Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0011614

Physical Location & Seq

Genomic Coordinates Forward (+)

23777864 .. 23820414

Gene Structure 42551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG249500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAAACCAGATTGTATTCCTTCCGGCAGCGAATCCTTGAGAGTATTTCAGATTGCTCAAGATTTAAAGGATCATGTGGCAATGCCAACTTCTAGTGAAACTGCAACTTGCTCAAGAGCCCAAAACCGCCGGAAAGCAGTATGCCCAAAAGGCCCTTCGTTGTACAAAGCAGGTACAAGAAGTAAAATACATACCCGTCGTTGGCTTGGAGCCTTCGACATAAGCAATCAACCATGTTCCTCTCTCTCTCATTTCCCTATTTCTGAGACCAACAACCAAACTGGGTTTGGCAACAAGGTGCTTGAAATGGCTACAGCGACCTGCCAACCTCCACCGCCGTATTATAAGCTATACAAAGATTACTTACAAGATCTCAAATCCGCTCCTGAGCCGCCGCCTTCAATTGAAGGGACATACGTTTGCTATGGTGCTAATTACACCACGGGTGACGTCTTCCAAGCTTGGAAGAACAGGGAGTGTGTCAACTGTACCCAAAAGGCCCAAATTGGCACGTCTACCTCCGGGCTAGCTAGGGCAACACTAATTCACATTCTAGAACATCATATAAAACGACGTAAACAAGCTGTTGAGGATTTAAAGAGACAATTAAAAGGGTGCTGGCATGGTGACTTGGTGTTGTCCATTTCCCGATGGATGCAACATTGTAGTAATCTGGATTCTGGAAAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

230

Amino Acids

25.73

Weight (kDa)

