Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0011614

Physical Location & Seq

Genomic Coordinates Forward (+)

21885667 .. 21885999

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG216300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCTGCAGCGACCTGCCGACCTCCACCACCGTATTATAAGCTATACAAAGATTACTTACAAGATCTCAAATCCGCTCCTGAGCCGCCGCCTTCAATTGAAGGGACATACGTTTGCTATGGTGCTAATTACACCGTAAGCTTTTCCTATTCTTTACCTTCTTCTCTACATTTATATACAGGCAAAGACTTCGGTGCGTTAATGCACCCATGCGTGATCTACGTGGCAAACAATTACTGGTACGCTTGGATAGTAGGCCCTGCAGGTGCAACTGGTTACCTGAAGATCCGGTCATCTGACCGTTTGGAGCATTTGAAATTCGAAACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

110

Amino Acids

12.4

Weight (kDa)

8.38

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478521
rosa_laevigata	RLG00000023641
rosa_multiflora	Rmu_sc0001262.1_g000010 Rmu_sc0008105.1_g000006
rosa_roxburghii	Rroxscaffold_6G00403490
rosa_rugosa	Rorug03G0165800 Rorug03G0166100
rosa_samantha	Rh3AG216300 Rh3AG216700 Rh3AG216800 Rh3AG216900 Rh3AG218000 Rh3AG256500 Rh3BG249500 Rh3CG245300 Rh3CG246900 Rh3CG291400 Rh3DG243400 Rh3DG296000 Rh7CG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
AarI	CACCTGC	1 cut(s)	254
Acc36I	ACCTGC	2 cut(s)	23, 254
AccBSI	CCGCTC	1 cut(s)	77
AciI	CCGC	3 cut(s)	75, 86, 89
AclWI	GGATC	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	302
AfaI	GTAC	1 cut(s)	242
AgsI	TTSAA	3 cut(s)	96, 101, 316
AluBI	AGCT	2 cut(s)	43, 141
AluI	AGCT	2 cut(s)	43, 141
AlwI	GGATC	1 cut(s)	280
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	2 cut(s)	5, 8
ApoI	RAATTY	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	257
AsuII	TTCGAA	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	20
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BfmI	CTRYAG	2 cut(s)	6, 261
BfuAI	ACCTGC	2 cut(s)	23, 254
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	4 cut(s)	6, 9, 86, 89
BlsI	GCNGC	4 cut(s)	7, 10, 87, 90
BmgT120I	GGNCC	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	321
BsaAI	YACGTR	1 cut(s)	223
BsaWI	WCCGGW	1 cut(s)	288
Bse1I	ACTGG	2 cut(s)	242, 277
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	2 cut(s)	242, 277
BseXI	GCAGC	1 cut(s)	20
BshFI	GGCC	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	289
BslFI	GGGAC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	258
Bsp119I	TTCGAA	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	64, 216, 285
BspACI	CCGC	3 cut(s)	75, 86, 89
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	1 cut(s)	73
BspMAI	CTGCAG	2 cut(s)	10, 265
BspMI	ACCTGC	2 cut(s)	23, 254
BspPI	GGATC	1 cut(s)	280
BspT104I	TTCGAA	1 cut(s)	321
BsrBI	CCGCTC	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	242, 277
BssMI	GATC	3 cut(s)	64, 216, 285
Bst4CI	ACNGT	3 cut(s)	33, 136, 302
BstBAI	YACGTR	1 cut(s)	223
BstBI	TTCGAA	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	81
BstEII	GGTNACC	1 cut(s)	275
