Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009858

Physical Location & Seq

Genomic Coordinates Reverse (-)

21129101 .. 21132970

Gene Structure 3870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGTGAAGGAGAAGAATGTGAAGAGATGGGTTTTAGTGGGTGCTGTGGTTGTGGTCTTATTAGCCATAGCTCTCACCTCTACCAGAGATTTTAATTCTAAACTCAACCTTTCTCTGTTTTTCAAGAATCCCAGTTCCTGCCAATGTCCTCAGGATTCAAAGAAATACAGTGGCATTGATGAGGACTGCTGTTGTGATTATGAAACGGTGGACAGTGTTAATGCAGAGGTGTTGCATCCTCTGCTACAAGAGATTGTTAAAACTCCGTTTTTTCGATATTTTAAGGCCAAGCTGTGGTGTGACTGTCCCTTCTGGACTGAAGATGGTATGTGCCTCCTGCGTGACTGCAGCGTCTGCGAATGCCCAGAAAATGAATTTCCGGAACCTTTCAAGAGGCCCTTTCACGGTGGCCTTCCATCCGACACTTTGGTATGTCAAGATGATAAGCTGCAGGGGTCTGTTGACCGCACTCTAGACGGTAGAGCATTCAGAGGCTGGATTGAGACAGATAATCCTTGGACAAATGATGACGAGACTGATAATGATGAGATGACATATGTGAACCTTCTACTGAACCCTGAACGTTACACTGGCTATACTGGTCCATCAGCAAGAAGGATATGGGATGCTGTTTATTCTGAAAATTGCCCAAAATATTCATCTCAGGACATTTGCCAGGAGCAAAGAGTATTGTACAAATTAATATCGGGTCTTCACTCGTCAATTTCAATCCACATAGCTGCTGATTATCTTCTAGACAAGATTACCAATCTGTGGGGTCAAAACATGGAATTGATGCATGATCGCGTTCTAAAATATCCAGATCGTGTTCAGAATTTGTACTTCGCATTCCTCTTTGTTCTCCGGGCAGTGACAAAAGCTGCAGATTACTTGGAGCAGGCTGAGTATGATACAGGTAATCATGAGGAAGACCTGAGAACAGAGTCTTTGATGAGGCAGCTACTTTACAATCCTAAACTCCAAGCTGCATGTCCCCTACCGTTTGATGAAGCAAAGCTCTGGAAAGGTCGGAGCGGACCACAATTGAAGCAACAAATTCAAAAGAAATTCAGAAACATTAGTGCATTAATGGATTGTGTGGGATGTGAGAAATGTCGGCTCTGGGGAAAGCTTCAAGTTCTCGGTATTGGTACTGCATTGAAGATCCTCTTTTCTGTTGATGGTAAAAATCATCAAGATCAACCTCTGCAGCTGCAACGAAATGAAGTTATAGCTCTCGTAAATCTGCTAAATCGACTCTCTGAATCCGTCAAATATGCTTGTCAAAGCGGACATTCAATCAAGAAAGTAGCGGAAGGAGGACGAGTTGTTGAACCTTATTCTATACAAACAATCAGTACATTGCAAAGAATATGGGAGGCGGTGATCCCAATCAGGCTTAGGTTAGGGATGTTAGCACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

474

Amino Acids

54.25

Weight (kDa)

