RchiOBHm_Chr4g0430751

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0009761
Physical Location & Seq
Reverse (-)
55173385 .. 55174441
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
ATGCACTTGGAAACTTTAGTGGAGAATGTTCGATCGGTCCCTGGGAACGAGTTGATTGCTGACTTGGACAGGTTTGTGAGGCGAAAGGAATTTTATGGCAGAGTAGGCAAGGCATGGAAACGAGGGTACTTGTTGTATGGTCCTCCTGGCACTGGAAAGTCGAGCTTGATTGCAGCCATGGCTAATTACCTCAAGTTTGATATCTATGATTTGGAGCTTACATATTTACACAGCAACTCTGAGCTTAGGAGACTGTTAGTCTCCACCGCAAATCGATCAATCATAGTGATTGAGGATATTGACTGCAGCATTGAATTGAAGGACAGACAAGTTAGAGGAACCAACCCCAGTGACAGCCAGAGGATAATCGTGTTTACCACCAACTACAAGGACAAGCCAGATCCTGCATTGTTGAGACCAGGCCGGATGGATATGCATGTTCACATGTCCTACTGCACACCATGTGGATTCAAAACCCTTGCTCATAACCACTTTTAA

Protein Analysis

165

Amino Acids

18.93

Weight (kDa)

8.99

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 43 - 150 8.2e-16 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 267
AclWI GGATC 1 cut(s) 395
AcsI RAATTY 1 cut(s) 89
AdeI CACNNNGTG 1 cut(s) 464
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 152
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 3 cut(s) 314, 319, 472
AhdI GACNNNNNGTC 1 cut(s) 257
AjnI CCWGG 3 cut(s) 40, 145, 418
AluBI AGCT 3 cut(s) 165, 217, 244
AluI AGCT 3 cut(s) 165, 217, 244
Alw26I GTCTC 3 cut(s) 244, 265, 409
AlwI GGATC 1 cut(s) 395
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 2 cut(s) 173, 306
ApoI RAATTY 1 cut(s) 89
AspS9I GGNCC 2 cut(s) 37, 140
AvaII GGWCC 2 cut(s) 37, 140
BbvI GCAGC 2 cut(s) 185, 318
BccI CCATC 1 cut(s) 421
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BciT130I CCWGG 3 cut(s) 42, 147, 420
BcoDI GTCTC 3 cut(s) 244, 265, 409
BfmI CTRYAG 1 cut(s) 304
BisI GCNGC 2 cut(s) 174, 307
BlsI GCNGC 2 cut(s) 175, 308
Bme1390I CCNGG 3 cut(s) 42, 147, 420
Bme18I GGWCC 2 cut(s) 37, 140
BmeRI GACNNNNNGTC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 37, 140
BmiI GGNNCC 2 cut(s) 39, 340
BmrFI CCNGG 3 cut(s) 42, 147, 420
BmrI ACTGGG 1 cut(s) 342
BmuI ACTGGG 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 176
Bsa29I ATCGAT 1 cut(s) 274
BsaI GGTCTC 1 cut(s) 409
BsaJI CCNNGG 3 cut(s) 40, 41, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 157, 348
BseBI CCWGG 3 cut(s) 42, 147, 420
BseCI ATCGAT 1 cut(s) 274
BseDI CCNNGG 3 cut(s) 40, 41, 177
BseGI GGATG 1 cut(s) 432
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 2 cut(s) 157, 348
BseXI GCAGC 2 cut(s) 185, 318
BsgI GTGCAG 1 cut(s) 439
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 1 cut(s) 423
BshVI ATCGAT 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 35
BsiSI CCGG 1 cut(s) 424
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 3 cut(s) 244, 265, 409
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 1 cut(s) 423
Bso31I GGTCTC 1 cut(s) 409
Bsp143I GATC 3 cut(s) 32, 275, 400
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 1 cut(s) 267
BspANI GGCC 1 cut(s) 423
BspCNI CTCAG 1 cut(s) 232
BspDI ATCGAT 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 39, 340
BspMAI CTGCAG 1 cut(s) 308
BspPI GGATC 1 cut(s) 395
BspTNI GGTCTC 1 cut(s) 409
BsrI ACTGG 2 cut(s) 157, 348
BssECI CCNNGG 3 cut(s) 40, 41, 177
BssMI GATC 3 cut(s) 32, 275, 400
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 3 cut(s) 42, 147, 420
Bst4CI ACNGT 1 cut(s) 255
BstDEI CTNAG 2 cut(s) 240, 245
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 432
BstKTI GATC 3 cut(s) 35, 278, 403
BstMAI GTCTC 3 cut(s) 244, 265, 409
BstMBI GATC 3 cut(s) 32, 275, 400
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 2 cut(s) 105, 179
BstNI CCWGG 3 cut(s) 42, 147, 420
BstNSI RCATGY 2 cut(s) 440, 448
BstSCI CCNGG 3 cut(s) 40, 145, 418
BstSFI CTRYAG 1 cut(s) 304
BstV1I GCAGC 2 cut(s) 185, 318
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
