Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006041

Physical Location & Seq

Genomic Coordinates Reverse (-)

16767931 .. 16768434

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAATATACCAGCTCCAAGAAAAGACCTCATGGTAGTCAATATGGGTCCCCACTATCCATCAATGCATGGTGTTCTTCGACTTATCATTACCCTAGATGGTGAAGATGTTATTGACTGTGAACCAATATTGGGTTATTTACACCAAGGGATGGAAAAAATTGTGGAAAACCGAACAATTATACAATATTTACCTTATGTAACACATTGGGATTATTTAGCTACTATGTTCACAGAAGCAATAACGGTAAATGGACCGGAACAGCTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAATAATTATGTTGGAGTTGAGTCGTATAGCTTCTCATCTGTTATGGCTCGGCCCTTTTATGGCGGATATTGGTGCACAGACTCCATTTTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATCTATTTGAATCTGCCGCCGGTATGAGAATGATGCATAATTCTTTTCAGATCGGGGGGGGGGGGGGGGGGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0055035 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Complex1_49kDa Fer4 NADHdh

Protein Analysis

167

Amino Acids

18.87

Weight (kDa)

5.61

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Complex1_49kDa	PF00346	124 - 162	8e-11	Respiratory-chain NADH dehydrogenase, 49 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00510
fragaria_vesca	FvH4_2g05080 FvH4_c1g00130
pyrus_communis	pycom06g06240 pycom09g13070
rosa_chinensis	RchiOBHm_Chr3g0470811 RchiOBHm_Chr7g0212321 RchiOBHm_MTg0498261
rosa_laevigata	RLG00000000004 RLG00000000028 RLG00000000041 RLG00000000042 RLG00000000104 RLG00000000105 RLG00000000209 RLG00000000357 RLG00000000376 RLG00000000392 RLG00000037096 RLG00000037115
rosa_multiflora	Rmu_sc0002790.1_g000022 Rmu_sc0003825.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119150
rosa_rugosa	Rorug07G0324900 RorugMtG0001100 RorugMtG0003200.1
rosa_wichuraiana	Rw0G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	151
AciI	CCGC	2 cut(s)	368, 444
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	3 cut(s)	131, 151, 364
AgsI	TTSAA	2 cut(s)	278, 437
AluBI	AGCT	5 cut(s)	14, 221, 265, 297, 335
AluI	AGCT	5 cut(s)	14, 221, 265, 297, 335
Alw21I	GWGCWC	1 cut(s)	382
Alw44I	GTGCAC	1 cut(s)	378
AoxI	GGCC	1 cut(s)	355
ApaLI	GTGCAC	1 cut(s)	378
AspS9I	GGNCC	3 cut(s)	47, 254, 356
AsuHPI	GGTGA	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	47, 254
BaeGI	GKGCMC	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	382
BccI	CCATC	3 cut(s)	67, 92, 145
BfaI	CTAG	1 cut(s)	95
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
Bme18I	GGWCC	2 cut(s)	47, 254
BmgT120I	GGNCC	3 cut(s)	47, 254, 356
BmiI	GGNNCC	2 cut(s)	48, 49
BmsI	GCATC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	145
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 151, 364
Bse118I	RCCGGY	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	3 cut(s)	131, 151, 364
BseSI	GKGCMC	1 cut(s)	382
BseYI	CCCAGC	1 cut(s)	265
BshFI	GGCC	1 cut(s)	357
BsiHKAI	GWGCWC	1 cut(s)	382
BsiSI	CCGG	2 cut(s)	257, 447
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	3 cut(s)	131, 151, 364
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	2 cut(s)	427, 477
BspACI	CCGC	2 cut(s)	368, 444
BspANI	GGCC	1 cut(s)	357
BspLI	GGNNCC	2 cut(s)	48, 49
BsrFI	RCCGGY	1 cut(s)	446
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	2 cut(s)	427, 477
BssT1I	CCWWGG	1 cut(s)	145
Bst4CI	ACNGT	2 cut(s)	119, 247
BstC8I	GCNNGC	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	156
