Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008105.1

Orthogroup ID

OG0011614

Physical Location & Seq

Genomic Coordinates Forward (+)

31224 .. 35330

Gene Structure 4107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008105.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggggacggggacagagaatccccagtttattattacggggattgaggcggataaggggatgtggaatgaagtcgggtatgaggatgatcaagaattgatgagtgatgttggttcttgtccggccagatttagtgccactgttaatgctgctcctagtgcagctgctaataccgagaataagaatagagaagaacaagctccaatgtggcaatttggtggctttcattttttttttggtgtcaaagcggtggttttgcttgtcaagatggatatgctacttgaacaaacagcgtttggcaacaaggtgcttgaaatggctacagacacctacccacctccaccaccgtattataagctatacagagattacttgcaagatcccaaatccgctcctgagccgctgccaccaattgaagggacatacgtttgctatggtgctaattacactacggatgacgtgcttccaaggttggaagaactgggggtgcgtcaactgtacccaaaaggcccaaataatgatcatcctcgtcctccacctccagcagctttcactacctctccaaggtgcctcctccgtggcaccgccattcttcaggtcctaaacggtcacatccgcttccccaactcccacgacattgtttttggcaaggttcacccccttctctctccccgttctccttttagttctgattttagtggaattagaaacagtgatgatccgatatgtgattcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

245

Amino Acids

27.13

Weight (kDa)

4.93

Isoelectric Point (pI)