Bsu15I ATCGAT 1 cut(s) 274
BsuRI GGCC 1 cut(s) 423
BsuTUI ATCGAT 1 cut(s) 274
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 432
BtsIMutI CAGTG 2 cut(s) 150, 355
CaiI CAGNNNCTG 1 cut(s) 404
Cfr13I GGNCC 2 cut(s) 37, 140
ClaI ATCGAT 1 cut(s) 274
Csp6I GTAC 1 cut(s) 127
CviAII CATG 5 cut(s) 114, 178, 437, 445, 462
CviJI RGCY 8 cut(s) 165, 176, 182, 217, 244, 357, 397, 423
CviKI_1 RGCY 8 cut(s) 165, 176, 182, 217, 244, 357, 397, 423
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 2 cut(s) 240, 245
DpnI GATC 3 cut(s) 34, 277, 402
DpnII GATC 3 cut(s) 32, 275, 400
DraIII CACNNNGTG 1 cut(s) 464
DriI GACNNNNNGTC 1 cut(s) 257
Eam1105I GACNNNNNGTC 1 cut(s) 257
Eco130I CCWWGG 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 409
Eco32I GATATC 1 cut(s) 202
Eco47I GGWCC 2 cut(s) 37, 140
EcoRII CCWGG 3 cut(s) 40, 145, 418
EcoRV GATATC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 177
EcoT22I ATGCAT 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 5 cut(s) 117, 181, 440, 448, 465
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 1 cut(s) 23
FatI CATG 5 cut(s) 113, 177, 436, 444, 461
Fnu4HI GCNGC 2 cut(s) 174, 307
FokI GGATG 1 cut(s) 439
Fsp4HI GCNGC 2 cut(s) 174, 307
GluI GCNGC 2 cut(s) 174, 307
HaeIII GGCC 1 cut(s) 423
HapII CCGG 1 cut(s) 424
Hin1II CATG 5 cut(s) 117, 181, 440, 448, 465
HinfI GANTC 1 cut(s) 468
HpaII CCGG 1 cut(s) 424
Hpy166II GTNNAC 2 cut(s) 375, 442
Hpy188I TCNGA 1 cut(s) 241
Hpy8I GTNNAC 2 cut(s) 375, 442
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 6 cut(s) 4, 173, 306, 407, 436, 456
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 179
HpyF3I CTNAG 2 cut(s) 240, 245
Hsp92II CATG 5 cut(s) 117, 181, 440, 448, 465
Kzo9I GATC 3 cut(s) 32, 275, 400
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 2 cut(s) 185, 318
MaeIII GTNAC 1 cut(s) 350
MalI GATC 3 cut(s) 34, 277, 402
MboI GATC 3 cut(s) 32, 275, 400
MflI RGATCY 1 cut(s) 400
MluCI AATT 3 cut(s) 89, 184, 314
MnlI CCTC 7 cut(s) 72, 116, 153, 200, 286, 329, 354
Mph1103I ATGCAT 1 cut(s) 438
MseI TTAA 1 cut(s) 496
MspI CCGG 1 cut(s) 424
MspR9I CCNGG 3 cut(s) 42, 147, 420
MvaI CCWGG 3 cut(s) 42, 147, 420
MwoI GCNNNNNNNGC 2 cut(s) 105, 179
NcoI CCATGG 1 cut(s) 177
NdeII GATC 3 cut(s) 32, 275, 400
NlaIII CATG 5 cut(s) 117, 181, 440, 448, 465
NlaIV GGNNCC 2 cut(s) 39, 340
NmuCI GTSAC 1 cut(s) 350
NsiI ATGCAT 1 cut(s) 438
NspI RCATGY 2 cut(s) 440, 448
PasI CCCWGGG 1 cut(s) 41
PciI ACATGT 1 cut(s) 444
PfeI GAWTC 1 cut(s) 468
PkrI GCNGC 2 cut(s) 175, 308
Ple19I CGATCG 1 cut(s) 35
PscI ACATGT 1 cut(s) 444
Psp6I CCWGG 3 cut(s) 40, 145, 418
PspGI CCWGG 3 cut(s) 40, 145, 418
PspN4I GGNNCC 2 cut(s) 39, 340
PspPI GGNCC 2 cut(s) 37, 140
PstI CTGCAG 1 cut(s) 308
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 1 cut(s) 400
PvuI CGATCG 1 cut(s) 35
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 496
SatI GCNGC 2 cut(s) 174, 307
Sau3AI GATC 3 cut(s) 32, 275, 400
Sau96I GGNCC 2 cut(s) 37, 140
ScrFI CCNGG 3 cut(s) 42, 147, 420
SetI ASST 5 cut(s) 74, 167, 192, 219, 246
SfcI CTRYAG 1 cut(s) 304
SinI GGWCC 2 cut(s) 37, 140
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 3 cut(s) 89, 184, 314
SsiI CCGC 1 cut(s) 267
StyD4I CCNGG 3 cut(s) 40, 145, 418
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 255
TaqI TCGA 3 cut(s) 31, 161, 274
TaqII GACCGA 1 cut(s) 25
TasI AATT 3 cut(s) 89, 184, 314
TfiI GAWTC 1 cut(s) 468
Tru1I TTAA 1 cut(s) 496
Tru9I TTAA 1 cut(s) 496
TscAI CASTG 2 cut(s) 157, 355
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 2 cut(s) 173, 306
Tsp45I GTSAC 1 cut(s) 350
TspRI CASTG 2 cut(s) 157, 355
VpaK11BI GGWCC 2 cut(s) 37, 140
XapI RAATTY 1 cut(s) 89
XceI RCATGY 2 cut(s) 440, 448
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.