BstKTI	GATC	3 cut(s)	67, 219, 288
BstMBI	GATC	3 cut(s)	64, 216, 285
BstPI	GGTNACC	1 cut(s)	275
BstSFI	CTRYAG	2 cut(s)	6, 261
BstV1I	GCAGC	1 cut(s)	20
BstX2I	RGATCY	2 cut(s)	64, 285
BstYI	RGATCY	2 cut(s)	64, 285
BsuRI	GGCC	1 cut(s)	258
BveI	ACCTGC	2 cut(s)	23, 254
Cfr13I	GGNCC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	1 cut(s)	210
CviJI	RGCY	5 cut(s)	5, 43, 85, 141, 258
CviKI_1	RGCY	5 cut(s)	5, 43, 85, 141, 258
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	3 cut(s)	66, 218, 287
DpnII	GATC	3 cut(s)	64, 216, 285
Eco57I	CTGAAG	1 cut(s)	302
Eco91I	GGTNACC	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	275
FaeI	CATG	1 cut(s)	213
FaiI	YATR	7 cut(s)	39, 46, 109, 120, 175, 177, 211
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	1 cut(s)	209
Fnu4HI	GCNGC	4 cut(s)	6, 9, 86, 89
Fsp4HI	GCNGC	4 cut(s)	6, 9, 86, 89
GluI	GCNGC	4 cut(s)	6, 9, 86, 89
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	1 cut(s)	289
Hin1II	CATG	1 cut(s)	213
HindIII	AAGCTT	1 cut(s)	139
HpaII	CCGG	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	95, 102, 168
HpyCH4III	ACNGT	3 cut(s)	33, 136, 302
HpyCH4IV	ACGT	2 cut(s)	111, 222
HpyCH4V	TGCA	4 cut(s)	8, 205, 263, 269
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	2 cut(s)	111, 222
Hsp92II	CATG	1 cut(s)	213
Kzo9I	GATC	3 cut(s)	64, 216, 285
LmnI	GCTCC	2 cut(s)	82, 307
LpnPI	CCDG	9 cut(s)	28, 93, 165, 223, 249, 258, 273, 293, 302
Lsp1109I	GCAGC	1 cut(s)	20
MaeII	ACGT	2 cut(s)	111, 222
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	3 cut(s)	66, 218, 287
MbiI	CCGCTC	1 cut(s)	77
MboI	GATC	3 cut(s)	64, 216, 285
MboII	GAAGA	2 cut(s)	153, 295
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	2 cut(s)	64, 285
MluCI	AATT	4 cut(s)	96, 127, 232, 317
MnlI	CCTC	1 cut(s)	33
MseI	TTAA	1 cut(s)	200
MspI	CCGG	1 cut(s)	289
MunI	CAATTG	1 cut(s)	96
NdeII	GATC	3 cut(s)	64, 216, 285
NlaIII	CATG	1 cut(s)	213
NspV	TTCGAA	1 cut(s)	321
PaqCI	CACCTGC	1 cut(s)	254
PkrI	GCNGC	4 cut(s)	7, 10, 87, 90
Ppu21I	YACGTR	1 cut(s)	223
PsiI	TTATAA	1 cut(s)	39
PspEI	GGTNACC	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	257
PstI	CTGCAG	2 cut(s)	10, 265
PsuI	RGATCY	2 cut(s)	64, 285
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	4 cut(s)	6, 9, 86, 89
Sau3AI	GATC	3 cut(s)	64, 216, 285
Sau96I	GGNCC	1 cut(s)	257
SbfI	CCTGCAGG	1 cut(s)	265
SdaI	CCTGCAGG	1 cut(s)	265
SetI	ASST	9 cut(s)	17, 25, 45, 114, 143, 160, 225, 268, 282
SfcI	CTRYAG	2 cut(s)	6, 261
SfuI	TTCGAA	1 cut(s)	321
Sse8387I	CCTGCAGG	1 cut(s)	265
Sse9I	AATT	4 cut(s)	96, 127, 232, 317
SsiI	CCGC	3 cut(s)	75, 86, 89
TaaI	ACNGT	3 cut(s)	33, 136, 302
TaiI	ACGT	2 cut(s)	114, 225
TaqI	TCGA	1 cut(s)	321
TasI	AATT	4 cut(s)	96, 127, 232, 317
TauI	GCSGC	2 cut(s)	88, 91
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TseI	GCWGC	2 cut(s)	5, 8
XapI	RAATTY	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.