Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0011614

Physical Location & Seq

Genomic Coordinates Forward (+)

28293960 .. 28296818

Gene Structure 2859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG256500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCTACAGTGACCTACCCACCTCCACCACCATATTATAAGCTATACAAAAATTACTTGCATGATCCCAAATCAGCTCCTGAGCAGCCGCCATCAATTGAAGGGACATACATTTGCTATGTTGCTAATTACACCATAACCTGCTTCCAAGCTTGGAAGAACAGGGAGTGCGTCAACTATACCCAAAAGGCCCAAATATTGATGCTGGGCAAGGATCTTTTGGTGGTTGTTTGGGATTCCGGGAAGCTCTTGGTTCTCTCTTTCTGCAACGAAATGCACAGATTTTTTCCTGTGACACACGGTCAACTTTCTAATCCTGGAAACTCAAGGAATCAGCTTGCAAGAATGTTAGCAATTGATTCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

122

Amino Acids

14.02

Weight (kDa)

8.91

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	45 - 121	1.2e-08	RSE1/DDB1/CPSF1 first beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478521
rosa_laevigata	RLG00000023641
rosa_multiflora	Rmu_sc0001262.1_g000010 Rmu_sc0008105.1_g000006
rosa_roxburghii	Rroxscaffold_6G00403490
rosa_rugosa	Rorug03G0165800 Rorug03G0166100
rosa_samantha	Rh3AG216300 Rh3AG216700 Rh3AG216800 Rh3AG216900 Rh3AG218000 Rh3AG256500 Rh3BG249500 Rh3CG245300 Rh3CG246900 Rh3CG291400 Rh3DG243400 Rh3DG296000 Rh7CG431200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
Acc36I	ACCTGC	1 cut(s)	149
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	2 cut(s)	59, 222
AgsI	TTSAA	2 cut(s)	101, 363
AhdI	GACNNNNNGTC	1 cut(s)	300
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	5 cut(s)	43, 77, 152, 247, 337
AluI	AGCT	5 cut(s)	43, 77, 152, 247, 337
AlwI	GGATC	2 cut(s)	59, 222
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	190
AsuC2I	CCSGG	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	241
BfmI	CTRYAG	1 cut(s)	6
BfuAI	ACCTGC	1 cut(s)	149
BisI	GCNGC	2 cut(s)	86, 89
BlsI	GCNGC	2 cut(s)	87, 90
Bme1390I	CCNGG	2 cut(s)	241, 318
BmeRI	GACNNNNNGTC	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	190
BmrFI	CCNGG	2 cut(s)	241, 318
BmsI	GCATC	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	205
BshFI	GGCC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	64, 214
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	73
BspMI	ACCTGC	1 cut(s)	149
BspPI	GGATC	2 cut(s)	59, 222
BssMI	GATC	2 cut(s)	64, 214
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	2 cut(s)	10, 302
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	1 cut(s)	81
BstKTI	GATC	2 cut(s)	67, 217
BstMBI	GATC	2 cut(s)	64, 214
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	239, 316
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	191
BtsIMutI	CAGTG	1 cut(s)	15
BveI	ACCTGC	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	339
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	190
CseI	GACGC	1 cut(s)	160
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	8 cut(s)	5, 43, 77, 88, 152, 191, 247, 337
CviKI_1	RGCY	8 cut(s)	5, 43, 77, 88, 152, 191, 247, 337
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	2 cut(s)	66, 216
DpnII	GATC	2 cut(s)	64, 214
DriI	GACNNNNNGTC	1 cut(s)	300
Eam1105I	GACNNNNNGTC	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	316
FaeI	CATG	1 cut(s)	65
FaiI	YATR	8 cut(s)	34, 39, 46, 63, 109, 120, 137, 180
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	86, 89
Fsp4HI	GCNGC	2 cut(s)	86, 89
GluI	GCNGC	2 cut(s)	86, 89
GsaI	CCCAGC	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	160
Hin1II	CATG	1 cut(s)	65
HincII	GTYRAC	2 cut(s)	175, 305
HindII	GTYRAC	2 cut(s)	175, 305
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	3 cut(s)	236, 331, 359
HpaII	CCGG	1 cut(s)	240
Hpy166II	GTNNAC	2 cut(s)	175, 305
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	2 cut(s)	175, 305
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	2 cut(s)	10, 302
HpyCH4V	TGCA	4 cut(s)	61, 267, 277, 341
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	65
Kzo9I	GATC	2 cut(s)	64, 214
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	8 cut(s)	93, 148, 154, 191, 253, 303, 303, 330
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	10, 292
MalI	GATC	2 cut(s)	66, 216
MboI	GATC	2 cut(s)	64, 214
MboII	GAAGA	1 cut(s)	169
MfeI	CAATTG	2 cut(s)	96, 354
MflI	RGATCY	1 cut(s)	214
MluCI	AATT	4 cut(s)	52, 96, 127, 354
MnlI	CCTC	1 cut(s)	33
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	2 cut(s)	241, 318
MunI	CAATTG	2 cut(s)	96, 354
MvaI	CCWGG	1 cut(s)	318
NciI	CCSGG	1 cut(s)	241
NdeII	GATC	2 cut(s)	64, 214
NlaIII	CATG	1 cut(s)	65
NmuCI	GTSAC	2 cut(s)	10, 292
PfeI	GAWTC	3 cut(s)	236, 331, 359
PfoI	TCCNGGA	2 cut(s)	239, 316
PkrI	GCNGC	2 cut(s)	87, 90
PsiI	TTATAA	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	214
SatI	GCNGC	2 cut(s)	86, 89
Sau3AI	GATC	2 cut(s)	64, 214
Sau96I	GGNCC	1 cut(s)	190
ScrFI	CCNGG	2 cut(s)	241, 318
SetI	ASST	9 cut(s)	17, 25, 45, 79, 143, 154, 249, 339, 368
SfaNI	GCATC	1 cut(s)	192
SfcI	CTRYAG	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	4 cut(s)	52, 96, 127, 354
SsiI	CCGC	1 cut(s)	89
SspI	AATATT	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	239, 316
TaaI	ACNGT	2 cut(s)	10, 302
TasI	AATT	4 cut(s)	52, 96, 127, 354
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	3 cut(s)	236, 331, 359
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	2 cut(s)	10, 292
TseI	GCWGC	1 cut(s)	85
Tsp45I	GTSAC	2 cut(s)	10, 292
TspRI	CASTG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.