Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011533

Physical Location & Seq

Genomic Coordinates Reverse (-)

3904647 .. 3906111

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGTTTATGAATCAGCGAAGATACTTAAAAATTTAATAAAAATGAAAAAATACATAATTTTGAAACTTCAAAAAACAAAAAAATCATTTTCATATAGTCAGCGCTTGCACGTTCCTTCCTCGTCGCCTCCTTCGAATCTCAAACCATTGACTTTGAGGGTGCAACACAAGAATGTTGCCCCTCCTCTCTTCATTCTATCTTTCTACATGAAAAACAAAACTCAAATCTCGCACCCCAAACATGGCCGGCGACGCCAGACGGATTCGGCGCCAGCAACAACCATAGTCGGTCCTGACTTCGATCATGACATCATTGCTGAGATACTGTCAAGGCTACCGGCCAAATCTCTACTACGATTTCGCTGCGTATGCAAGTCATGGCTTGCATTGATCTCCGATCCCTCTTTTGTTAAAAACCACCTCAGCCGGGTCAACACCAACCACTTCAACCTCCTTCTCGGAACGCGGCCTCTCCAAGCTTCTGTACTGAAGCTAGATGATGGTGACGTTGCAATCACAGAGCTTGATTATCCGGAGATGCATGACTTTGAAGGTGAATGTTTTCCAAATATCTATGGTTCTTGCAATGGCTTGATTTGTATAGAATTTGGAAGCGGTAGCATCATATTATGGAACCCTTGCACTAGAGAGTTCAAGCAGCTACCAGAACCTGAACTTCATATTTGTGAAAGTTCAAGCATCTTTGAGAGTTTCGTATATCTTGCTGGATTCGGTTATGATTCCACCATCGAAGATTACAAGGTAATACGAGCCACTAAAATATATGAAGCAGAAACCACACTTCAAGTCTTTACACTAAAAACGGGTTCATGGAGGCCTAATCCTGATTTCAATCATATTAGCCAAGGCAGTGAATACATTTATCGGTTCGAAAAGCAGGGTTTCTTGTTAAACGAAACTCTACATTGGGTAGCCCTTCTAAGAGGAGTAGAGTATGAGGAAGGTACATTAGGAATACTGTCTTTAGGTCTTGCGGAGGAGAAATTTAAGGTCATGGCGTTATTCCCCTGTCACTCCCCTATATCTGCTTCAATCTTGACTGTTGGGAACTCTTTGTTTGTATACCATGAGTTTGGTATATGGATGATGAAGGAATATGGGGTCGAAGAATCTTGGACCAAAGTCATATACATTTCCCCAGAGTGTTTACCTCAACATTTTGACAATATGCTGACGCCTTTATGCATTTTAGAGAATGGCGAAGTTCTTCTCCGTTGTAGATCCTTGGGATTATATAATCCGGAAGAAAAGACATTTAGAAATATCATTTGTGATTGTGAGGCATATTTTCTTCATTATGTTGCATATGTGGAGACTTTGGTTTCACCAATAACGGGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

454

Amino Acids

51.88

Weight (kDa)

