Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011614

Physical Location & Seq

Genomic Coordinates Forward (+)

24260466 .. 24263371

Gene Structure 2906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCACAGGTTTTTTCCTGTGACACAAGTTCAACTCTCTAATCCTGGAAACTCAAGGAATCAGCTTGCAAGAATGCTGGCCATTGATTCAAGTGGCTGCTTCATTGCTGCTAGTGCATATGTAGACCGGTTGGCTATGTTCTCTGTTTCAATGTCCGGAGGAAGTTGGGACATATCTCTAACTGGGAAGAACATCACTCTTGAGGTTGAGAGCAGTGACACCATCGATAATGTCAAAGCCAAGATCCGGGTACTCTCTTTTCTCTCTCTAATTTTGAACTTTTTCATTGATTTCTCTCTTTCTTTCATATCAACCAAATATATAATTTATCGAAACGATTTCCTACAACATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

118

Amino Acids

13.27

Weight (kDa)

7.91

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478521
rosa_laevigata	RLG00000023641
rosa_multiflora	Rmu_sc0001262.1_g000010 Rmu_sc0008105.1_g000006
rosa_roxburghii	Rroxscaffold_6G00403490
rosa_rugosa	Rorug03G0165800 Rorug03G0166100
rosa_samantha	Rh3AG216300 Rh3AG216700 Rh3AG216800 Rh3AG216900 Rh3AG218000 Rh3AG256500 Rh3BG249500 Rh3CG245300 Rh3CG246900 Rh3CG291400 Rh3DG243400 Rh3DG296000 Rh7CG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	123
AccIII	TCCGGA	1 cut(s)	155
AclWI	GGATC	1 cut(s)	238
AcoI	YGGCCR	1 cut(s)	78
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgeI	ACCGGT	1 cut(s)	126
AgsI	TTSAA	4 cut(s)	32, 90, 150, 277
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AlwI	GGATC	1 cut(s)	238
Aor13HI	TCCGGA	1 cut(s)	155
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	96, 107
AsiGI	ACCGGT	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	281
AsuC2I	CCSGG	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	83, 94
BccI	CCATC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	45
BcnI	CCSGG	1 cut(s)	248
BfaI	CTAG	1 cut(s)	111
BisI	GCNGC	2 cut(s)	97, 108
BlsI	GCNGC	2 cut(s)	98, 109
Bme1390I	CCNGG	2 cut(s)	45, 248
BmrFI	CCNGG	2 cut(s)	45, 248
BmrI	ACTGGG	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	192
BpuEI	CTTGAG	2 cut(s)	37, 221
BpuMI	CCSGG	1 cut(s)	248
Bsa29I	ATCGAT	1 cut(s)	225
BsaWI	WCCGGW	2 cut(s)	126, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse118I	RCCGGY	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	102
BseAI	TCCGGA	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	2 cut(s)	83, 94
BshFI	GGCC	1 cut(s)	80
BshTI	ACCGGT	1 cut(s)	126
BshVI	ATCGAT	1 cut(s)	225
BsiSI	CCGG	3 cut(s)	127, 156, 247
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	80
Bsp13I	TCCGGA	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	243
BspANI	GGCC	1 cut(s)	80
BspDI	ATCGAT	1 cut(s)	225
BspEI	TCCGGA	1 cut(s)	155
BspPI	GGATC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	126
BssMI	GATC	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	66, 78
BstKTI	GATC	1 cut(s)	246
BstMBI	GATC	1 cut(s)	243
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	2 cut(s)	43, 246
BstV1I	GCAGC	2 cut(s)	83, 94
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
Bsu15I	ATCGAT	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	80
BsuTUI	ATCGAT	1 cut(s)	225
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	2 cut(s)	66, 78
Cfr10I	RCCGGY	1 cut(s)	126
ClaI	ATCGAT	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	251
CspAI	ACCGGT	1 cut(s)	126
CviJI	RGCY	5 cut(s)	64, 80, 96, 134, 239
CviKI_1	RGCY	5 cut(s)	64, 80, 96, 134, 239
CviQI	GTAC	1 cut(s)	251
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	43
FaiI	YATR	8 cut(s)	118, 120, 137, 173, 308, 321, 323, 351
FaqI	GGGAC	1 cut(s)	182
FauNDI	CATATG	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	97, 108
Fsp4HI	GCNGC	2 cut(s)	97, 108
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	2 cut(s)	97, 108
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	3 cut(s)	127, 156, 247
HinfI	GANTC	2 cut(s)	58, 86
HpaII	CCGG	3 cut(s)	127, 156, 247
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	156, 200
Hpy8I	GTNNAC	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	4, 68, 116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
Kpn2I	TCCGGA	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	243
LpnPI	CCDG	8 cut(s)	30, 30, 57, 62, 140, 168, 169, 260
Lsp1109I	GCAGC	2 cut(s)	83, 94
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	2 cut(s)	19, 215
MalI	GATC	1 cut(s)	245
MboI	GATC	1 cut(s)	243
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	3 cut(s)	270, 324, 352
MluNI	TGGCCA	1 cut(s)	80
MnlI	CCTC	2 cut(s)	152, 196
Mox20I	TGGCCA	1 cut(s)	80
MroI	TCCGGA	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	80
MspI	CCGG	3 cut(s)	127, 156, 247
MspR9I	CCNGG	2 cut(s)	45, 248
Mva1269I	GAATGC	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	248
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	1 cut(s)	243
NmuCI	GTSAC	2 cut(s)	19, 215
PctI	GAATGC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	58, 86
PfoI	TCCNGGA	1 cut(s)	43
PinAI	ACCGGT	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	98, 109
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	243
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SatI	GCNGC	2 cut(s)	97, 108
Sau3AI	GATC	1 cut(s)	243
ScrFI	CCNGG	2 cut(s)	45, 248
SetI	ASST	3 cut(s)	11, 66, 207
SmlI	CTYRAG	2 cut(s)	52, 200
SmoI	CTYRAG	2 cut(s)	52, 200
Sse9I	AATT	3 cut(s)	270, 324, 352
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	43, 246
TaqI	TCGA	2 cut(s)	225, 331
TasI	AATT	3 cut(s)	270, 324, 352
TfiI	GAWTC	2 cut(s)	58, 86
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	2 cut(s)	19, 215
TseI	GCWGC	2 cut(s)	96, 107
Tsp45I	GTSAC	2 cut(s)	19, 215
TspDTI	ATGAA	3 cut(s)	91, 274, 295
TspRI	CASTG	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.