Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0011614

Physical Location & Seq

Genomic Coordinates Reverse (-)

21962265 .. 21962938

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG216800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCTACAGTGACCTACCCACCTCCACCACCGTATTATAAGCTATACAAAGATTACTTGCAAGATCCCAAATCTGCTCCTGAGCCGTCGCCTCCAATTGAAGGGACATGCGTCTGCTATGGTGCTAATTACGCCACGGATGACGTGCTTCCAAGCTTGGAAGAACAGGGAGCGCGTCAACTGTACCCAAAAGGCCCAAATATTGGTATGTCTACCTCCGGGCTAGTTCAACCGTTCTCTTCTTTCTTTCTTTATTTGCTTTTTGTTATTGTTTTGTTTAAGAAGAAAGAATCTTTATTAAGACAAAAGCTTAGTGTACATGCAGTGGACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

111

Amino Acids

12.41

Weight (kDa)

7.7

Isoelectric Point (pI)

61.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	5 - 65	1.4e-06	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478521
rosa_laevigata	RLG00000023641
rosa_multiflora	Rmu_sc0001262.1_g000010 Rmu_sc0008105.1_g000006
rosa_roxburghii	Rroxscaffold_6G00403490
rosa_rugosa	Rorug03G0165800 Rorug03G0166100
rosa_samantha	Rh3AG216300 Rh3AG216700 Rh3AG216800 Rh3AG216900 Rh3AG218000 Rh3AG256500 Rh3BG249500 Rh3CG245300 Rh3CG246900 Rh3CG291400 Rh3DG243400 Rh3DG296000 Rh7CG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
AccB7I	CCANNNNNTGG	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	212
AccII	CGCG	1 cut(s)	175
AclWI	GGATC	1 cut(s)	59
AfaI	GTAC	2 cut(s)	185, 318
AfiI	CCNNNNNNNGG	2 cut(s)	101, 203
AgsI	TTSAA	2 cut(s)	101, 230
AjiI	CACGTC	1 cut(s)	145
AluBI	AGCT	3 cut(s)	43, 156, 310
AluI	AGCT	3 cut(s)	43, 156, 310
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	1 cut(s)	193
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	220
BceAI	ACGGC	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	220
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	220
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	220
BoxI	GACNNNNGTC	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 203
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	2 cut(s)	101, 203
BseMII	CTCAG	1 cut(s)	72
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	101, 203
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	195
Bsp1407I	TGTACA	1 cut(s)	316
Bsp143I	GATC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	175
BspPI	GGATC	1 cut(s)	59
BsrGI	TGTACA	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	64
Bst4CI	ACNGT	4 cut(s)	10, 33, 183, 234
Bst6I	CTCTTC	1 cut(s)	244
BstAUI	TGTACA	1 cut(s)	316
BstDEI	CTNAG	2 cut(s)	81, 311
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNSI	RCATGY	2 cut(s)	111, 323
BstPAI	GACNNNNGTC	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	195
BtgI	CCRYGG	1 cut(s)	135
BtrI	CACGTC	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	15, 330
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	194
CseI	GACGC	2 cut(s)	100, 164
Csp6I	GTAC	2 cut(s)	184, 317
CviAII	CATG	2 cut(s)	108, 320
CviJI	RGCY	7 cut(s)	5, 43, 85, 156, 195, 223, 310
CviKI_1	RGCY	7 cut(s)	5, 43, 85, 156, 195, 223, 310
CviQI	GTAC	2 cut(s)	184, 317
DdeI	CTNAG	2 cut(s)	81, 311
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
FaeI	CATG	2 cut(s)	111, 323
FaiI	YATR	6 cut(s)	39, 46, 109, 120, 209, 321
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	2 cut(s)	107, 319
FblI	GTMKAC	1 cut(s)	212
FokI	GGATG	1 cut(s)	152
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	1 cut(s)	219
HgaI	GACGC	2 cut(s)	100, 164
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	2 cut(s)	111, 323
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	179
HindII	GTYRAC	1 cut(s)	179
HindIII	AAGCTT	2 cut(s)	154, 308
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	1 cut(s)	219
Hpy166II	GTNNAC	4 cut(s)	179, 213, 317, 328
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	4 cut(s)	179, 213, 317, 328
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	4 cut(s)	10, 33, 183, 234
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	61, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	2 cut(s)	81, 311
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	111, 323
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	2 cut(s)	82, 170
LpnPI	CCDG	3 cut(s)	93, 152, 232
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	3 cut(s)	173, 231, 295
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	2 cut(s)	96, 127
MnlI	CCTC	3 cut(s)	33, 102, 226
MseI	TTAA	2 cut(s)	279, 299
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	220
MunI	CAATTG	1 cut(s)	96
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	1 cut(s)	131
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	2 cut(s)	111, 323
NmuCI	GTSAC	1 cut(s)	10
NspI	RCATGY	2 cut(s)	111, 323
PfeI	GAWTC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	203
PshAI	GACNNNNGTC	1 cut(s)	110
PsiI	TTATAA	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	2 cut(s)	185, 318
RsaNI	GTAC	2 cut(s)	184, 317
SaqAI	TTAA	2 cut(s)	279, 299
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	7 cut(s)	17, 25, 45, 147, 158, 218, 312
SfcI	CTRYAG	1 cut(s)	6
Sse9I	AATT	2 cut(s)	96, 127
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	218
TaaI	ACNGT	4 cut(s)	10, 33, 183, 234
TaiI	ACGT	1 cut(s)	147
TasI	AATT	2 cut(s)	96, 127
TatI	WGTACW	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	279, 299
Tru9I	TTAA	2 cut(s)	279, 299
TscAI	CASTG	2 cut(s)	15, 330
TseFI	GTSAC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	2 cut(s)	15, 330
Van91I	CCANNNNNTGG	1 cut(s)	203
XceI	RCATGY	2 cut(s)	111, 323
XmiI	GTMKAC	1 cut(s)	212
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.