Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0011614

Physical Location & Seq

Genomic Coordinates Reverse (-)

30783752 .. 30799643

Gene Structure 15892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG296000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCTCGGCAAAGATCTTTTGGTGGTTGTATCTGATTCCGGGAAGCTCTCGGTTCTCTCTTTGTGCAACGAAATGCACAGATGGCGCTCAACCCCTTTGCCTAGAGGACAATTGCTCTTAAAGCTGTCGAGCAGTACGGCTGAGGACTGGGCTGCCCAGGCGGATCCCTTTCGGGCTCCAACAATTTCTTCTCCTGAGCTTCATGTCTGCATACTTGAGGGAGAATATACAGCAGCTATACTTGAAGACTACTACGTGGTGAGCGATGCAGCTCGTACGCGATCAGTGTTTAAACCACATGGAATGCTGAGTTGGAGATACCAAGCAGGGGGTTGCAATACCGAGTTGGAGATGCCGAGTGGCCTAAAGTGCCGCAATACCAAGTGGAGGGTTGCAATACCGAGTTGGGGATACCGAGAGCATTCTAAGATAGACAAGAGTCGCGATACCGAGTGGTATGTGGCGAGAGCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

158

Amino Acids

17.88

Weight (kDa)

8.35

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478521
rosa_laevigata	RLG00000023641
rosa_multiflora	Rmu_sc0001262.1_g000010 Rmu_sc0008105.1_g000006
rosa_roxburghii	Rroxscaffold_6G00403490
rosa_rugosa	Rorug03G0165800 Rorug03G0166100
rosa_samantha	Rh3AG216300 Rh3AG216700 Rh3AG216800 Rh3AG216900 Rh3AG218000 Rh3AG256500 Rh3BG249500 Rh3CG245300 Rh3CG246900 Rh3CG291400 Rh3DG243400 Rh3DG296000 Rh7CG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	280, 444
AciI	CCGC	2 cut(s)	161, 373
AclWI	GGATC	2 cut(s)	158, 171
AfaI	GTAC	2 cut(s)	136, 277
AfiI	CCNNNNNNNGG	3 cut(s)	328, 387, 407
AgsI	TTSAA	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	156
AjuI	GAANNNNNNNTTGG	4 cut(s)	172, 204, 295, 327
AluBI	AGCT	5 cut(s)	46, 124, 199, 236, 272
AluI	AGCT	5 cut(s)	46, 124, 199, 236, 272
AlwI	GGATC	2 cut(s)	158, 171
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	3 cut(s)	152, 233, 269
AspLEI	GCGC	1 cut(s)	87
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	271
BamHI	GGATCC	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	139, 245, 281
BccI	CCATC	1 cut(s)	75
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	158
BciVI	GTATCC	1 cut(s)	404
BcnI	CCSGG	1 cut(s)	40
BfaI	CTAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	88
BfuI	GTATCC	1 cut(s)	404
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	4 cut(s)	153, 234, 270, 373
BlsI	GCNGC	4 cut(s)	154, 235, 271, 374
Bme1390I	CCNGG	2 cut(s)	40, 158
BmiI	GGNNCC	2 cut(s)	165, 177
BmrFI	CCNGG	2 cut(s)	40, 158
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	2 cut(s)	256, 342
BmuI	ACTGGG	1 cut(s)	157
BoxI	GACNNNNGTC	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	252
Bpu10I	CCTNAGC	2 cut(s)	141, 195
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	40
BsaAI	YACGTR	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	3 cut(s)	328, 387, 407
Bse1I	ACTGG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	156
BseLI	CCNNNNNNNGG	3 cut(s)	328, 387, 407
BseMII	CTCAG	3 cut(s)	132, 186, 299
BseNI	ACTGG	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	139, 245, 281
Bsh1236I	CGCG	2 cut(s)	280, 444
BshFI	GGCC	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	39
BsiWI	CGTACG	1 cut(s)	275
BslI	CCNNNNNNNGG	3 cut(s)	328, 387, 407
BsmI	GAATGC	2 cut(s)	309, 421
BsnI	GGCC	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	3 cut(s)	13, 163, 281
Bsp68I	TCGCGA	1 cut(s)	444
BspACI	CCGC	2 cut(s)	161, 373
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	3 cut(s)	133, 187, 300
BspFNI	CGCG	2 cut(s)	280, 444
BspLI	GGNNCC	2 cut(s)	165, 177
BspPI	GGATC	2 cut(s)	158, 171
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	3 cut(s)	13, 163, 281
Bst2UI	CCWGG	1 cut(s)	158
BstBAI	YACGTR	1 cut(s)	256
BstDEI	CTNAG	4 cut(s)	141, 195, 308, 426
BstFNI	CGCG	2 cut(s)	280, 444
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	3 cut(s)	16, 166, 284
BstMBI	GATC	3 cut(s)	13, 163, 281
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 121, 158, 369
BstNI	CCWGG	1 cut(s)	158
BstPAI	GACNNNNGTC	1 cut(s)	438
BstSCI	CCNGG	2 cut(s)	38, 156
BstUI	CGCG	2 cut(s)	280, 444
BstV1I	GCAGC	3 cut(s)	139, 245, 281
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	2 cut(s)	13, 163
