RchiOBHm_Chr4g0435651

ATP-dependent Clp protease adapter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004724
Physical Location & Seq
Reverse (-)
59117293 .. 59119030
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
ATGAAAGTTGGTACACCAAAGTTCAGGGAGACTGCGGTATGTGGGAGTCTGCCCCTCTCACCTAACCACGCCTTCAATCCTAAACCAGGAGACAAACACTTCCTTTGTAAAGGTCCATGCACCAATCATTGCATTCCCATGGATGTATCAACAGCAGCACCTGGTAAAGGAGGAGGATTGTTAGAAAGGCCTGTTATAGAGAAAACCTCTCCCGCTCGTGAGTCTGAGTTTGATCTCAGGAAATCGAGGCAAATATCTCCTCCATACCGTGTGATATTGCACAATGACAACTTCAATAAACGGGAATATGTAGTCCAAGTGCTGATGAAGGTCATCCTGGGCATGACCCTTGACAATGCTGTTAATATCATGCAAGAAGCACACCACAATGGCTTGTCAGTGGTGATCATATGTGCTCAGGCTGATGCCGAAGAACACTGCACGCAACTCAGGCACAATGGGCTTCTGAGTTCGATTGAACCCGCAAGTGGGGGATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ClpS

Protein Analysis

166

Amino Acids

18.09

Weight (kDa)

