RchiOBHm_Chr5g0027131

Endoplasmic

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
21091154 .. 21095601
4448 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1584 bp
ATGAATATTTGTACTAATATTGAATGGAGATTGACTCTTAAGTTCTTATCTGCAGGTGAGATGACATATGTGAACCTTCTACTAAACCCTGAACGTTACACTGGCTACGCAGGTCCATCGGCTAGAAGGATATGGGATGCTGTTTACTCTGAAAATTGCCCAAAATATTCAACTCAGGACATTTGCCAGGAGCAAGGAGTATTATACAAACTAATATCTGGTCTTCACTCCTCCATTTCAATTCACATAGCTGCTGATTATCTTCTGGACAAGATCACAAATCTGGAGGATTTGCTGGAATTGGAGATGGTGAAGGAGAAGAATGTGAAGAGATGGGTTTTAGTGGGTGCTGTGGTTGTGGTCTTATTAGCCATAGCTCTCACCTGTACCAGAGATTTTAATTCTAAACTCAACCTTTCTCTGTTTTTCAAGAATCCCAGTTCCTGCCAGTGTCCTCAGGATTCAAAGAAATGCAGTGGCATTGTTGAGGACTGCTGTTGTGATTATGAAACTGTGGACAGTGTTAATGCAGAAGTGTTACATCCTCTGCTACAAGAGATTGTTAAAACTCCCTTTTTTCTATATTTTAAGGCCAAGCTGTGGTGTGACTGTCCCTTCTGGACTGAAGATGGTATGTGCCTCCTGCATGACTGCAGCGTCTGCGAATGCCCAGAAAATGAATTTCCGGAACCTTTCAAGAGGCCCTTTCACCGTGGCCTTCCATCTGATAGTTTGGTTTGTCAAGATGATAAGCTGCAGGGGTCTGTTGACCGCACTCTAGACAGTAGAGCTTTCAGAGGCTGGATTGAGACAGATATCCCTTGTACAAATGATGATGAGACTGATAATGATTCATCTCAGGACATTTGCCAGGAGCAAAGAGTATTGTACAAATTAATATCAGGTCTTCACTCGTCAATTTCAATCCACATAGCTGCTGATTATCTTCTGGACAAGATTACCAATCTGTGGGGTCAAAACATGGAACTGATGCATGATCGCGTTTTAAAATATCCAGATCGTGTTCAGAATTTGTACTTCGCATTCCTCTTTGTTCTCCAGGCAGTGACAAAAGCTGCAGATTACTTAGAGCAGGCTGAGTATGATACAGGTAATCATGAGGAAGACCTGAGAACACAGTCTTTGATGAGGCAGCTACTTTACAATCCTAAACTCCAAGCTGCATGTCCCTTACCGTTTGATGAAGCAAAGCTCTGGAAGGGTCAGAGTGGACCACAATTGAAGCAACAAATTCAAAAGAAATTCAGAAACATCAGTGCATTAATGGATTGTGTGGGATGTGAGAAATGTCGGCTCTGGGGAAAGCTTCAAGTTCTTGGTCTTGGTACTGCATTGAAGATCCTCTTTTCTGTTGATGGTAAAAATCATCAAGATCAACCTCTGCAGCTGCAACGAAATGAAGTGATAGCTCTCGTAAATCTGCTAAATCGACTCTCTGAATCTGTCAAATATGCTTGTCAAAGCGGATATTCAATCAAGAAAGTAGTGGAAGGAGGACGTGTTGCTGAACCTATTTCTATACAAAACAATCAGTACATTACAAAGAATATGGGAGGCGGTTAG

Protein Analysis

527

Amino Acids

59.9

Weight (kDa)

