTTCAAAATCGTAGACCAGTCATCTCTAAGAGGGATTCCAACAAACATGTGCACTCCCCCGCAGGTGGATGTGGAGAACTGGAGGTGCGAGTTGACAATAAACAAGAACACTTCAAATTGGAGCCATCTCATGATGCAAGATGACAAGGAATCAAGAAAATTGCATGCGACAAAGGCTTCACTTACAGGTGCTTCAAAGTGGAATGACTACGTAACCGAGGATGATAATGATGGCTTGAGAATCATCAACAGAAAAAGCCGTGAAGAGAATACAGAGCAATGGAGTAATGAAACAATAGCAAACTATGAATATGAGACGGTAACAACTGATGACAGGGTAGAAGATGACATCCATCCTGATTTCTTGCAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

16.26

Weight (kDa)

4.82

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 100
Acc36I ACCTGC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 60
AciI CCGC 2 cut(s) 19, 107
AfiI CCNNNNNNNGG 1 cut(s) 112
AflIII ACRYGT 1 cut(s) 93
AgsI TTSAA 3 cut(s) 52, 162, 243
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 1 cut(s) 356
Alw44I GTGCAC 1 cut(s) 97
ApaLI GTGCAC 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 101
BccI CCATC 3 cut(s) 180, 272, 408
BceAI ACGGC 1 cut(s) 291
BciVI GTATCC 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 100
BfuI GTATCC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 170
BmsI GCATC 1 cut(s) 171
BpmI CTGGAG 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 304
BsaAI YACGTR 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 2 cut(s) 64, 131
Bse3DI GCAATG 1 cut(s) 332
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 4 cut(s) 121, 274, 396, 400
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMI GCAATG 1 cut(s) 332
BseNI ACTGG 2 cut(s) 64, 131
BseSI GKGCMC 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 356
BsmBI CGTCTC 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 101
BspACI CCGC 2 cut(s) 19, 107
BspHI TCATGA 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 170
BspMI ACCTGC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 332
BsrI ACTGG 2 cut(s) 64, 131
BssECI CCNNGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 306
BstBAI YACGTR 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 74
BstF5I GGATG 4 cut(s) 121, 274, 396, 400
BstMAI GTCTC 1 cut(s) 356
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNSI RCATGY 2 cut(s) 97, 215
BstSLI GKGCMC 1 cut(s) 101
BstSNI TACGTA 1 cut(s) 259
BsuI GTATCC 1 cut(s) 15
BtsCI GGATG 4 cut(s) 121, 274, 396, 400
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 213
CciI TCATGA 1 cut(s) 177
CviAII CATG 3 cut(s) 94, 178, 212
CviJI RGCY 6 cut(s) 48, 171, 224, 282, 306, 420
CviKI_1 RGCY 6 cut(s) 48, 171, 224, 282, 306, 420
DdeI CTNAG 1 cut(s) 74
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco105I TACGTA 1 cut(s) 259
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 3 cut(s) 97, 181, 215
FaiI YATR 6 cut(s) 44, 95, 179, 213, 354, 360
FatI CATG 3 cut(s) 93, 177, 211
FauI CCCGC 1 cut(s) 114
FblI GTMKAC 1 cut(s) 60
FokI GGATG 4 cut(s) 128, 281, 383, 387
GsuI CTGGAG 1 cut(s) 148
Hin1II CATG 3 cut(s) 97, 181, 215
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 3 cut(s) 82, 197, 288
Hpy166II GTNNAC 3 cut(s) 61, 99, 141
Hpy188III TCNNGA 3 cut(s) 178, 201, 404
Hpy8I GTNNAC 3 cut(s) 61, 99, 141
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 4 cut(s) 99, 184, 211, 415
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 3 cut(s) 97, 181, 215
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 6 cut(s) 77, 95, 112, 219, 367, 417
LweI GCATC 1 cut(s) 171
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 259, 367
MboII GAAGA 2 cut(s) 323, 401
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 2 cut(s) 163, 206
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 3 cut(s) 71, 123, 259
MwoI GCNNNNNNNGC 1 cut(s) 221
NlaIII CATG 3 cut(s) 97, 181, 215
NlaIV GGNNCC 1 cut(s) 170
NspI RCATGY 2 cut(s) 97, 215
PaeI GCATGC 1 cut(s) 215
PagI TCATGA 1 cut(s) 177
PaqCI CACCTGC 1 cut(s) 100
PciI ACATGT 1 cut(s) 93
PfeI GAWTC 3 cut(s) 82, 197, 288
Ppu21I YACGTR 1 cut(s) 259
PscI ACATGT 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 170
SduI GDGCHC 1 cut(s) 101
SetI ASST 5 cut(s) 50, 114, 134, 238, 261
SfaNI GCATC 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
SnaBI TACGTA 1 cut(s) 259
SphI GCATGC 1 cut(s) 215
Sse9I AATT 2 cut(s) 163, 206
SsiI CCGC 2 cut(s) 19, 107
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 1 cut(s) 261
TasI AATT 2 cut(s) 163, 206
TfiI GAWTC 3 cut(s) 82, 197, 288
TspDTI ATGAA 2 cut(s) 351, 369
VneI GTGCAC 1 cut(s) 97
XceI RCATGY 2 cut(s) 97, 215
XmiI GTMKAC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.