RchiOBHm_Chr4g0392041

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005170
Physical Location & Seq
Forward (+)
7478874 .. 7479634
761 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 300 bp
ATGACTCACACTAACACCTTAGTGGTTAACCTTGGAGATCTTATACAGCTTCTATCAAATGACAGATTCAAGAGTGTAGAGCACAGGGTACTGGCAAACCGTAAAGGTCCAAGAATATCAGTTGCAAGCTTTTTCAGCACAGGAATGCTGCCATTGACCAAGCTCTATGGACCCATCAAGGAGTTATTATCAGAAGATAATCCTCCAAAGTACAGGGAGACAACTGTGAGGGACTTTAATGTCTACTACAAAGAAAAAGGCCTTGATGGGAAGTCTGCCTTGTCTCATTTTAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

99

Amino Acids

11.27

Weight (kDa)

9.64

Isoelectric Point (pI)

-1.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 5 - 46 1e-11 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccI GTMKAC 1 cut(s) 243
AfaI GTAC 2 cut(s) 90, 212
AgsI TTSAA 1 cut(s) 70
AleI CACNNNNGTG 1 cut(s) 20
AluBI AGCT 4 cut(s) 49, 129, 163, 295
AluI AGCT 4 cut(s) 49, 129, 163, 295
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 2 cut(s) 212, 288
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 148
AspS9I GGNCC 2 cut(s) 107, 170
AvaII GGWCC 2 cut(s) 107, 170
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 135
BccI CCATC 2 cut(s) 182, 260
BcoDI GTCTC 2 cut(s) 212, 288
BglII AGATCT 1 cut(s) 37
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme18I GGWCC 2 cut(s) 107, 170
BmgT120I GGNCC 2 cut(s) 107, 170
BmiI GGNNCC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 135
BshFI GGCC 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 84
BslFI GGGAC 1 cut(s) 245
BsmAI GTCTC 2 cut(s) 212, 288
BsmFI GGGAC 1 cut(s) 245
BsmI GAATGC 1 cut(s) 150
BsnI GGCC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 37
BspANI GGCC 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 172
BsrI ACTGG 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 31
Bst4CI ACNGT 2 cut(s) 101, 226
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 19
BstKTI GATC 1 cut(s) 40
BstMAI GTCTC 2 cut(s) 212, 288
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuRI GGCC 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 107, 170
Csp6I GTAC 2 cut(s) 89, 211
CviJI RGCY 5 cut(s) 49, 129, 163, 261, 295
CviKI_1 RGCY 5 cut(s) 49, 129, 163, 261, 295
CviQI GTAC 2 cut(s) 89, 211
DdeI CTNAG 1 cut(s) 19
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 31
Eco147I AGGCCT 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 107, 170
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaiI YATR 2 cut(s) 44, 168
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 245
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 149
HaeIII GGCC 1 cut(s) 261
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HindIII AAGCTT 2 cut(s) 127, 293
HinfI GANTC 2 cut(s) 4, 66
HpaI GTTAAC 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 28, 244
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 2 cut(s) 28, 244
HpyCH4III ACNGT 2 cut(s) 101, 226
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 1 cut(s) 19
KspAI GTTAAC 1 cut(s) 28
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 4 cut(s) 70, 77, 126, 199
Lsp1109I GCAGC 1 cut(s) 135
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 1 cut(s) 206
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 84
MnlI CCTC 2 cut(s) 213, 222
MseI TTAA 3 cut(s) 27, 237, 291
MslI CAYNNNNRTG 2 cut(s) 20, 143
Mva1269I GAATGC 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 135
NdeII GATC 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 172
OliI CACNNNNGTG 1 cut(s) 20
PceI AGGCCT 1 cut(s) 261
PctI GAATGC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 66
PkrI GCNGC 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 172
PspPI GGNCC 2 cut(s) 107, 170
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 2 cut(s) 90, 212
RsaNI GTAC 2 cut(s) 89, 211
RseI CAYNNNNRTG 2 cut(s) 20, 143
SaqAI TTAA 3 cut(s) 27, 237, 291
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 2 cut(s) 107, 170
SduI GDGCHC 1 cut(s) 84
SetI ASST 7 cut(s) 20, 33, 51, 109, 131, 165, 297
SinI GGWCC 2 cut(s) 107, 170
SmiMI CAYNNNNRTG 2 cut(s) 20, 143
SseBI AGGCCT 1 cut(s) 261
StuI AGGCCT 1 cut(s) 261
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 2 cut(s) 101, 226
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 3 cut(s) 27, 237, 291
Tru9I TTAA 3 cut(s) 27, 237, 291
TseI GCWGC 1 cut(s) 148
VpaK11BI GGWCC 2 cut(s) 107, 170
XmiI GTMKAC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.