5.45

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERO1 PF04137 18 - 105 3.5e-28 Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
ERO1 PF04137 180 - 248 9.1e-15 Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
ERO1 PF04137 278 - 491 4.9e-80 Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 44
AasI GACNNNNNNGTC 1 cut(s) 656
Acc36I ACCTGC 2 cut(s) 44, 101
AccB7I CCANNNNNTGG 2 cut(s) 600, 969
AccII CGCG 1 cut(s) 1002
AccIII TCCGGA 1 cut(s) 685
AciI CCGC 3 cut(s) 772, 1485, 1578
AclI AACGTT 1 cut(s) 94
AclWI GGATC 1 cut(s) 1354
AcsI RAATTY 4 cut(s) 680, 1030, 1251, 1262
AcuI CTGAAG 1 cut(s) 645
AfaI GTAC 7 cut(s) 13, 388, 826, 890, 1037, 1348, 1556
AfiI CCNNNNNNNGG 2 cut(s) 600, 969
AflII CTTAAG 1 cut(s) 38
AflIII ACRYGT 1 cut(s) 1519
AjiI CACGTC 1 cut(s) 1520
AjnI CCWGG 3 cut(s) 186, 870, 1059
Alw26I GTCTC 2 cut(s) 803, 833
AlwI GGATC 1 cut(s) 1354
AlwNI CAGNNNCTG 3 cut(s) 444, 660, 801
Aor13HI TCCGGA 1 cut(s) 685
AoxI GGCC 3 cut(s) 591, 701, 715
ApeKI GCWGC 9 cut(s) 251, 654, 754, 935, 1076, 1153, 1181, 1405, 1408
ApoI RAATTY 4 cut(s) 680, 1030, 1251, 1262
AseI ATTAAT 2 cut(s) 896, 1283
AspS9I GGNCC 3 cut(s) 113, 702, 1232
AsuHPI GGTGA 4 cut(s) 68, 322, 373, 701
AvaII GGWCC 2 cut(s) 113, 1232
AxyI CCTNAGG 1 cut(s) 456
BbsI GAAGAC 3 cut(s) 215, 899, 1131
BbvI GCAGC 9 cut(s) 238, 666, 741, 922, 1063, 1165, 1168, 1395, 1417
BccI CCATC 6 cut(s) 124, 301, 327, 623, 730, 1370
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 3 cut(s) 188, 872, 1061
BcoDI GTCTC 2 cut(s) 803, 833
BfaI CTAG 2 cut(s) 123, 779
BfmI CTRYAG 5 cut(s) 51, 652, 755, 1077, 1403
BfrI CTTAAG 1 cut(s) 38
BfuAI ACCTGC 2 cut(s) 44, 101
BisI GCNGC 9 cut(s) 252, 655, 755, 936, 1077, 1154, 1182, 1406, 1409
BlsI GCNGC 9 cut(s) 253, 656, 756, 937, 1078, 1155, 1183, 1407, 1410
Bme1390I CCNGG 3 cut(s) 188, 872, 1061
Bme18I GGWCC 2 cut(s) 113, 1232
BmgBI CACGTC 1 cut(s) 1520
BmgT120I GGNCC 3 cut(s) 113, 702, 1232
BmiI GGNNCC 1 cut(s) 690
BmrFI CCNGG 3 cut(s) 188, 872, 1061
BmrI ACTGGG 1 cut(s) 432
BmsI GCATC 2 cut(s) 127, 981
BmuI ACTGGG 1 cut(s) 432
BpiI GAAGAC 3 cut(s) 215, 899, 1131
BplI GAGNNNNNCTC 2 cut(s) 19, 51
BpmI CTGGAG 2 cut(s) 305, 1043
BsaJI CCNNGG 1 cut(s) 712
BsaWI WCCGGW 1 cut(s) 685
BsaXI ACNNNNNCTCC 2 cut(s) 1506, 1536
Bsc4I CCNNNNNNNGG 2 cut(s) 600, 969
Bse1I ACTGG 3 cut(s) 106, 438, 448
Bse21I CCTNAGG 1 cut(s) 456
BseAI TCCGGA 1 cut(s) 685
BseBI CCWGG 3 cut(s) 188, 872, 1061
BseDI CCNNGG 1 cut(s) 712
BseGI GGATG 3 cut(s) 142, 541, 1304
BseLI CCNNNNNNNGG 2 cut(s) 600, 969
BseMII CTCAG 5 cut(s) 188, 470, 872, 1089, 1121
