Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0011614

Physical Location & Seq

Genomic Coordinates Reverse (-)

26415090 .. 26422231

Gene Structure 7142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023641

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAAAGAAGGAGGAGAACTCGAACTGACCGGCCATAAGTCGGAAGAGCAGCCCGTGCCTCGGCAGATTCCAAGGAATAGTTTAGTCCATCTTCGATTCTCCTCCAGCAAAAGACTAGGCTGGGCTTGGGTTCGACACTTGGATCAGTCTAGCTCCAAAACTTTGGCAACAAGGTGCTTGAAATGGCTACAGCGACCTATGTACCCACCTCCACCACCATATTATAAGCTATACAAAGATAATTTGCAAGATCCCAAATCCGCTCCTGAGCAGCCGCCACCAATTGAAGGGACATACATTTGCTATACAGATGACGTGCTTTCAAGCTTGGAAGAACATGGAGTGTGTCAACTGTACCCAAAAGGCCTAAATATTGCCGGGAATGATGCAGCCATACTAGCTATTGTTTATCCACGTGCTGCTTACATGCTGGGCAAGGATCTTTTGGTGGTTGTTTGGGATTCCGGGAAGCTCTTGGTTCTCTCTTTCTGCAACGAAATGCATAGATTTTTGCCTGTGACACACGGTCAACTTTCTAATCCTGGAAACTCAAGGAATCAGCTTGCAAGAATGCTAGCAATTGATTCAAGAGTCACTCTTCAACTGGTTTTGAGGCTGTGGGGAGGAACTATGATTAAGGTGAAGCCTCTTACTGGGAAAGAAATTGAGATTGATATTGAACCGACTGACACCATTGACCGAATCAAGGAAAGGGTTGAGGAGAAAGAGGAAATTCCTCTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

249

Amino Acids

28.15

Weight (kDa)

7.68

Isoelectric Point (pI)