6.57

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	100 - 137	2e-10	F-box domain
F-box-like	PF12937	103 - 138	6.5e-08	F-box-like
FBA_3	PF08268	184 - 429	1.4e-15	F-box associated beta propeller domain
FBA_1	PF07734	191 - 420	2.2e-18	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03940
rosa_chinensis	RchiOBHm_Chr5g0006261 RchiOBHm_Chr5g0006271
rosa_laevigata	RLG00000031369 RLG00000031370 RLG00000031371
rosa_multiflora	Rmu_sc0002867.1_g000005 Rmu_sc0009371.1_g000001 Rmu_sc0037517.1_g000001 Rmu_sc0037517.1_g000002 Rmu_sc0037517.1_g000003
rosa_roxburghii	Rroxscaffold_1G00069740 Rroxscaffold_1G00069760 Rroxscaffold_1G00069770 Rroxscaffold_1G00069780
rosa_rugosa	Rorug04G0419900 Rorug04G0420000
rosa_samantha	Rh5BG047300 Rh5BG047500
rosa_wichuraiana	Rw5G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	1083
AccII	CGCG	1 cut(s)	466
AccIII	TCCGGA	2 cut(s)	532, 1261
AciI	CCGC	3 cut(s)	466, 615, 995
AclWI	GGATC	2 cut(s)	392, 1236
AcoI	YGGCCR	2 cut(s)	244, 339
AcsI	RAATTY	3 cut(s)	31, 605, 1004
AcuI	CTGAAG	1 cut(s)	509
AcyI	GRCGYC	3 cut(s)	253, 269, 1196
AfaI	GTAC	2 cut(s)	486, 967
AfeI	AGCGCT	1 cut(s)	104
AfiI	CCNNNNNNNGG	3 cut(s)	242, 427, 1355
AgsI	TTSAA	9 cut(s)	64, 71, 448, 551, 655, 696, 806, 853, 1053
AluBI	AGCT	4 cut(s)	479, 493, 523, 661
AluI	AGCT	4 cut(s)	479, 493, 523, 661
Alw26I	GTCTC	1 cut(s)	1328
AlwI	GGATC	2 cut(s)	392, 1236
AlwNI	CAGNNNCTG	1 cut(s)	671
Aor13HI	TCCGGA	2 cut(s)	532, 1261
Aor51HI	AGCGCT	1 cut(s)	104
AoxI	GGCC	4 cut(s)	244, 339, 467, 836
ApeKI	GCWGC	2 cut(s)	363, 658
ApoI	RAATTY	3 cut(s)	31, 605, 1004
Asp700I	GAANNNNTTC	2 cut(s)	561, 1227
AspLEI	GCGC	2 cut(s)	105, 271
AspS9I	GGNCC	2 cut(s)	290, 1137
AsuC2I	CCSGG	1 cut(s)	428
AsuHPI	GGTGA	3 cut(s)	515, 566, 1338
AsuII	TTCGAA	2 cut(s)	134, 891
AvaII	GGWCC	2 cut(s)	290, 1137
BanI	GGYRCC	1 cut(s)	268
BbvCI	CCTCAGC	1 cut(s)	422
BbvI	GCAGC	2 cut(s)	350, 670
BccI	CCATC	2 cut(s)	494, 755
BcgI	CGANNNNNNTGC	2 cut(s)	345, 379
BcnI	CCSGG	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	1328
BfaI	CTAG	2 cut(s)	494, 645
BfoI	RGCGCY	2 cut(s)	106, 272
BisI	GCNGC	3 cut(s)	364, 467, 659
BlsI	GCNGC	3 cut(s)	365, 468, 660
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	2 cut(s)	290, 1137
BmgT120I	GGNCC	2 cut(s)	290, 1137
BmiI	GGNNCC	2 cut(s)	270, 635
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	3 cut(s)	528, 630, 708
BoxI	GACNNNNGTC	1 cut(s)	1142
Bpu10I	CCTNAGC	1 cut(s)	422
Bpu14I	TTCGAA	2 cut(s)	134, 891
BpuMI	CCSGG	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	852
BsaHI	GRCGYC	3 cut(s)	253, 269, 1196
BsaJI	CCNNGG	2 cut(s)	865, 1245
BsaWI	WCCGGW	2 cut(s)	532, 1261
