Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011614

Physical Location & Seq

Genomic Coordinates Reverse (-)

25951772 .. 25959667

Gene Structure 7896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCTACAGCGACCTACCCACCTCCACCACCGTATTATAAGCTATACAAAGATTACTTGCAAAATCCCAAATCAGCTCCTGAGCAGCCGCCGCCAATTGAAGGGACATACATTTGCTATGTTGCTAATCACACCACAGATGACCTGCTTCCAAGCTTGGAAGAACAGGGAGTGTGTCAACTGTACCCAAAAGGCCCAAATATTGATGCTGGGCAAGGATCTTTTGGTGGTTGTTTGGGATTCCGGGAAGCTCTTGGTTCTCTCTTTCTGCAACGAAATGCACAGGTATATAAGCATTTTCTTGCTTCTGTAACAATAGTACCAAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

110

Amino Acids

12.08

Weight (kDa)

6.04

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	4 - 69	1.4e-06	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478521
rosa_laevigata	RLG00000023641
rosa_multiflora	Rmu_sc0001262.1_g000010 Rmu_sc0008105.1_g000006
rosa_roxburghii	Rroxscaffold_6G00403490
rosa_rugosa	Rorug03G0165800 Rorug03G0166100
rosa_samantha	Rh3AG216300 Rh3AG216700 Rh3AG216800 Rh3AG216900 Rh3AG218000 Rh3AG256500 Rh3BG249500 Rh3CG245300 Rh3CG246900 Rh3CG291400 Rh3DG243400 Rh3DG296000 Rh7CG431200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
Acc36I	ACCTGC	1 cut(s)	153
AciI	CCGC	2 cut(s)	89, 92
AclWI	GGATC	1 cut(s)	226
AfaI	GTAC	2 cut(s)	185, 321
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	101
AluBI	AGCT	5 cut(s)	43, 77, 156, 251, 329
AluI	AGCT	5 cut(s)	43, 77, 156, 251, 329
AlwI	GGATC	1 cut(s)	226
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	245
BaeI	ACNNNNGTAYC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	6
BfuAI	ACCTGC	1 cut(s)	153
BisI	GCNGC	3 cut(s)	86, 89, 92
BlsI	GCNGC	3 cut(s)	87, 90, 93
Bme1390I	CCNGG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	196
Bpu10I	CCTNAGC	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	209
BshFI	GGCC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	218
BspACI	CCGC	2 cut(s)	89, 92
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	73
BspMI	ACCTGC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	226
BssMI	GATC	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	33, 183
BstDEI	CTNAG	1 cut(s)	81
BstKTI	GATC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	184, 320
CviJI	RGCY	8 cut(s)	5, 43, 77, 88, 156, 195, 251, 329
CviKI_1	RGCY	8 cut(s)	5, 43, 77, 88, 156, 195, 251, 329
CviQI	GTAC	2 cut(s)	184, 320
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
FaiI	YATR	6 cut(s)	39, 46, 109, 120, 289, 291
FaqI	GGGAC	1 cut(s)	118
Fnu4HI	GCNGC	3 cut(s)	86, 89, 92
Fsp4HI	GCNGC	3 cut(s)	86, 89, 92
GluI	GCNGC	3 cut(s)	86, 89, 92
GsaI	CCCAGC	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	179
HindII	GTYRAC	1 cut(s)	179
HindIII	AAGCTT	2 cut(s)	154, 327
HinfI	GANTC	1 cut(s)	240
HpaII	CCGG	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	2 cut(s)	33, 183
HpyCH4V	TGCA	3 cut(s)	61, 271, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpyF3I	CTNAG	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	218
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	6 cut(s)	93, 152, 158, 195, 257, 269
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	196
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	1 cut(s)	173
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	1 cut(s)	218
MluCI	AATT	1 cut(s)	96
MnlI	CCTC	1 cut(s)	33
MseI	TTAA	1 cut(s)	331
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	240
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	3 cut(s)	87, 90, 93
PsiI	TTATAA	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	194
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	2 cut(s)	185, 321
RsaNI	GTAC	2 cut(s)	184, 320
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	3 cut(s)	86, 89, 92
Sau3AI	GATC	1 cut(s)	218
Sau96I	GGNCC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	245
SetI	ASST	9 cut(s)	17, 25, 45, 79, 147, 158, 253, 288, 331
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	6
Sse9I	AATT	1 cut(s)	96
SsiI	CCGC	2 cut(s)	89, 92
SspI	AATATT	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	33, 183
TasI	AATT	1 cut(s)	96
TauI	GCSGC	2 cut(s)	91, 94
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TseI	GCWGC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.