Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0011614

Physical Location & Seq

Genomic Coordinates Forward (+)

29654812 .. 29665905

Gene Structure 11094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG291400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAATTTGGCAACAAGGTGCTTGAAATGGCTACAGCGACCTACCCACCTCCACCACCATATTATAAGCTATACAAAGATTACTTGCATGATCCCAAATCAGCTCCTGAGCAGCCGCCATCAATTGAAGGGACATACATTTGCTATGTTGCTAATTACACCACAGATAACCTGCTTCCAAGCTTGGAAGAACAGGGAGTGCGTCAACTGTACCCAAAAGGCCCAAATATTGATGCTGGGCAAGGATCTTTTGGTGGTTGTTTGGGATTCCGGGAAGCTCTTGGTTCTCTCTTTCTGCAACGAAATGCACAGCCAGTTACCATGCGTGTTGGATCTGGTGAGTGTAAGAGAACAACTGTACCTGACATAACAGGTTTACACAATGAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

130

Amino Acids

14.39

Weight (kDa)

6.72

Isoelectric Point (pI)

55.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	13 - 78	2.9e-06	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478521
rosa_laevigata	RLG00000023641
rosa_multiflora	Rmu_sc0001262.1_g000010 Rmu_sc0008105.1_g000006
rosa_roxburghii	Rroxscaffold_6G00403490
rosa_rugosa	Rorug03G0165800 Rorug03G0166100
rosa_samantha	Rh3AG216300 Rh3AG216700 Rh3AG216800 Rh3AG216900 Rh3AG218000 Rh3AG256500 Rh3BG249500 Rh3CG245300 Rh3CG246900 Rh3CG291400 Rh3DG243400 Rh3DG296000 Rh7CG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	66
Acc36I	ACCTGC	1 cut(s)	180
AciI	CCGC	1 cut(s)	116
AclI	AACGTT	1 cut(s)	388
AclWI	GGATC	3 cut(s)	86, 253, 340
AcsI	RAATTY	1 cut(s)	5
AfaI	GTAC	2 cut(s)	212, 360
AgsI	TTSAA	2 cut(s)	26, 128
AluBI	AGCT	4 cut(s)	70, 104, 183, 278
AluI	AGCT	4 cut(s)	70, 104, 183, 278
AlwI	GGATC	3 cut(s)	86, 253, 340
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	350
BaeI	ACNNNNGTAYC	2 cut(s)	342, 375
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	33
BfuAI	ACCTGC	1 cut(s)	180
BisI	GCNGC	2 cut(s)	113, 116
BlsI	GCNGC	2 cut(s)	114, 117
Bme1390I	CCNGG	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	108
BpuMI	CCSGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	124
BseYI	CCCAGC	1 cut(s)	236
BshFI	GGCC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	91, 245, 332
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	180
BspPI	GGATC	3 cut(s)	86, 253, 340
BsrI	ACTGG	1 cut(s)	314
BssMI	GATC	3 cut(s)	91, 245, 332
Bst4CI	ACNGT	2 cut(s)	210, 358
BstDEI	CTNAG	1 cut(s)	108
BstKTI	GATC	3 cut(s)	94, 248, 335
BstMBI	GATC	3 cut(s)	91, 245, 332
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	2 cut(s)	245, 332
BstYI	RGATCY	2 cut(s)	245, 332
BsuRI	GGCC	1 cut(s)	222
BveI	ACCTGC	1 cut(s)	180
CaiI	CAGNNNCTG	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	221
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	211, 359
CviAII	CATG	2 cut(s)	89, 322
CviJI	RGCY	8 cut(s)	32, 70, 104, 115, 183, 222, 278, 313
CviKI_1	RGCY	8 cut(s)	32, 70, 104, 115, 183, 222, 278, 313
CviQI	GTAC	2 cut(s)	211, 359
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	3 cut(s)	93, 247, 334
DpnII	GATC	3 cut(s)	91, 245, 332
FaeI	CATG	2 cut(s)	92, 325
FaiI	YATR	8 cut(s)	61, 66, 73, 90, 136, 147, 323, 368
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	2 cut(s)	88, 321
Fnu4HI	GCNGC	2 cut(s)	113, 116
Fsp4HI	GCNGC	2 cut(s)	113, 116
GluI	GCNGC	2 cut(s)	113, 116
GsaI	CCCAGC	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	1 cut(s)	271
HgaI	GACGC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	92, 325
HincII	GTYRAC	1 cut(s)	206
HindII	GTYRAC	1 cut(s)	206
HindIII	AAGCTT	1 cut(s)	181
HinfI	GANTC	1 cut(s)	267
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	2 cut(s)	206, 377
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	2 cut(s)	206, 377
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	2 cut(s)	210, 358
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	3 cut(s)	88, 298, 308
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	2 cut(s)	92, 325
Kzo9I	GATC	3 cut(s)	91, 245, 332
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	9 cut(s)	120, 179, 185, 222, 284, 321, 327, 357, 375
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	223
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	3 cut(s)	93, 247, 334
MboI	GATC	3 cut(s)	91, 245, 332
MboII	GAAGA	1 cut(s)	200
MfeI	CAATTG	1 cut(s)	123
MflI	RGATCY	2 cut(s)	245, 332
MluCI	AATT	3 cut(s)	5, 123, 154
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	1 cut(s)	60
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	272
MunI	CAATTG	1 cut(s)	123
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	3 cut(s)	91, 245, 332
NlaIII	CATG	2 cut(s)	92, 325
PfeI	GAWTC	1 cut(s)	267
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	2 cut(s)	114, 117
PsiI	TTATAA	1 cut(s)	66
Psp1406I	AACGTT	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	236
PspPI	GGNCC	1 cut(s)	221
PstNI	CAGNNNCTG	1 cut(s)	107
PsuI	RGATCY	2 cut(s)	245, 332
RsaI	GTAC	2 cut(s)	212, 360
RsaNI	GTAC	2 cut(s)	211, 359
SatI	GCNGC	2 cut(s)	113, 116
Sau3AI	GATC	3 cut(s)	91, 245, 332
Sau96I	GGNCC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	272
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	33
Sse9I	AATT	3 cut(s)	5, 123, 154
SsiI	CCGC	1 cut(s)	116
SspI	AATATT	1 cut(s)	229
StyD4I	CCNGG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	210, 358
TaiI	ACGT	1 cut(s)	391
TasI	AATT	3 cut(s)	5, 123, 154
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.