57.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	141 - 197	1.2e-07	RSE1/DDB1/CPSF1 first beta-propeller
ubiquitin	PF00240	212 - 246	2e-06	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478521
rosa_laevigata	RLG00000023641
rosa_multiflora	Rmu_sc0001262.1_g000010 Rmu_sc0008105.1_g000006
rosa_roxburghii	Rroxscaffold_6G00403490
rosa_rugosa	Rorug03G0165800 Rorug03G0166100
rosa_samantha	Rh3AG216300 Rh3AG216700 Rh3AG216800 Rh3AG216900 Rh3AG218000 Rh3AG256500 Rh3BG249500 Rh3CG245300 Rh3CG246900 Rh3CG291400 Rh3DG243400 Rh3DG296000 Rh7CG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	225
AccBSI	CCGCTC	1 cut(s)	263
AciI	CCGC	2 cut(s)	261, 275
AclWI	GGATC	3 cut(s)	150, 245, 447
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	732
AcvI	CACGTG	1 cut(s)	416
AfaI	GTAC	2 cut(s)	203, 356
AfiI	CCNNNNNNNGG	5 cut(s)	40, 60, 287, 653, 706
AgsI	TTSAA	6 cut(s)	181, 287, 324, 588, 602, 680
AhdI	GACNNNNNGTC	1 cut(s)	525
AjiI	CACGTC	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	6 cut(s)	153, 229, 327, 401, 472, 562
AluI	AGCT	6 cut(s)	153, 229, 327, 401, 472, 562
AlwI	GGATC	3 cut(s)	150, 245, 447
AoxI	GGCC	2 cut(s)	31, 364
ApeKI	GCWGC	4 cut(s)	49, 271, 389, 419
ApoI	RAATTY	1 cut(s)	732
AsuC2I	CCSGG	2 cut(s)	379, 466
AsuHPI	GGTGA	1 cut(s)	652
AsuNHI	GCTAGC	1 cut(s)	574
BaeI	ACNNNNGTAYC	2 cut(s)	185, 218
BbrPI	CACGTG	1 cut(s)	416
BbvI	GCAGC	4 cut(s)	61, 283, 401, 406
BccI	CCATC	1 cut(s)	96
BciT130I	CCWGG	1 cut(s)	543
BcnI	CCSGG	2 cut(s)	379, 466
BfaI	CTAG	4 cut(s)	116, 150, 398, 575
BfmI	CTRYAG	1 cut(s)	188
BisI	GCNGC	5 cut(s)	50, 272, 275, 390, 420
BlsI	GCNGC	5 cut(s)	51, 273, 276, 391, 421
Bme1390I	CCNGG	3 cut(s)	379, 466, 543
BmeRI	GACNNNNNGTC	1 cut(s)	525
BmgBI	CACGTC	1 cut(s)	316
BmrFI	CCNGG	3 cut(s)	379, 466, 543
BmrI	ACTGGG	1 cut(s)	663
BmsI	GCATC	1 cut(s)	376
BmtI	GCTAGC	1 cut(s)	578
BmuI	ACTGGG	1 cut(s)	663
BplI	GAGNNNNNCTC	1 cut(s)	35
BpmI	CTGGAG	1 cut(s)	88
Bpu10I	CCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	535
BpuMI	CCSGG	2 cut(s)	379, 466
BsaAI	YACGTR	1 cut(s)	416
BsaJI	CCNNGG	2 cut(s)	59, 71
Bsc4I	CCNNNNNNNGG	5 cut(s)	40, 60, 287, 653, 706
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	609, 658
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	2 cut(s)	59, 71
BseLI	CCNNNNNNNGG	5 cut(s)	40, 60, 287, 653, 706
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	2 cut(s)	609, 658
BseRI	GAGGAG	3 cut(s)	27, 91, 734
BseXI	GCAGC	4 cut(s)	61, 283, 401, 406
BseYI	CCCAGC	2 cut(s)	120, 430
BshFI	GGCC	2 cut(s)	33, 366
BsiSI	CCGG	3 cut(s)	30, 378, 465
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	5 cut(s)	40, 60, 287, 653, 706
BsmFI	GGGAC	1 cut(s)	304
BsmI	GAATGC	1 cut(s)	576
BsnI	GGCC	2 cut(s)	33, 366
Bsp143I	GATC	3 cut(s)	142, 250, 439
BspACI	CCGC	2 cut(s)	261, 275
BspANI	GGCC	2 cut(s)	33, 366
BspCNI	CTCAG	1 cut(s)	259
BspOI	GCTAGC	1 cut(s)	578
BspPI	GGATC	3 cut(s)	150, 245, 447
BspQI	GCTCTTC	1 cut(s)	39
BsrBI	CCGCTC	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	609, 658
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	59, 71
BssMI	GATC	3 cut(s)	142, 250, 439
BssT1I	CCWWGG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	2 cut(s)	354, 527
Bst6I	CTCTTC	2 cut(s)	39, 603
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstBAI	YACGTR	1 cut(s)	416
BstC8I	GCNNGC	2 cut(s)	564, 576
BstDEI	CTNAG	1 cut(s)	267
BstKTI	GATC	3 cut(s)	145, 253, 442
BstMBI	GATC	3 cut(s)	142, 250, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 398
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	3 cut(s)	377, 464, 541
BstSFI	CTRYAG	1 cut(s)	188
BstV1I	GCAGC	4 cut(s)	61, 283, 401, 406
BstX2I	RGATCY	2 cut(s)	250, 439
BstXI	CCANNNNNNTGG	1 cut(s)	163
BstYI	RGATCY	2 cut(s)	250, 439
BsuRI	GGCC	2 cut(s)	33, 366
BtrI	CACGTC	1 cut(s)	316
Cac8I	GCNNGC	2 cut(s)	564, 576
Cfr10I	RCCGGY	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	202, 355
CviAII	CATG	2 cut(s)	338, 427
CviQI	GTAC	2 cut(s)	202, 355
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	3 cut(s)	144, 252, 441
DpnII	GATC	3 cut(s)	142, 250, 439
DriI	GACNNNNNGTC	1 cut(s)	525
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	2 cut(s)	39, 603