BseNI ACTGG 3 cut(s) 106, 438, 448
BseRI GAGGAG 1 cut(s) 220
BseXI GCAGC 9 cut(s) 238, 666, 741, 922, 1063, 1165, 1168, 1395, 1417
Bsh1236I CGCG 1 cut(s) 1002
BshFI GGCC 3 cut(s) 593, 703, 717
BsiSI CCGG 1 cut(s) 686
BslFI GGGAC 2 cut(s) 597, 1173
BslI CCNNNNNNNGG 2 cut(s) 600, 969
BsmAI GTCTC 2 cut(s) 803, 833
BsmFI GGGAC 2 cut(s) 597, 1173
BsmI GAATGC 2 cut(s) 671, 1043
BsnI GGCC 3 cut(s) 593, 703, 717
Bsp13I TCCGGA 1 cut(s) 685
Bsp1407I TGTACA 2 cut(s) 824, 888
Bsp143I GATC 5 cut(s) 273, 997, 1018, 1359, 1393
BspACI CCGC 3 cut(s) 772, 1485, 1578
BspANI GGCC 3 cut(s) 593, 703, 717
BspCNI CTCAG 5 cut(s) 187, 469, 871, 1090, 1122
BspEI TCCGGA 1 cut(s) 685
BspFNI CGCG 1 cut(s) 1002
BspHI TCATGA 1 cut(s) 1117
BspLI GGNNCC 1 cut(s) 690
BspMAI CTGCAG 5 cut(s) 55, 656, 759, 1081, 1407
BspMI ACCTGC 2 cut(s) 44, 101
BspPI GGATC 1 cut(s) 1354
BspTI CTTAAG 1 cut(s) 38
BsrGI TGTACA 2 cut(s) 824, 888
BsrI ACTGG 3 cut(s) 106, 438, 448
BssECI CCNNGG 1 cut(s) 712
BssMI GATC 5 cut(s) 273, 997, 1018, 1359, 1393
Bst2UI CCWGG 3 cut(s) 188, 872, 1061
Bst4CI ACNGT 7 cut(s) 514, 521, 611, 713, 785, 1140, 1197
Bst6I CTCTTC 1 cut(s) 323
BstAFI CTTAAG 1 cut(s) 38
BstAPI GCANNNNNTGC 1 cut(s) 660
BstAUI TGTACA 2 cut(s) 824, 888
BstC8I GCNNGC 1 cut(s) 1095
BstDEI CTNAG 6 cut(s) 174, 456, 858, 1087, 1098, 1130
BstDSI CCRYGG 1 cut(s) 712
BstF5I GGATG 3 cut(s) 142, 541, 1304
BstFNI CGCG 1 cut(s) 1002
BstKTI GATC 5 cut(s) 276, 1000, 1021, 1362, 1396
BstMAI GTCTC 2 cut(s) 803, 833
BstMBI GATC 5 cut(s) 273, 997, 1018, 1359, 1393
BstMWI GCNNNNNNNGC 1 cut(s) 660
BstNI CCWGG 3 cut(s) 188, 872, 1061
BstNSI RCATGY 1 cut(s) 1188
BstSCI CCNGG 3 cut(s) 186, 870, 1059
BstSFI CTRYAG 5 cut(s) 51, 652, 755, 1077, 1403
BstUI CGCG 1 cut(s) 1002
BstV1I GCAGC 9 cut(s) 238, 666, 741, 922, 1063, 1165, 1168, 1395, 1417
BstV2I GAAGAC 3 cut(s) 215, 899, 1131
BstX2I RGATCY 1 cut(s) 1359
BstYI RGATCY 1 cut(s) 1359
Bsu36I CCTNAGG 1 cut(s) 456
BsuRI GGCC 3 cut(s) 593, 703, 717
BtgI CCRYGG 1 cut(s) 712
BtrI CACGTC 1 cut(s) 1520
BtsCI GGATG 3 cut(s) 142, 541, 1304
BtsI GCAGTG 2 cut(s) 481, 1071
BtsIMutI CAGTG 6 cut(s) 99, 455, 481, 526, 1071, 1282
BveI ACCTGC 2 cut(s) 44, 101
Cac8I GCNNGC 1 cut(s) 1095
CaiI CAGNNNCTG 3 cut(s) 444, 660, 801
CciI TCATGA 1 cut(s) 1117
Cfr13I GGNCC 3 cut(s) 113, 702, 1232
CseI GACGC 1 cut(s) 646
Csp6I GTAC 7 cut(s) 12, 387, 825, 889, 1036, 1347, 1555
CviAII CATG 5 cut(s) 647, 982, 995, 1118, 1185
CviQI GTAC 7 cut(s) 12, 387, 825, 889, 1036, 1347, 1555
DdeI CTNAG 6 cut(s) 174, 456, 858, 1087, 1098, 1130
DpnI GATC 5 cut(s) 275, 999, 1020, 1361, 1395