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 427, 1355
Bse118I	RCCGGY	2 cut(s)	246, 337
Bse3DI	GCAATG	2 cut(s)	312, 592
Bse8I	GATNNNNATC	1 cut(s)	852
BseAI	TCCGGA	2 cut(s)	532, 1261
BseDI	CCNNGG	2 cut(s)	865, 1245
BseGI	GGATG	1 cut(s)	1110
BseJI	GATNNNNATC	1 cut(s)	852
BseLI	CCNNNNNNNGG	3 cut(s)	242, 427, 1355
BseMI	GCAATG	2 cut(s)	312, 592
BseMII	CTCAG	2 cut(s)	309, 436
BseRI	GAGGAG	3 cut(s)	174, 960, 1013
BseXI	GCAGC	2 cut(s)	350, 670
Bsh1236I	CGCG	1 cut(s)	466
BshFI	GGCC	4 cut(s)	246, 341, 469, 838
BshNI	GGYRCC	1 cut(s)	268
BsiSI	CCGG	5 cut(s)	247, 338, 427, 533, 1262
BslI	CCNNNNNNNGG	3 cut(s)	242, 427, 1355
BsmAI	GTCTC	1 cut(s)	1328
BsnI	GGCC	4 cut(s)	246, 341, 469, 838
Bsp119I	TTCGAA	2 cut(s)	134, 891
Bsp13I	TCCGGA	2 cut(s)	532, 1261
Bsp143I	GATC	4 cut(s)	301, 390, 397, 1241
BspACI	CCGC	3 cut(s)	466, 615, 995
BspANI	GGCC	4 cut(s)	246, 341, 469, 838
BspCNI	CTCAG	2 cut(s)	310, 435
BspEI	TCCGGA	2 cut(s)	532, 1261
BspFNI	CGCG	1 cut(s)	466
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	2 cut(s)	270, 635
BspPI	GGATC	2 cut(s)	392, 1236
BspT104I	TTCGAA	2 cut(s)	134, 891
BspT107I	GGYRCC	1 cut(s)	268
BsrDI	GCAATG	2 cut(s)	312, 592
BsrFI	RCCGGY	2 cut(s)	246, 337
BssAI	RCCGGY	2 cut(s)	246, 337
BssECI	CCNNGG	2 cut(s)	865, 1245
BssMI	GATC	4 cut(s)	301, 390, 397, 1241
BssNAI	GTATAC	1 cut(s)	1084
BssNI	GRCGYC	3 cut(s)	253, 269, 1196
BssT1I	CCWWGG	2 cut(s)	865, 1245
Bst1107I	GTATAC	1 cut(s)	1084
Bst4CI	ACNGT	3 cut(s)	327, 981, 1063
Bst6I	CTCTTC	1 cut(s)	194
BstACI	GRCGYC	3 cut(s)	253, 269, 1196
BstBI	TTCGAA	2 cut(s)	134, 891
BstC8I	GCNNGC	4 cut(s)	107, 248, 273, 384
BstDEI	CTNAG	3 cut(s)	318, 422, 941
BstF5I	GGATG	1 cut(s)	1110
BstFNI	CGCG	1 cut(s)	466
BstH2I	RGCGCY	2 cut(s)	106, 272
BstHHI	GCGC	2 cut(s)	105, 271
BstKTI	GATC	4 cut(s)	304, 393, 400, 1244
BstMAI	GTCTC	1 cut(s)	1328
BstMBI	GATC	4 cut(s)	301, 390, 397, 1241
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 369
BstPAI	GACNNNNGTC	1 cut(s)	1142
BstSCI	CCNGG	1 cut(s)	426
BstUI	CGCG	1 cut(s)	466
BstV1I	GCAGC	2 cut(s)	350, 670
BstX2I	RGATCY	1 cut(s)	1241
BstXI	CCANNNNNNTGG	1 cut(s)	1094
BstYI	RGATCY	1 cut(s)	1241
BstZ17I	GTATAC	1 cut(s)	1084
BsuRI	GGCC	4 cut(s)	246, 341, 469, 838
BtsCI	GGATG	1 cut(s)	1110
BtsI	GCAGTG	1 cut(s)	877
BtsIMutI	CAGTG	1 cut(s)	877
Cac8I	GCNNGC	4 cut(s)	107, 248, 273, 384
CaiI	CAGNNNCTG	1 cut(s)	671
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	2 cut(s)	105, 271
Cfr10I	RCCGGY	2 cut(s)	246, 337
Cfr13I	GGNCC	2 cut(s)	290, 1137
CseI	GACGC	2 cut(s)	261, 1204
Csp6I	GTAC	2 cut(s)	485, 966
CviAII	CATG	8 cut(s)	208, 242, 305, 378, 542, 831, 1015, 1088