Eam1105I	GACNNNNNGTC	1 cut(s)	525
EarI	CTCTTC	2 cut(s)	39, 603
Eco130I	CCWWGG	1 cut(s)	71
Eco147I	AGGCCT	1 cut(s)	366
Eco72I	CACGTG	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	71
EcoT22I	ATGCAT	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	2 cut(s)	341, 430
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	2 cut(s)	337, 426
Fnu4HI	GCNGC	5 cut(s)	50, 272, 275, 390, 420
Fsp4HI	GCNGC	5 cut(s)	50, 272, 275, 390, 420
FspBI	CTAG	4 cut(s)	116, 150, 398, 575
GluI	GCNGC	5 cut(s)	50, 272, 275, 390, 420
GsaI	CCCAGC	2 cut(s)	124, 434
GsuI	CTGGAG	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	33, 366
HapII	CCGG	3 cut(s)	30, 378, 465
Hin1II	CATG	2 cut(s)	341, 430
HincII	GTYRAC	2 cut(s)	350, 530
HindII	GTYRAC	2 cut(s)	350, 530
HindIII	AAGCTT	1 cut(s)	325
HinfI	GANTC	7 cut(s)	67, 96, 461, 556, 584, 591, 702
HpaII	CCGG	3 cut(s)	30, 378, 465
HphI	GGTGA	1 cut(s)	652
Hpy166II	GTNNAC	2 cut(s)	350, 530
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	2 cut(s)	266, 588
Hpy8I	GTNNAC	2 cut(s)	350, 530
HpyAV	CCTTC	1 cut(s)	281
HpyCH4III	ACNGT	2 cut(s)	354, 527
HpyCH4IV	ACGT	2 cut(s)	315, 415
HpyCH4V	TGCA	5 cut(s)	247, 389, 492, 502, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 398
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	2 cut(s)	315, 415
Hsp92II	CATG	2 cut(s)	341, 430
Kzo9I	GATC	3 cut(s)	142, 250, 439
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	2 cut(s)	158, 268
Lsp1109I	GCAGC	4 cut(s)	61, 283, 401, 406
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	4 cut(s)	116, 150, 398, 575
MaeII	ACGT	2 cut(s)	315, 415
MaeIII	GTNAC	2 cut(s)	517, 592
MalI	GATC	3 cut(s)	144, 252, 441
MbiI	CCGCTC	1 cut(s)	263
MboI	GATC	3 cut(s)	142, 250, 439
MboII	GAAGA	4 cut(s)	56, 83, 344, 590
MfeI	CAATTG	2 cut(s)	282, 579
MflI	RGATCY	2 cut(s)	250, 439
MluCI	AATT	5 cut(s)	241, 282, 579, 663, 732
MlyI	GAGTC	1 cut(s)	600
MmeI	TCCRAC	1 cut(s)	21
Mph1103I	ATGCAT	1 cut(s)	504
MseI	TTAA	1 cut(s)	636
MspI	CCGG	3 cut(s)	30, 378, 465
MspR9I	CCNGG	3 cut(s)	379, 466, 543
MunI	CAATTG	2 cut(s)	282, 579
Mva1269I	GAATGC	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	543
MwoI	GCNNNNNNNGC	2 cut(s)	55, 398
NciI	CCSGG	2 cut(s)	379, 466
NdeII	GATC	3 cut(s)	142, 250, 439
NheI	GCTAGC	1 cut(s)	574
NlaIII	CATG	2 cut(s)	341, 430
NmeAIII	GCCGAG	1 cut(s)	40
NmuCI	GTSAC	2 cut(s)	517, 592
NsiI	ATGCAT	1 cut(s)	504
NspI	RCATGY	1 cut(s)	430
PceI	AGGCCT	1 cut(s)	366
PciSI	GCTCTTC	1 cut(s)	39
PctI	GAATGC	1 cut(s)	576
PfeI	GAWTC	6 cut(s)	67, 96, 461, 556, 584, 702
PfoI	TCCNGGA	2 cut(s)	464, 541
PkrI	GCNGC	5 cut(s)	51, 273, 276, 391, 421
PleI	GAGTC	1 cut(s)	599
PmaCI	CACGTG	1 cut(s)	416
PmlI	CACGTG	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	599
Ppu21I	YACGTR	1 cut(s)	416
PsiI	TTATAA	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	541
PspCI	CACGTG	1 cut(s)	416
PspFI	CCCAGC	2 cut(s)	120, 430
PspGI	CCWGG	1 cut(s)	541
PsuI	RGATCY	2 cut(s)	250, 439
RsaI	GTAC	2 cut(s)	203, 356
RsaNI	GTAC	2 cut(s)	202, 355
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	5 cut(s)	50, 272, 275, 390, 420
Sau3AI	GATC	3 cut(s)	142, 250, 439
SchI	GAGTC	1 cut(s)	600
ScrFI	CCNGG	3 cut(s)	379, 466, 543
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
Sse9I	AATT	5 cut(s)	241, 282, 579, 663, 732
SseBI	AGGCCT	1 cut(s)	366
SsiI	CCGC	2 cut(s)	261, 275
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	4 cut(s)	116, 150, 398, 575
StuI	AGGCCT	1 cut(s)	366
StyD4I	CCNGG	3 cut(s)	377, 464, 541
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	2 cut(s)	354, 527
TaiI	ACGT	2 cut(s)	318, 418
TaqI	TCGA	3 cut(s)	21, 94, 133
TaqII	GACCGA	1 cut(s)	714
TasI	AATT	5 cut(s)	241, 282, 579, 663, 732
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	6 cut(s)	67, 96, 461, 556, 584, 702
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TseFI	GTSAC	2 cut(s)	517, 592
TseI	GCWGC	4 cut(s)	49, 271, 389, 419
Tsp45I	GTSAC	2 cut(s)	517, 592
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	732
XceI	RCATGY	1 cut(s)	430
XspI	CTAG	4 cut(s)	116, 150, 398, 575
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.