DpnII GATC 5 cut(s) 273, 997, 1018, 1359, 1393
DraI TTTAAA 1 cut(s) 1008
DrdI GACNNNNNNGTC 1 cut(s) 656
DseDI GACNNNNNNGTC 1 cut(s) 656
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
Eco32I GATATC 1 cut(s) 817
Eco47I GGWCC 2 cut(s) 113, 1232
Eco57I CTGAAG 1 cut(s) 645
Eco81I CCTNAGG 1 cut(s) 456
EcoO109I RGGNCCY 1 cut(s) 702
EcoRII CCWGG 3 cut(s) 186, 870, 1059
EcoRV GATATC 1 cut(s) 817
EcoT22I ATGCAT 1 cut(s) 996
FaeI CATG 5 cut(s) 650, 985, 998, 1121, 1188
FalI AAGNNNNNCTT 4 cut(s) 689, 721, 1349, 1381
FaqI GGGAC 2 cut(s) 597, 1173
FatI CATG 5 cut(s) 646, 981, 994, 1117, 1184
FauNDI CATATG 1 cut(s) 67
Fnu4HI GCNGC 9 cut(s) 252, 655, 755, 936, 1077, 1154, 1182, 1406, 1409
FokI GGATG 3 cut(s) 149, 528, 1311
Fsp4HI GCNGC 9 cut(s) 252, 655, 755, 936, 1077, 1154, 1182, 1406, 1409
FspBI CTAG 2 cut(s) 123, 779
GluI GCNGC 9 cut(s) 252, 655, 755, 936, 1077, 1154, 1182, 1406, 1409
GsuI CTGGAG 2 cut(s) 305, 1043
HaeIII GGCC 3 cut(s) 593, 703, 717
HapII CCGG 1 cut(s) 686
HgaI GACGC 1 cut(s) 646
Hin1II CATG 5 cut(s) 650, 985, 998, 1121, 1188
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HindIII AAGCTT 1 cut(s) 1325
HinfI GANTC 6 cut(s) 34, 433, 461, 851, 1452, 1460
HpaII CCGG 1 cut(s) 686
HphI GGTGA 4 cut(s) 68, 322, 373, 701
Hpy166II GTNNAC 5 cut(s) 73, 145, 517, 769, 1232
Hpy188I TCNGA 7 cut(s) 151, 727, 797, 1029, 1227, 1268, 1459
Hpy8I GTNNAC 5 cut(s) 73, 145, 517, 769, 1232
HpyAV CCTTC 7 cut(s) 86, 120, 307, 625, 728, 1213, 1505
HpyCH4III ACNGT 7 cut(s) 514, 521, 611, 713, 785, 1140, 1197
HpyCH4IV ACGT 2 cut(s) 94, 1519
HpyF10VI GCNNNNNNNGC 1 cut(s) 660
HpyF3I CTNAG 6 cut(s) 174, 456, 858, 1087, 1098, 1130
HpySE526I ACGT 2 cut(s) 94, 1519
Hsp92II CATG 5 cut(s) 650, 985, 998, 1121, 1188
Kpn2I TCCGGA 1 cut(s) 685
Kzo9I GATC 5 cut(s) 273, 997, 1018, 1359, 1393
LmnI GCTCC 2 cut(s) 190, 874
Lsp1109I GCAGC 9 cut(s) 238, 666, 741, 922, 1063, 1165, 1168, 1395, 1417
LweI GCATC 2 cut(s) 127, 981
MaeI CTAG 2 cut(s) 123, 779
MaeII ACGT 2 cut(s) 94, 1519
MaeIII GTNAC 4 cut(s) 95, 537, 605, 1066
MalI GATC 5 cut(s) 275, 999, 1020, 1361, 1395
MboI GATC 5 cut(s) 273, 997, 1018, 1359, 1393
MboII GAAGA 9 cut(s) 215, 254, 331, 340, 638, 899, 938, 1136, 1369
MfeI CAATTG 1 cut(s) 1238
MflI RGATCY 1 cut(s) 1359
MlyI GAGTC 2 cut(s) 28, 1446
Mph1103I ATGCAT 1 cut(s) 996
MroI TCCGGA 1 cut(s) 685
MseI TTAA 8 cut(s) 39, 399, 525, 564, 588, 896, 1007, 1283
MspA1I CMGCKG 1 cut(s) 1408
MspCI CTTAAG 1 cut(s) 38
MspI CCGG 1 cut(s) 686
MspR9I CCNGG 3 cut(s) 188, 872, 1061
MunI CAATTG 1 cut(s) 1238
Mva1269I GAATGC 2 cut(s) 671, 1043