8.19

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ClpS PF02617 86 - 152 1.4e-18 ATP-dependent Clp protease adaptor protein ClpS
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 215
AciI CCGC 3 cut(s) 35, 213, 483
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 4 cut(s) 86, 167, 488, 489
AgsI TTSAA 3 cut(s) 76, 295, 479
AjnI CCWGG 3 cut(s) 85, 160, 336
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 2 cut(s) 23, 84
AlwNI CAGNNNCTG 1 cut(s) 161
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 51, 415
AvaII GGWCC 1 cut(s) 113
BauI CACGAG 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 418
BbvI GCAGC 1 cut(s) 167
BciT130I CCWGG 3 cut(s) 87, 162, 338
BclI TGATCA 1 cut(s) 405
BcoDI GTCTC 2 cut(s) 23, 84
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 3 cut(s) 87, 162, 338
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmrFI CCNGG 3 cut(s) 87, 162, 338
BmsI GCATC 1 cut(s) 415
BplI GAGNNNNNCTC 2 cut(s) 191, 223
Bpu10I CCTNAGC 1 cut(s) 417
BsaJI CCNNGG 2 cut(s) 138, 337
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 167, 488, 489
Bse3DI GCAATG 1 cut(s) 127
BseBI CCWGG 3 cut(s) 87, 162, 338
BseDI CCNNGG 2 cut(s) 138, 337
BseGI GGATG 3 cut(s) 148, 333, 500
BseLI CCNNNNNNNGG 4 cut(s) 86, 167, 488, 489
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 5 cut(s) 216, 250, 431, 458, 463
BseRI GAGGAG 2 cut(s) 186, 249
BseXI GCAGC 1 cut(s) 167
BsgI GTGCAG 1 cut(s) 424
BshFI GGCC 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 418
BslI CCNNNNNNNGG 4 cut(s) 86, 167, 488, 489
BsmAI GTCTC 2 cut(s) 23, 84
BsmI GAATGC 1 cut(s) 132
BsnI GGCC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 418
Bsp143I GATC 2 cut(s) 232, 405
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 3 cut(s) 35, 213, 483
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 5 cut(s) 217, 249, 430, 459, 462
BsrBI CCGCTC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 138, 337
BssMI GATC 2 cut(s) 232, 405
BssSI CACGAG 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 216
Bst2UI CCWGG 3 cut(s) 87, 162, 338
Bst4CI ACNGT 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 443
BstDEI CTNAG 5 cut(s) 225, 236, 417, 449, 467
BstDSI CCRYGG 1 cut(s) 138
BstENI CCTNNNNNAGG 2 cut(s) 84, 165
BstF5I GGATG 3 cut(s) 148, 333, 500
BstKTI GATC 2 cut(s) 235, 408
BstMAI GTCTC 2 cut(s) 23, 84
BstMBI GATC 2 cut(s) 232, 405
BstMWI GCNNNNNNNGC 2 cut(s) 451, 460
BstNI CCWGG 3 cut(s) 87, 162, 338
BstSCI CCNGG 3 cut(s) 85, 160, 336
BstV1I GCAGC 1 cut(s) 167
BsuRI GGCC 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 3 cut(s) 148, 333, 500
BtsI GCAGTG 1 cut(s) 436
BtsIMutI CAGTG 2 cut(s) 405, 436
Cac8I GCNNGC 1 cut(s) 443
CaiI CAGNNNCTG 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 113
CsiI ACCWGGT 1 cut(s) 160
Csp6I GTAC 1 cut(s) 12
CviAII CATG 4 cut(s) 117, 139, 343, 370
CviJI RGCY 4 cut(s) 190, 393, 422, 463
CviKI_1 RGCY 4 cut(s) 190, 393, 422, 463
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 5 cut(s) 225, 236, 417, 449, 467
DpnI GATC 2 cut(s) 234, 407
DpnII GATC 2 cut(s) 232, 405
Eco130I CCWWGG 1 cut(s) 138
Eco147I AGGCCT 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 113
EcoNI CCTNNNNNAGG 2 cut(s) 84, 165
EcoRII CCWGG 3 cut(s) 85, 160, 336
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 4 cut(s) 120, 142, 346, 373
FatI CATG 4 cut(s) 116, 138, 342, 369
FauI CCCGC 2 cut(s) 220, 490
FauNDI CATATG 1 cut(s) 410
FbaI TGATCA 1 cut(s) 405
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 2 cut(s) 155, 320
Fsp4HI GCNGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 190
Hin1II CATG 4 cut(s) 120, 142, 346, 373
HinfI GANTC 2 cut(s) 46, 221
HphI GGTGA 2 cut(s) 51, 415
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 226, 468
Hpy188III TCNNGA 2 cut(s) 218, 238
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 82, 322
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 5 cut(s) 120, 132, 280, 373, 441
HpyF10VI GCNNNNNNNGC 2 cut(s) 451, 460
HpyF3I CTNAG 5 cut(s) 225, 236, 417, 449, 467
Hsp92II CATG 4 cut(s) 120, 142, 346, 373
Ksp22I TGATCA 1 cut(s) 405
Kzo9I GATC 2 cut(s) 232, 405
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 1 cut(s) 415
MabI ACCWGGT 1 cut(s) 160
MalI GATC 2 cut(s) 234, 407
MbiI CCGCTC 1 cut(s) 215
MboI GATC 2 cut(s) 232, 405
MboII GAAGA 1 cut(s) 443
MhlI GDGCHC 1 cut(s) 418
MlyI GAGTC 2 cut(s) 55, 230
MnlI CCTC 6 cut(s) 65, 164, 167, 217, 240, 270
MseI TTAA 2 cut(s) 363, 499
MslI CAYNNNNRTG 2 cut(s) 137, 387
MspR9I CCNGG 3 cut(s) 87, 162, 338
Mva1269I GAATGC 1 cut(s) 132
MvaI CCWGG 3 cut(s) 87, 162, 338
MwoI GCNNNNNNNGC 2 cut(s) 451, 460
NcoI CCATGG 1 cut(s) 138
NdeI CATATG 1 cut(s) 410
NdeII GATC 2 cut(s) 232, 405
NlaIII CATG 4 cut(s) 120, 142, 346, 373
PceI AGGCCT 1 cut(s) 190
PctI GAATGC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 2 cut(s) 54, 229
PpsI GAGTC 2 cut(s) 54, 229
Psp6I CCWGG 3 cut(s) 85, 160, 336
PspGI CCWGG 3 cut(s) 85, 160, 336
PspPI GGNCC 1 cut(s) 113
PstNI CAGNNNCTG 1 cut(s) 161
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 2 cut(s) 137, 387
SaqAI TTAA 2 cut(s) 363, 499
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 2 cut(s) 232, 405
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 2 cut(s) 55, 230
ScrFI CCNGG 3 cut(s) 87, 162, 338
SduI GDGCHC 1 cut(s) 418
SetI ASST 5 cut(s) 64, 115, 163, 209, 333
SexAI ACCWGGT 1 cut(s) 160
SfaNI GCATC 1 cut(s) 415
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 2 cut(s) 137, 387
SseBI AGGCCT 1 cut(s) 190
SsiI CCGC 3 cut(s) 35, 213, 483
StuI AGGCCT 1 cut(s) 190
StyD4I CCNGG 3 cut(s) 85, 160, 336
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 2 cut(s) 245, 473
Tru1I TTAA 2 cut(s) 363, 499
Tru9I TTAA 2 cut(s) 363, 499
TscAI CASTG 2 cut(s) 405, 443
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 17, 341
TspRI CASTG 2 cut(s) 405, 443
VpaK11BI GGWCC 1 cut(s) 113
XagI CCTNNNNNAGG 2 cut(s) 84, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.