51.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478521
rosa_laevigata	RLG00000023641
rosa_multiflora	Rmu_sc0001262.1_g000010 Rmu_sc0008105.1_g000006
rosa_roxburghii	Rroxscaffold_6G00403490
rosa_rugosa	Rorug03G0165800 Rorug03G0166100
rosa_samantha	Rh3AG216300 Rh3AG216700 Rh3AG216800 Rh3AG216900 Rh3AG218000 Rh3AG256500 Rh3BG249500 Rh3CG245300 Rh3CG246900 Rh3CG291400 Rh3DG243400 Rh3DG296000 Rh7CG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	354
AccB1I	GGYRCC	2 cut(s)	567, 581
AccBSI	CCGCTC	1 cut(s)	392
AciI	CCGC	6 cut(s)	50, 248, 390, 401, 585, 616
AclWI	GGATC	2 cut(s)	374, 713
AcoI	YGGCCR	1 cut(s)	123
AcuI	CTGAAG	1 cut(s)	578
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	416, 564
AgsI	TTSAA	3 cut(s)	284, 314, 416
AjiI	CACGTC	1 cut(s)	460
AluBI	AGCT	4 cut(s)	164, 200, 358, 548
AluI	AGCT	4 cut(s)	164, 200, 358, 548
AlwI	GGATC	2 cut(s)	374, 713
AoxI	GGCC	2 cut(s)	123, 508
ApeKI	GCWGC	5 cut(s)	149, 161, 164, 403, 545
ArsI	GACNNNNNNTTYG	2 cut(s)	626, 658
AspS9I	GGNCC	2 cut(s)	509, 598
AsuHPI	GGTGA	1 cut(s)	647
AvaII	GGWCC	1 cut(s)	598
BanI	GGYRCC	2 cut(s)	567, 581
BbvI	GCAGC	5 cut(s)	136, 151, 173, 390, 557
BccI	CCATC	1 cut(s)	262
BclI	TGATCA	2 cut(s)	88, 520
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	6 cut(s)	150, 162, 165, 401, 404, 546
BlsI	GCNGC	6 cut(s)	151, 163, 166, 402, 405, 547
Bme18I	GGWCC	1 cut(s)	598
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	509, 598
BmiI	GGNNCC	2 cut(s)	569, 583
BmrI	ACTGGG	2 cut(s)	19, 491
BmuI	ACTGGG	2 cut(s)	19, 491
BpmI	CTGGAG	1 cut(s)	525
Bpu10I	CCTNAGC	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	467, 563, 577
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 564
Bse1I	ACTGG	2 cut(s)	25, 486
BseDI	CCNNGG	3 cut(s)	467, 563, 577
BseGI	GGATG	5 cut(s)	66, 91, 460, 523, 612
BseLI	CCNNNNNNNGG	2 cut(s)	416, 564
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	2 cut(s)	25, 486
BseRI	GAGGAG	1 cut(s)	563
BseXI	GCAGC	5 cut(s)	136, 151, 173, 390, 557
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	2 cut(s)	125, 510
BshNI	GGYRCC	2 cut(s)	567, 581
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	3 cut(s)	19, 25, 433
BslI	CCNNNNNNNGG	2 cut(s)	416, 564
BsmFI	GGGAC	3 cut(s)	19, 25, 433
BsnI	GGCC	2 cut(s)	125, 510
Bsp143I	GATC	4 cut(s)	88, 379, 520, 718
BspACI	CCGC	6 cut(s)	50, 248, 390, 401, 585, 616
BspANI	GGCC	2 cut(s)	125, 510
BspCNI	CTCAG	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	569, 583
BspPI	GGATC	2 cut(s)	374, 713
BspT107I	GGYRCC	2 cut(s)	567, 581
BsrBI	CCGCTC	1 cut(s)	392
BsrI	ACTGG	2 cut(s)	25, 486
BssECI	CCNNGG	3 cut(s)	467, 563, 577
BssMI	GATC	4 cut(s)	88, 379, 520, 718
BssT1I	CCWWGG	2 cut(s)	467, 563
Bst4CI	ACNGT	5 cut(s)	142, 348, 498, 608, 713
BstDEI	CTNAG	1 cut(s)	396
BstDSI	CCRYGG	1 cut(s)	577
BstENI	CCTNNNNNAGG	1 cut(s)	562
BstF5I	GGATG	5 cut(s)	66, 91, 460, 523, 612
BstKTI	GATC	4 cut(s)	91, 382, 523, 721
BstMBI	GATC	4 cut(s)	88, 379, 520, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	5 cut(s)	136, 151, 173, 390, 557
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	125, 510
BtgI	CCRYGG	1 cut(s)	577
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	5 cut(s)	66, 91, 460, 523, 612
BtsIMutI	CAGTG	2 cut(s)	138, 718
Cfr13I	GGNCC	2 cut(s)	509, 598
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	499
CviJI	RGCY	9 cut(s)	125, 164, 200, 222, 320, 358, 400, 510, 548
CviKI_1	RGCY	9 cut(s)	125, 164, 200, 222, 320, 358, 400, 510, 548
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	4 cut(s)	90, 381, 522, 720
DpnII	GATC	4 cut(s)	88, 379, 520, 718
EaeI	YGGCCR	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	467, 563
Eco47I	GGWCC	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	578
EcoNI	CCTNNNNNAGG	1 cut(s)	562
EcoO109I	RGGNCCY	1 cut(s)	598
EcoT14I	CCWWGG	2 cut(s)	467, 563
ErhI	CCWWGG	2 cut(s)	467, 563
FaiI	YATR	7 cut(s)	81, 275, 354, 361, 424, 435, 727
FaqI	GGGAC	3 cut(s)	19, 25, 433
FbaI	TGATCA	2 cut(s)	88, 520
Fnu4HI	GCNGC	6 cut(s)	150, 162, 165, 401, 404, 546
FokI	GGATG	5 cut(s)	73, 98, 467, 510, 599
Fsp4HI	GCNGC	6 cut(s)	150, 162, 165, 401, 404, 546
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	6 cut(s)	150, 162, 165, 401, 404, 546
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	2 cut(s)	125, 510
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	479
HincII	GTYRAC	1 cut(s)	494
HindII	GTYRAC	1 cut(s)	494
HinfI	GANTC	2 cut(s)	19, 731
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	647
Hpy166II	GTNNAC	2 cut(s)	494, 655
Hpy188I	TCNGA	2 cut(s)	691, 723
Hpy188III	TCNNGA	4 cut(s)	92, 265, 395, 735
Hpy8I	GTNNAC	2 cut(s)	494, 655
HpyAV	CCTTC	2 cut(s)	410, 671
HpyCH4III	ACNGT	5 cut(s)	142, 348, 498, 608, 713
HpyCH4IV	ACGT	2 cut(s)	426, 459
HpyCH4V	TGCA	2 cut(s)	161, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	2 cut(s)	426, 459
Ksp22I	TGATCA	2 cut(s)	88, 520
Kzo9I	GATC	4 cut(s)	88, 379, 520, 718
LmnI	GCTCC	3 cut(s)	157, 205, 397
LpnPI	CCDG	7 cut(s)	38, 135, 139, 408, 467, 555, 581
Lsp1109I	GCAGC	5 cut(s)	136, 151, 173, 390, 557
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	2 cut(s)	426, 459
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	4 cut(s)	90, 381, 522, 720
MbiI	CCGCTC	1 cut(s)	392
MboI	GATC	4 cut(s)	88, 379, 520, 718
MboII	GAAGA	3 cut(s)	203, 488, 584
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	1 cut(s)	379
MluCI	AATT	5 cut(s)	95, 212, 411, 442, 702
MmeI	TCCRAC	1 cut(s)	453
MnlI	CCTC	9 cut(s)	40, 76, 348, 537, 543, 549, 568, 581, 584
MseI	TTAA	1 cut(s)	144
MspA1I	CMGCKG	2 cut(s)	164, 403
MspI	CCGG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	411
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	4 cut(s)	88, 379, 520, 718
NlaIV	GGNNCC	2 cut(s)	569, 583
NmuCI	GTSAC	1 cut(s)	608
PfeI	GAWTC	2 cut(s)	19, 731
PkrI	GCNGC	6 cut(s)	151, 163, 166, 402, 405, 547
PpuMI	RGGWCCY	1 cut(s)	598
PsiI	TTATAA	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	598
PspN4I	GGNNCC	2 cut(s)	569, 583
PspPI	GGNCC	2 cut(s)	509, 598
PspPPI	RGGWCCY	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	6 cut(s)	150, 162, 165, 401, 404, 546
Sau3AI	GATC	4 cut(s)	88, 379, 520, 718
Sau96I	GGNCC	2 cut(s)	509, 598
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	1 cut(s)	598
Sse9I	AATT	5 cut(s)	95, 212, 411, 442, 702
SsiI	CCGC	6 cut(s)	50, 248, 390, 401, 585, 616
SspMI	CTAG	1 cut(s)	156
StyI	CCWWGG	2 cut(s)	467, 563
TaaI	ACNGT	5 cut(s)	142, 348, 498, 608, 713
TaiI	ACGT	2 cut(s)	429, 462
TasI	AATT	5 cut(s)	95, 212, 411, 442, 702
TauI	GCSGC	1 cut(s)	403
TfiI	GAWTC	2 cut(s)	19, 731
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	2 cut(s)	145, 718
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	5 cut(s)	149, 161, 164, 403, 545
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	2 cut(s)	84, 215
TspGWI	ACGGA	2 cut(s)	467, 566
TspRI	CASTG	2 cut(s)	145, 718
VpaK11BI	GGWCC	1 cut(s)	598
XagI	CCTNNNNNAGG	1 cut(s)	562
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.