5.99

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERO1	PF04137	78 - 426	6.1e-122	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72280
prunus_persica	Prupe.4G145500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0027131 RchiOBHm_Chr5g0027151 RchiOBHm_Chr5g0027161 RchiOBHm_Chr5g0027251
rosa_laevigata	RLG00000032999 RLG00000033001
rosa_multiflora	Rmu_sc0000882.1_g000035 Rmu_sc0006065.1_g000015
rosa_rugosa	Rorug05G0097800 Rorug05G0124600
rosa_samantha	Rh5AG191300 Rh5AG191800 Rh5BG189000 Rh5BG189500 Rh5CG210100 Rh5DG190800 Rh5DG191600
rosa_wichuraiana	Rw5G017440 Rw5G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AccB7I	CCANNNNNTGG	2 cut(s)	294, 774
AccBSI	CCGCTC	1 cut(s)	1035
AccII	CGCG	1 cut(s)	807
AccIII	TCCGGA	1 cut(s)	379
AciI	CCGC	5 cut(s)	466, 1035, 1290, 1313, 1382
AclI	AACGTT	1 cut(s)	583
AclWI	GGATC	2 cut(s)	1159, 1381
AcsI	RAATTY	4 cut(s)	374, 835, 1056, 1067
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	4 cut(s)	695, 842, 1153, 1360
AfiI	CCNNNNNNNGG	3 cut(s)	294, 404, 774
AjnI	CCWGG	1 cut(s)	675
Alw26I	GTCTC	2 cut(s)	497, 527
AlwI	GGATC	2 cut(s)	1159, 1381
AlwNI	CAGNNNCTG	3 cut(s)	138, 354, 495
Aor13HI	TCCGGA	1 cut(s)	379
AoxI	GGCC	3 cut(s)	285, 395, 409
ApeKI	GCWGC	8 cut(s)	348, 448, 740, 881, 958, 986, 1210, 1213
ApoI	RAATTY	4 cut(s)	374, 835, 1056, 1067
AseI	ATTAAT	2 cut(s)	701, 1088
AspS9I	GGNCC	3 cut(s)	396, 602, 1037
AsuC2I	CCSGG	1 cut(s)	866
AsuHPI	GGTGA	3 cut(s)	16, 67, 1396
AvaII	GGWCC	2 cut(s)	602, 1037
AxyI	CCTNAGG	1 cut(s)	150
BbsI	GAAGAC	2 cut(s)	704, 936
BbvI	GCAGC	8 cut(s)	360, 435, 727, 868, 970, 973, 1200, 1222
BccI	CCATC	5 cut(s)	21, 317, 424, 613, 1175
BciT130I	CCWGG	1 cut(s)	677
BcnI	CCSGG	1 cut(s)	866
BcoDI	GTCTC	2 cut(s)	497, 527
BfaI	CTAG	2 cut(s)	473, 755
BfmI	CTRYAG	4 cut(s)	346, 449, 882, 1208
BisI	GCNGC	8 cut(s)	349, 449, 741, 882, 959, 987, 1211, 1214
BlsI	GCNGC	8 cut(s)	350, 450, 742, 883, 960, 988, 1212, 1215
Bme1390I	CCNGG	2 cut(s)	677, 866
Bme18I	GGWCC	2 cut(s)	602, 1037
BmgT120I	GGNCC	3 cut(s)	396, 602, 1037
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	2 cut(s)	677, 866
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	3 cut(s)	244, 616, 786
BmuI	ACTGGG	1 cut(s)	126
BpiI	GAAGAC	2 cut(s)	704, 936
Bpu10I	CCTNAGC	1 cut(s)	1400
BpuMI	CCSGG	1 cut(s)	866
BsaBI	GATNNNNATC	1 cut(s)	1391
BsaJI	CCNNGG	1 cut(s)	515
BsaWI	WCCGGW	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	1311, 1341
Bsc4I	CCNNNNNNNGG	3 cut(s)	294, 404, 774
Bse1I	ACTGG	3 cut(s)	132, 595, 604