BstKTI	GATC	2 cut(s)	430, 480
BstMBI	GATC	2 cut(s)	427, 477
BstSLI	GKGCMC	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	3 cut(s)	47, 254, 356
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	2 cut(s)	31, 68
CviJI	RGCY	8 cut(s)	14, 221, 265, 293, 297, 335, 352, 357
CviKI_1	RGCY	8 cut(s)	14, 221, 265, 293, 297, 335, 352, 357
CviQI	GTAC	1 cut(s)	281
DpnI	GATC	2 cut(s)	429, 479
DpnII	GATC	2 cut(s)	427, 477
EciI	GGCGGA	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	145
Eco47I	GGWCC	2 cut(s)	47, 254
EcoO109I	RGGNCCY	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	145
EcoT22I	ATGCAT	2 cut(s)	69, 465
ErhI	CCWWGG	1 cut(s)	145
FaeI	CATG	2 cut(s)	34, 71
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	2 cut(s)	30, 67
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	1 cut(s)	444
GsaI	CCCAGC	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	357
HapII	CCGG	2 cut(s)	257, 447
Hin1II	CATG	2 cut(s)	34, 71
HinfI	GANTC	3 cut(s)	325, 385, 437
HpaII	CCGG	2 cut(s)	257, 447
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	3 cut(s)	122, 231, 380
Hpy188I	TCNGA	3 cut(s)	305, 407, 477
Hpy8I	GTNNAC	3 cut(s)	122, 231, 380
HpyCH4III	ACNGT	2 cut(s)	119, 247
HpyCH4V	TGCA	3 cut(s)	67, 380, 463
Hsp92II	CATG	2 cut(s)	34, 71
KflI	GGGWCCC	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	427, 477
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	5 cut(s)	24, 251, 270, 307, 460
LweI	GCATC	1 cut(s)	450
MaeI	CTAG	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	429, 479
MboI	GATC	2 cut(s)	427, 477
MboII	GAAGA	2 cut(s)	68, 116
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	5 cut(s)	159, 177, 309, 416, 466
MlyI	GAGTC	2 cut(s)	334, 379
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	1 cut(s)	38
Mph1103I	ATGCAT	2 cut(s)	69, 465
MspA1I	CMGCKG	1 cut(s)	265
MspI	CCGG	2 cut(s)	257, 447
NdeII	GATC	2 cut(s)	427, 477
NlaIII	CATG	2 cut(s)	34, 71
NlaIV	GGNNCC	2 cut(s)	48, 49
NmeAIII	GCCGAG	1 cut(s)	333
NsiI	ATGCAT	2 cut(s)	69, 465
PfeI	GAWTC	1 cut(s)	437
PflMI	CCANNNNNTGG	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	445
PleI	GAGTC	2 cut(s)	333, 379
PpsI	GAGTC	2 cut(s)	333, 379
PpuMI	RGGWCCY	1 cut(s)	47
Psp5II	RGGWCCY	1 cut(s)	47
PspFI	CCCAGC	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	48, 49
PspPI	GGNCC	3 cut(s)	47, 254, 356
PspPPI	RGGWCCY	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	265
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	2 cut(s)	427, 477
Sau96I	GGNCC	3 cut(s)	47, 254, 356
SchI	GAGTC	2 cut(s)	334, 379
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	8 cut(s)	16, 30, 196, 223, 267, 286, 299, 337
SfaNI	GCATC	1 cut(s)	450
SinI	GGWCC	2 cut(s)	47, 254
Sse9I	AATT	5 cut(s)	159, 177, 309, 416, 466
SsiI	CCGC	2 cut(s)	368, 444
SspI	AATATT	3 cut(s)	129, 188, 274
SspMI	CTAG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	145
TaaI	ACNGT	2 cut(s)	119, 247
TaqI	TCGA	1 cut(s)	79
TasI	AATT	5 cut(s)	159, 177, 309, 416, 466
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	1 cut(s)	437
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	151
VneI	GTGCAC	1 cut(s)	378
VpaK11BI	GGWCC	2 cut(s)	47, 254
XspI	CTAG	1 cut(s)	95
Zsp2I	ATGCAT	2 cut(s)	69, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.