CviQI	GTAC	2 cut(s)	485, 966
DdeI	CTNAG	3 cut(s)	318, 422, 941
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	4 cut(s)	303, 392, 399, 1243
DpnII	GATC	4 cut(s)	301, 390, 397, 1241
EaeI	YGGCCR	2 cut(s)	244, 339
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco130I	CCWWGG	2 cut(s)	865, 1245
Eco147I	AGGCCT	1 cut(s)	838
Eco47I	GGWCC	2 cut(s)	290, 1137
Eco47III	AGCGCT	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	509
EcoT14I	CCWWGG	2 cut(s)	865, 1245
EcoT22I	ATGCAT	2 cut(s)	543, 1208
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
ErhI	CCWWGG	2 cut(s)	865, 1245
FaeI	CATG	8 cut(s)	211, 245, 308, 381, 545, 834, 1018, 1091
FatI	CATG	8 cut(s)	207, 241, 304, 377, 541, 830, 1014, 1087
FauNDI	CATATG	1 cut(s)	1327
FblI	GTMKAC	1 cut(s)	1083
Fnu4HI	GCNGC	3 cut(s)	364, 467, 659
FokI	GGATG	1 cut(s)	1117
Fsp4HI	GCNGC	3 cut(s)	364, 467, 659
FspBI	CTAG	2 cut(s)	494, 645
GlaI	GCGC	2 cut(s)	104, 270
GluI	GCNGC	3 cut(s)	364, 467, 659
HaeII	RGCGCY	2 cut(s)	106, 272
HaeIII	GGCC	4 cut(s)	246, 341, 469, 838
HapII	CCGG	5 cut(s)	247, 338, 427, 533, 1262
HgaI	GACGC	2 cut(s)	261, 1204
HhaI	GCGC	2 cut(s)	105, 271
Hin1I	GRCGYC	3 cut(s)	253, 269, 1196
Hin1II	CATG	8 cut(s)	211, 245, 308, 381, 545, 834, 1018, 1091
Hin6I	GCGC	2 cut(s)	103, 269
HinP1I	GCGC	2 cut(s)	103, 269
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	6 cut(s)	11, 136, 263, 729, 740, 1130
HpaII	CCGG	5 cut(s)	247, 338, 427, 533, 1262
HphI	GGTGA	3 cut(s)	515, 566, 1338
Hpy166II	GTNNAC	3 cut(s)	433, 1084, 1169
Hpy188I	TCNGA	2 cut(s)	397, 461
Hpy188III	TCNNGA	6 cut(s)	293, 305, 533, 845, 1057, 1262
Hpy8I	GTNNAC	3 cut(s)	433, 1084, 1169
Hpy99I	CGWCG	2 cut(s)	127, 255
HpyAV	CCTTC	7 cut(s)	126, 141, 464, 545, 947, 956, 1105
HpyCH4III	ACNGT	3 cut(s)	327, 981, 1063
HpyCH4IV	ACGT	2 cut(s)	111, 507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 369
HpyF3I	CTNAG	3 cut(s)	318, 422, 941
HpySE526I	ACGT	2 cut(s)	111, 507
Hsp92I	GRCGYC	3 cut(s)	253, 269, 1196
Hsp92II	CATG	8 cut(s)	211, 245, 308, 381, 545, 834, 1018, 1091
HspAI	GCGC	2 cut(s)	103, 269
KasI	GGCGCC	1 cut(s)	268
Kpn2I	TCCGGA	2 cut(s)	532, 1261
KroI	GCCGGC	1 cut(s)	246
KroNI	GCCGGC	1 cut(s)	248
Kzo9I	GATC	4 cut(s)	301, 390, 397, 1241
Lsp1109I	GCAGC	2 cut(s)	350, 670
LweI	GCATC	3 cut(s)	528, 630, 708
MaeI	CTAG	2 cut(s)	494, 645
MaeII	ACGT	2 cut(s)	111, 507
MaeIII	GTNAC	2 cut(s)	503, 1031
MalI	GATC	4 cut(s)	303, 392, 399, 1243
MboI	GATC	4 cut(s)	301, 390, 397, 1241
MboII	GAAGA	7 cut(s)	31, 181, 764, 1139, 1220, 1277, 1304
MflI	RGATCY	1 cut(s)	1241
MluCI	AATT	4 cut(s)	31, 57, 605, 1004
Mly113I	GGCGCC	1 cut(s)	269