Bse21I	CCTNAGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	1361
Bse8I	GATNNNNATC	1 cut(s)	1391
BseAI	TCCGGA	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	677
BseDI	CCNNGG	1 cut(s)	515
BseGI	GGATG	5 cut(s)	235, 416, 631, 1109, 1416
BseJI	GATNNNNATC	1 cut(s)	1391
BseLI	CCNNNNNNNGG	3 cut(s)	294, 404, 774
BseMI	GCAATG	1 cut(s)	1361
BseMII	CTCAG	4 cut(s)	164, 677, 894, 926
BseNI	ACTGG	3 cut(s)	132, 595, 604
BseXI	GCAGC	8 cut(s)	360, 435, 727, 868, 970, 973, 1200, 1222
Bsh1236I	CGCG	1 cut(s)	807
BshFI	GGCC	3 cut(s)	287, 397, 411
BsiSI	CCGG	2 cut(s)	380, 865
BslFI	GGGAC	2 cut(s)	291, 978
BslI	CCNNNNNNNGG	3 cut(s)	294, 404, 774
BsmAI	GTCTC	2 cut(s)	497, 527
BsmFI	GGGAC	2 cut(s)	291, 978
BsmI	GAATGC	3 cut(s)	365, 485, 848
BsnI	GGCC	3 cut(s)	287, 397, 411
Bsp13I	TCCGGA	1 cut(s)	379
Bsp1407I	TGTACA	1 cut(s)	693
Bsp143I	GATC	5 cut(s)	802, 823, 1164, 1198, 1386
BspACI	CCGC	5 cut(s)	466, 1035, 1290, 1313, 1382
BspANI	GGCC	3 cut(s)	287, 397, 411
BspCNI	CTCAG	4 cut(s)	163, 676, 895, 927
BspEI	TCCGGA	1 cut(s)	379
BspFNI	CGCG	1 cut(s)	807
BspHI	TCATGA	1 cut(s)	922
BspLI	GGNNCC	1 cut(s)	384
BspMAI	CTGCAG	4 cut(s)	350, 453, 886, 1212
BspPI	GGATC	2 cut(s)	1159, 1381
BsrBI	CCGCTC	1 cut(s)	1035
BsrDI	GCAATG	1 cut(s)	1361
BsrGI	TGTACA	1 cut(s)	693
BsrI	ACTGG	3 cut(s)	132, 595, 604
BssECI	CCNNGG	1 cut(s)	515
BssMI	GATC	5 cut(s)	802, 823, 1164, 1198, 1386
BssT1I	CCWWGG	1 cut(s)	515
Bst2UI	CCWGG	1 cut(s)	677
Bst4CI	ACNGT	8 cut(s)	170, 208, 215, 305, 407, 479, 1002, 1422
Bst6I	CTCTTC	1 cut(s)	17
BstAPI	GCANNNNNTGC	2 cut(s)	241, 354
BstAUI	TGTACA	1 cut(s)	693
BstC8I	GCNNGC	1 cut(s)	900
BstDEI	CTNAG	5 cut(s)	150, 663, 903, 935, 1400
BstF5I	GGATG	5 cut(s)	235, 416, 631, 1109, 1416
BstFNI	CGCG	1 cut(s)	807
BstKTI	GATC	5 cut(s)	805, 826, 1167, 1201, 1389
BstMAI	GTCTC	2 cut(s)	497, 527
BstMBI	GATC	5 cut(s)	802, 823, 1164, 1198, 1386
BstMWI	GCNNNNNNNGC	2 cut(s)	241, 354
BstNI	CCWGG	1 cut(s)	677
BstNSI	RCATGY	1 cut(s)	993
BstSCI	CCNGG	2 cut(s)	675, 864
BstSFI	CTRYAG	4 cut(s)	346, 449, 882, 1208
BstUI	CGCG	1 cut(s)	807
BstV1I	GCAGC	8 cut(s)	360, 435, 727, 868, 970, 973, 1200, 1222
BstV2I	GAAGAC	2 cut(s)	704, 936
BstX2I	RGATCY	1 cut(s)	1164
BstYI	RGATCY	1 cut(s)	1164
Bsu36I	CCTNAGG	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	287, 397, 411
BtsCI	GGATG	5 cut(s)	235, 416, 631, 1109, 1416
BtsI	GCAGTG	1 cut(s)	876
BtsIMutI	CAGTG	5 cut(s)	175, 220, 588, 876, 1418
Cac8I	GCNNGC	1 cut(s)	900
CaiI	CAGNNNCTG	3 cut(s)	138, 354, 495
CciI	TCATGA	1 cut(s)	922
Cfr13I	GGNCC	3 cut(s)	396, 602, 1037