BstYI	RGATCY	2 cut(s)	13, 163
BsuI	GTATCC	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	363
BtgZI	GCGATG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	291
BtuMI	TCGCGA	1 cut(s)	444
CfoI	GCGC	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	135, 276
CviAII	CATG	2 cut(s)	203, 299
CviJI	RGCY	9 cut(s)	46, 124, 140, 152, 176, 199, 236, 272, 363
CviKI_1	RGCY	9 cut(s)	46, 124, 140, 152, 176, 199, 236, 272, 363
CviQI	GTAC	2 cut(s)	135, 276
DdeI	CTNAG	4 cut(s)	141, 195, 308, 426
DpnI	GATC	3 cut(s)	15, 165, 283
DpnII	GATC	3 cut(s)	13, 163, 281
DraI	TTTAAA	1 cut(s)	292
EciI	GGCGGA	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	2 cut(s)	206, 302
FaiI	YATR	7 cut(s)	204, 212, 228, 239, 300, 459, 472
FatI	CATG	2 cut(s)	202, 298
Fnu4HI	GCNGC	4 cut(s)	153, 234, 270, 373
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	4 cut(s)	153, 234, 270, 373
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	4 cut(s)	153, 234, 270, 373
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	363
HapII	CCGG	1 cut(s)	39
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	206, 302
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	35, 439
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	194, 443
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	6 cut(s)	66, 76, 210, 269, 336, 395
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 121, 158, 369
HpyF3I	CTNAG	4 cut(s)	141, 195, 308, 426
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	206, 302
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	13, 163, 281
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	6 cut(s)	52, 133, 143, 170, 207, 312
Lsp1109I	GCAGC	3 cut(s)	139, 245, 281
LweI	GCATC	2 cut(s)	256, 342
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	255
MalI	GATC	3 cut(s)	15, 165, 283
MboI	GATC	3 cut(s)	13, 163, 281
MboII	GAAGA	2 cut(s)	180, 257
MfeI	CAATTG	1 cut(s)	110
MflI	RGATCY	2 cut(s)	13, 163
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	2 cut(s)	110, 183
MlyI	GAGTC	1 cut(s)	448
MmeI	TCCRAC	3 cut(s)	203, 293, 327
MnlI	CCTC	4 cut(s)	98, 136, 211, 381
MseI	TTAA	3 cut(s)	119, 291, 475
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	2 cut(s)	40, 158
MssI	GTTTAAAC	1 cut(s)	292
MunI	CAATTG	1 cut(s)	110
Mva1269I	GAATGC	2 cut(s)	309, 421
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	2 cut(s)	280, 444
MwoI	GCNNNNNNNGC	4 cut(s)	82, 121, 158, 369
NciI	CCSGG	1 cut(s)	40
NdeII	GATC	3 cut(s)	13, 163, 281
NlaIII	CATG	2 cut(s)	206, 302
NlaIV	GGNNCC	2 cut(s)	165, 177
NmeAIII	GCCGAG	1 cut(s)	381
NruI	TCGCGA	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PctI	GAATGC	2 cut(s)	309, 421
PfeI	GAWTC	1 cut(s)	35
Pfl23II	CGTACG	1 cut(s)	275
PfoI	TCCNGGA	1 cut(s)	38
PkrI	GCNGC	4 cut(s)	154, 235, 271, 374
PleI	GAGTC	1 cut(s)	447
PmeI	GTTTAAAC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	447
Ppu21I	YACGTR	1 cut(s)	256
PshAI	GACNNNNGTC	1 cut(s)	438
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspLI	CGTACG	1 cut(s)	275
PspN4I	GGNNCC	2 cut(s)	165, 177
PsuI	RGATCY	2 cut(s)	13, 163
RruI	TCGCGA	1 cut(s)	444
RsaI	GTAC	2 cut(s)	136, 277
RsaNI	GTAC	2 cut(s)	135, 276
SaqAI	TTAA	3 cut(s)	119, 291, 475
SatI	GCNGC	4 cut(s)	153, 234, 270, 373
Sau3AI	GATC	3 cut(s)	13, 163, 281
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	2 cut(s)	40, 158
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	6 cut(s)	48, 126, 201, 238, 258, 274
SfaNI	GCATC	2 cut(s)	256, 342
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	110, 183
SsiI	CCGC	2 cut(s)	161, 373
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	2 cut(s)	38, 156
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	128
TasI	AATT	2 cut(s)	110, 183
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	3 cut(s)	119, 291, 475
Tru9I	TTAA	3 cut(s)	119, 291, 475
TscAI	CASTG	1 cut(s)	291
TseI	GCWGC	3 cut(s)	152, 233, 269
TspDTI	ATGAA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	291
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.