Mph1103I	ATGCAT	2 cut(s)	543, 1208
MroI	TCCGGA	2 cut(s)	532, 1261
MroNI	GCCGGC	1 cut(s)	246
MroXI	GAANNNNTTC	2 cut(s)	561, 1227
MseI	TTAA	5 cut(s)	27, 35, 411, 911, 1008
MslI	CAYNNNNRTG	2 cut(s)	171, 684
MspI	CCGG	5 cut(s)	247, 338, 427, 533, 1262
MspR9I	CCNGG	1 cut(s)	428
MvnI	CGCG	1 cut(s)	466
MwoI	GCNNNNNNNGC	2 cut(s)	252, 369
NaeI	GCCGGC	1 cut(s)	248
NarI	GGCGCC	1 cut(s)	269
NciI	CCSGG	1 cut(s)	428
NdeI	CATATG	1 cut(s)	1327
NdeII	GATC	4 cut(s)	301, 390, 397, 1241
NgoMIV	GCCGGC	1 cut(s)	246
NlaIII	CATG	8 cut(s)	211, 245, 308, 381, 545, 834, 1018, 1091
NlaIV	GGNNCC	2 cut(s)	270, 635
NmuCI	GTSAC	2 cut(s)	503, 1031
NsiI	ATGCAT	2 cut(s)	543, 1208
NspV	TTCGAA	2 cut(s)	134, 891
PagI	TCATGA	1 cut(s)	304
PceI	AGGCCT	1 cut(s)	838
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PdiI	GCCGGC	1 cut(s)	248
PdmI	GAANNNNTTC	2 cut(s)	561, 1227
PfeI	GAWTC	6 cut(s)	11, 136, 263, 729, 740, 1130
PkrI	GCNGC	3 cut(s)	365, 468, 660
PluTI	GGCGCC	1 cut(s)	272
PshAI	GACNNNNGTC	1 cut(s)	1142
PspN4I	GGNNCC	2 cut(s)	270, 635
PspPI	GGNCC	2 cut(s)	290, 1137
PstNI	CAGNNNCTG	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	1241
RsaI	GTAC	2 cut(s)	486, 967
RsaNI	GTAC	2 cut(s)	485, 966
RseI	CAYNNNNRTG	2 cut(s)	171, 684
SaqAI	TTAA	5 cut(s)	27, 35, 411, 911, 1008
SatI	GCNGC	3 cut(s)	364, 467, 659
Sau3AI	GATC	4 cut(s)	301, 390, 397, 1241
Sau96I	GGNCC	2 cut(s)	290, 1137
ScrFI	CCNGG	1 cut(s)	428
SfaNI	GCATC	3 cut(s)	528, 630, 708
SfoI	GGCGCC	1 cut(s)	270
SfuI	TTCGAA	2 cut(s)	134, 891
SinI	GGWCC	2 cut(s)	290, 1137
SmiMI	CAYNNNNRTG	2 cut(s)	171, 684
Sse9I	AATT	4 cut(s)	31, 57, 605, 1004
SseBI	AGGCCT	1 cut(s)	838
SsiI	CCGC	3 cut(s)	466, 615, 995
SspDI	GGCGCC	1 cut(s)	268
SspMI	CTAG	2 cut(s)	494, 645
StuI	AGGCCT	1 cut(s)	838
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	2 cut(s)	865, 1245
TaaI	ACNGT	3 cut(s)	327, 981, 1063
TaiI	ACGT	2 cut(s)	114, 510
TaqI	TCGA	5 cut(s)	134, 300, 750, 891, 1125
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	4 cut(s)	31, 57, 605, 1004
TatI	WGTACW	1 cut(s)	484
TauI	GCSGC	1 cut(s)	469
TfiI	GAWTC	6 cut(s)	11, 136, 263, 729, 740, 1130
Tru1I	TTAA	5 cut(s)	27, 35, 411, 911, 1008
Tru9I	TTAA	5 cut(s)	27, 35, 411, 911, 1008
TscAI	CASTG	1 cut(s)	877
TseFI	GTSAC	2 cut(s)	503, 1031
TseI	GCWGC	2 cut(s)	363, 658
Tsp45I	GTSAC	2 cut(s)	503, 1031
TspGWI	ACGGA	2 cut(s)	275, 1223
TspRI	CASTG	1 cut(s)	877
VpaK11BI	GGWCC	2 cut(s)	290, 1137
XapI	RAATTY	3 cut(s)	31, 605, 1004
XmiI	GTMKAC	1 cut(s)	1083
XmnI	GAANNNNTTC	2 cut(s)	561, 1227
XspI	CTAG	2 cut(s)	494, 645
Zsp2I	ATGCAT	2 cut(s)	543, 1208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.