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	4 cut(s)	694, 841, 1152, 1359
CviAII	CATG	4 cut(s)	787, 800, 923, 990
CviQI	GTAC	4 cut(s)	694, 841, 1152, 1359
DdeI	CTNAG	5 cut(s)	150, 663, 903, 935, 1400
DpnI	GATC	5 cut(s)	804, 825, 1166, 1200, 1388
DpnII	GATC	5 cut(s)	802, 823, 1164, 1198, 1386
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	515
Eco47I	GGWCC	2 cut(s)	602, 1037
Eco57I	CTGAAG	1 cut(s)	339
Eco81I	CCTNAGG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	675
EcoT14I	CCWWGG	1 cut(s)	515
EcoT22I	ATGCAT	1 cut(s)	801
ErhI	CCWWGG	1 cut(s)	515
FaeI	CATG	4 cut(s)	790, 803, 926, 993
FalI	AAGNNNNNCTT	4 cut(s)	383, 415, 1154, 1186
FaqI	GGGAC	2 cut(s)	291, 978
FatI	CATG	4 cut(s)	786, 799, 922, 989
FauNDI	CATATG	1 cut(s)	556
Fnu4HI	GCNGC	8 cut(s)	349, 449, 741, 882, 959, 987, 1211, 1214
FokI	GGATG	4 cut(s)	222, 403, 638, 1116
Fsp4HI	GCNGC	8 cut(s)	349, 449, 741, 882, 959, 987, 1211, 1214
FspBI	CTAG	2 cut(s)	473, 755
GluI	GCNGC	8 cut(s)	349, 449, 741, 882, 959, 987, 1211, 1214
HaeIII	GGCC	3 cut(s)	287, 397, 411
HapII	CCGG	2 cut(s)	380, 865
HgaI	GACGC	1 cut(s)	340
Hin1II	CATG	4 cut(s)	790, 803, 926, 993
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	1130
HinfI	GANTC	5 cut(s)	127, 155, 944, 1257, 1265
HpaII	CCGG	2 cut(s)	380, 865
HphI	GGTGA	3 cut(s)	16, 67, 1396
Hpy166II	GTNNAC	3 cut(s)	211, 463, 562
Hpy188I	TCNGA	7 cut(s)	421, 491, 640, 834, 1032, 1073, 1264
Hpy8I	GTNNAC	3 cut(s)	211, 463, 562
HpyAV	CCTTC	5 cut(s)	319, 422, 575, 609, 1310
HpyCH4III	ACNGT	8 cut(s)	170, 208, 215, 305, 407, 479, 1002, 1422
HpyCH4IV	ACGT	1 cut(s)	583
HpyF10VI	GCNNNNNNNGC	2 cut(s)	241, 354
HpyF3I	CTNAG	5 cut(s)	150, 663, 903, 935, 1400
HpySE526I	ACGT	1 cut(s)	583
Hsp92II	CATG	4 cut(s)	790, 803, 926, 993
Kpn2I	TCCGGA	1 cut(s)	379
Kzo9I	GATC	5 cut(s)	802, 823, 1164, 1198, 1386
LmnI	GCTCC	3 cut(s)	679, 895, 1032
Lsp1109I	GCAGC	8 cut(s)	360, 435, 727, 868, 970, 973, 1200, 1222
LweI	GCATC	3 cut(s)	244, 616, 786
MaeI	CTAG	2 cut(s)	473, 755
MaeII	ACGT	1 cut(s)	583
MaeIII	GTNAC	4 cut(s)	299, 341, 584, 871
MalI	GATC	5 cut(s)	804, 825, 1166, 1200, 1388
MbiI	CCGCTC	1 cut(s)	1035
MboI	GATC	5 cut(s)	802, 823, 1164, 1198, 1386
MboII	GAAGA	7 cut(s)	25, 34, 332, 704, 743, 941, 1174
MfeI	CAATTG	1 cut(s)	1043
MflI	RGATCY	1 cut(s)	1164
MlyI	GAGTC	2 cut(s)	953, 1251
MmeI	TCCRAC	2 cut(s)	444, 1010
Mph1103I	ATGCAT	1 cut(s)	801
MroI	TCCGGA	1 cut(s)	379
MseI	TTAA	6 cut(s)	93, 219, 258, 282, 701, 1088
MspA1I	CMGCKG	1 cut(s)	1213
MspI	CCGG	2 cut(s)	380, 865