9.31

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478521
rosa_laevigata	RLG00000023641
rosa_multiflora	Rmu_sc0001262.1_g000010 Rmu_sc0008105.1_g000006
rosa_roxburghii	Rroxscaffold_6G00403490
rosa_rugosa	Rorug03G0165800 Rorug03G0166100
rosa_samantha	Rh3AG216300 Rh3AG216700 Rh3AG216800 Rh3AG216900 Rh3AG218000 Rh3AG256500 Rh3BG249500 Rh3CG245300 Rh3CG246900 Rh3CG291400 Rh3DG243400 Rh3DG296000 Rh7CG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AatII	GACGTC	1 cut(s)	453
Acc36I	ACCTGC	2 cut(s)	161, 329
AccBSI	CCGCTC	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	515
AciI	CCGC	5 cut(s)	127, 335, 381, 392, 395
AclWI	GGATC	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	450
AfaI	GTAC	3 cut(s)	164, 175, 490
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	3 cut(s)	305, 402, 407
AjiI	CACGTC	1 cut(s)	513
AjuI	GAANNNNNNNTTGG	2 cut(s)	139, 171
AluBI	AGCT	4 cut(s)	349, 461, 530, 584
AluI	AGCT	4 cut(s)	349, 461, 530, 584
Alw26I	GTCTC	2 cut(s)	260, 595
AlwI	GGATC	1 cut(s)	78
AoxI	GGCC	2 cut(s)	151, 498
ApeKI	GCWGC	1 cut(s)	27
AspS9I	GGNCC	2 cut(s)	152, 499
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	2 cut(s)	458, 638
AsuNHI	GCTAGC	1 cut(s)	526
BanII	GRGCYC	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	445
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	1 cut(s)	645
BceAI	ACGGC	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	2 cut(s)	260, 595
BfaI	CTAG	4 cut(s)	93, 527, 531, 554
BfmI	CTRYAG	1 cut(s)	312
BfuAI	ACCTGC	2 cut(s)	161, 329
BglI	GCCNNNNNGGC	1 cut(s)	150
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	3 cut(s)	28, 392, 395
BlsI	GCNGC	3 cut(s)	29, 393, 396
Bme1390I	CCNGG	1 cut(s)	523
BmgBI	CACGTC	1 cut(s)	513
BmgT120I	GGNCC	2 cut(s)	152, 499
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	523
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	645
BmtI	GCTAGC	1 cut(s)	530
BmuI	ACTGGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	445
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	3 cut(s)	42, 58, 97
BpuMI	CCSGG	1 cut(s)	523
BsaHI	GRCGYC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	1 cut(s)	660
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	2 cut(s)	255, 378
BseNI	ACTGG	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	39
BshFI	GGCC	2 cut(s)	153, 500
BsiSI	CCGG	3 cut(s)	24, 130, 522
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	2 cut(s)	260, 595
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	2 cut(s)	153, 500
Bso31I	GGTCTC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp1407I	TGTACA	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	70, 370
BspACI	CCGC	5 cut(s)	127, 335, 381, 392, 395
BspANI	GGCC	2 cut(s)	153, 500
BspCNI	CTCAG	2 cut(s)	256, 379
BspLI	GGNNCC	1 cut(s)	211
BspMI	ACCTGC	2 cut(s)	161, 329
BspOI	GCTAGC	1 cut(s)	530
BspPI	GGATC	1 cut(s)	78
BspTNI	GGTCTC	1 cut(s)	260
BsrBI	CCGCTC	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	87
BsrGI	TGTACA	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	2 cut(s)	70, 370
BssNI	GRCGYC	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	488
BstACI	GRCGYC	1 cut(s)	450
BstAUI	TGTACA	1 cut(s)	162
BstC8I	GCNNGC	2 cut(s)	528, 620
BstDEI	CTNAG	2 cut(s)	264, 387
BstDSI	CCRYGG	1 cut(s)	441
BstF5I	GGATG	1 cut(s)	660
BstKTI	GATC	2 cut(s)	73, 373
BstMAI	GTCTC	2 cut(s)	260, 595
BstMBI	GATC	2 cut(s)	70, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	521
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	445
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	153, 500
BtgI	CCRYGG	1 cut(s)	441
BtrI	CACGTC	1 cut(s)	513
BtsCI	GGATG	1 cut(s)	660
BveI	ACCTGC	2 cut(s)	161, 329
Cac8I	GCNNGC	2 cut(s)	528, 620
Cfr13I	GGNCC	2 cut(s)	152, 499
Csp6I	GTAC	3 cut(s)	163, 174, 489
CviAII	CATG	3 cut(s)	74, 234, 623
CviQI	GTAC	3 cut(s)	163, 174, 489
DdeI	CTNAG	2 cut(s)	264, 387
DpnI	GATC	2 cut(s)	72, 372
DpnII	GATC	2 cut(s)	70, 370
DraI	TTTAAA	2 cut(s)	66, 597
Eco24I	GRGCYC	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	121
FaeI	CATG	3 cut(s)	77, 237, 626
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	3 cut(s)	73, 233, 622
FblI	GTMKAC	1 cut(s)	515
Fnu4HI	GCNGC	3 cut(s)	28, 392, 395
FokI	GGATG	1 cut(s)	667
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	3 cut(s)	28, 392, 395
FspBI	CTAG	4 cut(s)	93, 527, 531, 554
GluI	GCNGC	3 cut(s)	28, 392, 395
HaeIII	GGCC	2 cut(s)	153, 500
HapII	CCGG	3 cut(s)	24, 130, 522
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	3 cut(s)	77, 237, 626
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	2 cut(s)	32, 677
HpaII	CCGG	3 cut(s)	24, 130, 522
HphI	GGTGA	2 cut(s)	458, 638
Hpy166II	GTNNAC	3 cut(s)	484, 516, 578
Hpy188I	TCNGA	2 cut(s)	51, 265
Hpy188III	TCNNGA	7 cut(s)	59, 114, 386, 554, 648, 674, 681
Hpy8I	GTNNAC	3 cut(s)	484, 516, 578
Hpy99I	CGWCG	2 cut(s)	201, 576
HpyAV	CCTTC	5 cut(s)	30, 165, 223, 401, 408
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4IV	ACGT	4 cut(s)	417, 450, 512, 574
HpyCH4V	TGCA	2 cut(s)	104, 658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	2 cut(s)	264, 387
HpySE526I	ACGT	4 cut(s)	417, 450, 512, 574
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	3 cut(s)	77, 237, 626
Kzo9I	GATC	2 cut(s)	70, 370
LmnI	GCTCC	2 cut(s)	209, 388
Lsp1109I	GCAGC	1 cut(s)	39
LweI	GCATC	1 cut(s)	645
MaeI	CTAG	4 cut(s)	93, 527, 531, 554
MaeII	ACGT	4 cut(s)	417, 450, 512, 574
MaeIII	GTNAC	2 cut(s)	446, 626
MalI	GATC	2 cut(s)	72, 372
MbiI	CCGCTC	1 cut(s)	383
MboI	GATC	2 cut(s)	70, 370
MboII	GAAGA	2 cut(s)	445, 478
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	5 cut(s)	402, 433, 504, 543, 605
MnlI	CCTC	4 cut(s)	250, 339, 529, 583
MseI	TTAA	3 cut(s)	65, 596, 608
MspI	CCGG	3 cut(s)	24, 130, 522
MspR9I	CCNGG	1 cut(s)	523
MunI	CAATTG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	150
NciI	CCSGG	1 cut(s)	523
NdeII	GATC	2 cut(s)	70, 370
NheI	GCTAGC	1 cut(s)	526
NlaIII	CATG	3 cut(s)	77, 237, 626
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	2 cut(s)	446, 626
PfeI	GAWTC	2 cut(s)	32, 677
PkrI	GCNGC	3 cut(s)	29, 393, 396
PsiI	TTATAA	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	152, 499
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	3 cut(s)	164, 175, 490
RsaNI	GTAC	3 cut(s)	163, 174, 489
SaqAI	TTAA	3 cut(s)	65, 596, 608
SatI	GCNGC	3 cut(s)	28, 392, 395
Sau3AI	GATC	2 cut(s)	70, 370
Sau96I	GGNCC	2 cut(s)	152, 499
ScrFI	CCNGG	1 cut(s)	523
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	1 cut(s)	645
SfcI	CTRYAG	1 cut(s)	312
SmlI	CTYRAG	3 cut(s)	37, 57, 112
SmoI	CTYRAG	3 cut(s)	37, 57, 112
Sse9I	AATT	5 cut(s)	402, 433, 504, 543, 605
SsiI	CCGC	5 cut(s)	127, 335, 381, 392, 395
SspMI	CTAG	4 cut(s)	93, 527, 531, 554
StyD4I	CCNGG	1 cut(s)	521
TaaI	ACNGT	1 cut(s)	488
TaiI	ACGT	4 cut(s)	420, 453, 515, 577
TaqI	TCGA	1 cut(s)	216
TasI	AATT	5 cut(s)	402, 433, 504, 543, 605
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	2 cut(s)	394, 397
TfiI	GAWTC	2 cut(s)	32, 677
Tru1I	TTAA	3 cut(s)	65, 596, 608
Tru9I	TTAA	3 cut(s)	65, 596, 608
TseFI	GTSAC	2 cut(s)	446, 626
TseI	GCWGC	1 cut(s)	27
Tsp45I	GTSAC	2 cut(s)	446, 626
TspDTI	ATGAA	1 cut(s)	17
XbaI	TCTAGA	1 cut(s)	553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	515
XspI	CTAG	4 cut(s)	93, 527, 531, 554
ZraI	GACGTC	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.