MvaI CCWGG 3 cut(s) 188, 872, 1061
MvnI CGCG 1 cut(s) 1002
MwoI GCNNNNNNNGC 1 cut(s) 660
NdeI CATATG 1 cut(s) 67
NdeII GATC 5 cut(s) 273, 997, 1018, 1359, 1393
NlaIII CATG 5 cut(s) 650, 985, 998, 1121, 1188
NlaIV GGNNCC 1 cut(s) 690
NmuCI GTSAC 2 cut(s) 605, 1066
NsiI ATGCAT 1 cut(s) 996
NspI RCATGY 1 cut(s) 1188
PagI TCATGA 1 cut(s) 1117
PaqCI CACCTGC 1 cut(s) 44
PctI GAATGC 2 cut(s) 671, 1043
PfeI GAWTC 4 cut(s) 433, 461, 851, 1460
PflMI CCANNNNNTGG 2 cut(s) 600, 969
PkrI GCNGC 9 cut(s) 253, 656, 756, 937, 1078, 1155, 1183, 1407, 1410
PleI GAGTC 2 cut(s) 28, 1446
PpsI GAGTC 2 cut(s) 28, 1446
PshBI ATTAAT 2 cut(s) 896, 1283
Psp1406I AACGTT 1 cut(s) 94
Psp6I CCWGG 3 cut(s) 186, 870, 1059
PspGI CCWGG 3 cut(s) 186, 870, 1059
PspN4I GGNNCC 1 cut(s) 690
PspPI GGNCC 3 cut(s) 113, 702, 1232
PstI CTGCAG 5 cut(s) 55, 656, 759, 1081, 1407
PstNI CAGNNNCTG 3 cut(s) 444, 660, 801
PsuI RGATCY 1 cut(s) 1359
PvuII CAGCTG 1 cut(s) 1408
RsaI GTAC 7 cut(s) 13, 388, 826, 890, 1037, 1348, 1556
RsaNI GTAC 7 cut(s) 12, 387, 825, 889, 1036, 1347, 1555
SaqAI TTAA 8 cut(s) 39, 399, 525, 564, 588, 896, 1007, 1283
SatI GCNGC 9 cut(s) 252, 655, 755, 936, 1077, 1154, 1182, 1406, 1409
Sau3AI GATC 5 cut(s) 273, 997, 1018, 1359, 1393
Sau96I GGNCC 3 cut(s) 113, 702, 1232
SchI GAGTC 2 cut(s) 28, 1446
ScrFI CCNGG 3 cut(s) 188, 872, 1061
SfaNI GCATC 2 cut(s) 127, 981
SfcI CTRYAG 5 cut(s) 51, 652, 755, 1077, 1403
SinI GGWCC 2 cut(s) 113, 1232
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SsiI CCGC 3 cut(s) 772, 1485, 1578
SspI AATATT 3 cut(s) 7, 19, 167
SspMI CTAG 2 cut(s) 123, 779
StyD4I CCNGG 3 cut(s) 186, 870, 1059
TaaI ACNGT 7 cut(s) 514, 521, 611, 713, 785, 1140, 1197
TaiI ACGT 2 cut(s) 97, 1522
TaqI TCGA 1 cut(s) 1450
TatI WGTACW 5 cut(s) 11, 824, 888, 1035, 1554
TfiI GAWTC 4 cut(s) 433, 461, 851, 1460
Tru1I TTAA 8 cut(s) 39, 399, 525, 564, 588, 896, 1007, 1283
Tru9I TTAA 8 cut(s) 39, 399, 525, 564, 588, 896, 1007, 1283
TscAI CASTG 6 cut(s) 106, 455, 481, 526, 1071, 1282
TseFI GTSAC 2 cut(s) 605, 1066
TseI GCWGC 9 cut(s) 251, 654, 754, 935, 1076, 1153, 1181, 1405, 1408
Tsp45I GTSAC 2 cut(s) 605, 1066
TspDTI ATGAA 6 cut(s) 17, 522, 693, 843, 1218, 1434
TspRI CASTG 6 cut(s) 106, 455, 481, 526, 1071, 1282
Van91I CCANNNNNTGG 2 cut(s) 600, 969
Vha464I CTTAAG 1 cut(s) 38
VpaK11BI GGWCC 2 cut(s) 113, 1232
VspI ATTAAT 2 cut(s) 896, 1283
XapI RAATTY 4 cut(s) 680, 1030, 1251, 1262
XbaI TCTAGA 1 cut(s) 778
XceI RCATGY 1 cut(s) 1188
XspI CTAG 2 cut(s) 123, 779
Zsp2I ATGCAT 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.