MspR9I	CCNGG	2 cut(s)	677, 866
MunI	CAATTG	1 cut(s)	1043
Mva1269I	GAATGC	3 cut(s)	365, 485, 848
MvaI	CCWGG	1 cut(s)	677
MvnI	CGCG	1 cut(s)	807
MwoI	GCNNNNNNNGC	2 cut(s)	241, 354
NciI	CCSGG	1 cut(s)	866
NdeI	CATATG	1 cut(s)	556
NdeII	GATC	5 cut(s)	802, 823, 1164, 1198, 1386
NlaIII	CATG	4 cut(s)	790, 803, 926, 993
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	3 cut(s)	299, 341, 871
NsiI	ATGCAT	1 cut(s)	801
NspI	RCATGY	1 cut(s)	993
PagI	TCATGA	1 cut(s)	922
PctI	GAATGC	3 cut(s)	365, 485, 848
PfeI	GAWTC	3 cut(s)	127, 155, 1265
PflMI	CCANNNNNTGG	2 cut(s)	294, 774
PkrI	GCNGC	8 cut(s)	350, 450, 742, 883, 960, 988, 1212, 1215
PleI	GAGTC	2 cut(s)	952, 1251
PpsI	GAGTC	2 cut(s)	952, 1251
PshBI	ATTAAT	2 cut(s)	701, 1088
Psp1406I	AACGTT	1 cut(s)	583
Psp6I	CCWGG	1 cut(s)	675
PspGI	CCWGG	1 cut(s)	675
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	3 cut(s)	396, 602, 1037
PstI	CTGCAG	4 cut(s)	350, 453, 886, 1212
PstNI	CAGNNNCTG	3 cut(s)	138, 354, 495
PsuI	RGATCY	1 cut(s)	1164
PvuII	CAGCTG	1 cut(s)	1213
RsaI	GTAC	4 cut(s)	695, 842, 1153, 1360
RsaNI	GTAC	4 cut(s)	694, 841, 1152, 1359
SaqAI	TTAA	6 cut(s)	93, 219, 258, 282, 701, 1088
SatI	GCNGC	8 cut(s)	349, 449, 741, 882, 959, 987, 1211, 1214
Sau3AI	GATC	5 cut(s)	802, 823, 1164, 1198, 1386
Sau96I	GGNCC	3 cut(s)	396, 602, 1037
SchI	GAGTC	2 cut(s)	953, 1251
ScrFI	CCNGG	2 cut(s)	677, 866
SfaNI	GCATC	3 cut(s)	244, 616, 786
SfcI	CTRYAG	4 cut(s)	346, 449, 882, 1208
SinI	GGWCC	2 cut(s)	602, 1037
SsiI	CCGC	5 cut(s)	466, 1035, 1290, 1313, 1382
SspI	AATATT	1 cut(s)	656
SspMI	CTAG	2 cut(s)	473, 755
StyD4I	CCNGG	2 cut(s)	675, 864
StyI	CCWWGG	1 cut(s)	515
TaaI	ACNGT	8 cut(s)	170, 208, 215, 305, 407, 479, 1002, 1422
TaiI	ACGT	1 cut(s)	586
TaqI	TCGA	2 cut(s)	274, 1255
TatI	WGTACW	3 cut(s)	693, 840, 1358
TfiI	GAWTC	3 cut(s)	127, 155, 1265
Tru1I	TTAA	6 cut(s)	93, 219, 258, 282, 701, 1088
Tru9I	TTAA	6 cut(s)	93, 219, 258, 282, 701, 1088
TscAI	CASTG	5 cut(s)	175, 220, 595, 876, 1425
TseFI	GTSAC	3 cut(s)	299, 341, 871
TseI	GCWGC	8 cut(s)	348, 448, 740, 881, 958, 986, 1210, 1213
Tsp45I	GTSAC	3 cut(s)	299, 341, 871
TspDTI	ATGAA	5 cut(s)	216, 387, 648, 1023, 1239
TspGWI	ACGGA	2 cut(s)	255, 1258
TspRI	CASTG	5 cut(s)	175, 220, 595, 876, 1425
Van91I	CCANNNNNTGG	2 cut(s)	294, 774
VpaK11BI	GGWCC	2 cut(s)	602, 1037
VspI	ATTAAT	2 cut(s)	701, 1088
XapI	RAATTY	4 cut(s)	374, 835, 1056, 1067
XbaI	TCTAGA	2 cut(s)	472, 754
XceI	RCATGY	1 cut(s)	993
XspI	CTAG	2 cut(s)	473, 755
Zsp2I	ATGCAT	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.