Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0011614

Physical Location & Seq

Genomic Coordinates Reverse (-)

22129543 .. 22155790

Gene Structure 26248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG218000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCTACAGCGACCTACCCACCTCCACCACCGTATTATAAGCTATACAAAGATCACTTGCAAGATCCCAAATCAGCTCCTGAGCAGCAGCCACCAATTGAAGGGACATACATTTGCTATGGTGCTCATTACACTATGCTGGGCAAGGATCTTTTGGTGGTTGTTTGGGATTCCGGGAAGCTCTTGGTTCTCTCTTTCTGCAACGAAATGCACAGATTTTTTCCTGTGACACAGGGTCAACTTTCTAATCCTGGAAACCCAAGGAATCAGCTTGCAAGAATGCTAGCAATTGATTCAAGTGTACATGGTGTCTCGTATTGTTCAGCAATTCTGTTGCTGTACAAGAATTCGATCAATGATCAGATCTTCTCAGTCATATTCTCTAGCCTACACTTTGACAGACTCCCTTCCACAGTTCGTCAATTCGCCAAGCAAGAACTAGCCGATGAAGCTTTCTATTATGGCATAGAATCGCAGATTAAGTCTGCGATGTTGCCACCTCTAATCTCAGGAATCGGTTTCTCGATTGTCACAAAAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

180

Amino Acids

20.17

Weight (kDa)

6.95

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	48 - 100	4.5e-07	RSE1/DDB1/CPSF1 first beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0011614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478521
rosa_laevigata	RLG00000023641
rosa_multiflora	Rmu_sc0001262.1_g000010 Rmu_sc0008105.1_g000006
rosa_roxburghii	Rroxscaffold_6G00403490
rosa_rugosa	Rorug03G0165800 Rorug03G0166100
rosa_samantha	Rh3AG216300 Rh3AG216700 Rh3AG216800 Rh3AG216900 Rh3AG218000 Rh3AG256500 Rh3BG249500 Rh3CG245300 Rh3CG246900 Rh3CG291400 Rh3DG243400 Rh3DG296000 Rh7CG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
AclWI	GGATC	2 cut(s)	59, 156
AcsI	RAATTY	1 cut(s)	346
AfaI	GTAC	2 cut(s)	303, 341
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	101, 297
AhdI	GACNNNNNGTC	1 cut(s)	234
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	5 cut(s)	43, 77, 181, 271, 452
AluI	AGCT	5 cut(s)	43, 77, 181, 271, 452
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	2 cut(s)	59, 156
AlwNI	CAGNNNCTG	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	85, 88
ApoI	RAATTY	1 cut(s)	346
AsuC2I	CCSGG	1 cut(s)	175
AsuNHI	GCTAGC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	97, 100
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	3 cut(s)	284, 384, 440
BfmI	CTRYAG	1 cut(s)	6
BglII	AGATCT	1 cut(s)	363
BisI	GCNGC	2 cut(s)	86, 89
BlsI	GCNGC	2 cut(s)	87, 90
Bme1390I	CCNGG	2 cut(s)	175, 252
BmeRI	GACNNNNNGTC	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	175, 252
BmtI	GCTAGC	1 cut(s)	287
Bpu10I	CCTNAGC	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	3 cut(s)	72, 384, 522
BseXI	GCAGC	2 cut(s)	97, 100
BseYI	CCCAGC	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp1407I	TGTACA	2 cut(s)	301, 339
Bsp143I	GATC	6 cut(s)	52, 64, 148, 351, 358, 363
BspCNI	CTCAG	3 cut(s)	73, 383, 521
BspOI	GCTAGC	1 cut(s)	287
BspPI	GGATC	2 cut(s)	59, 156
BsrGI	TGTACA	2 cut(s)	301, 339
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	6 cut(s)	52, 64, 148, 351, 358, 363
BssT1I	CCWWGG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	33, 415
BstAUI	TGTACA	2 cut(s)	301, 339
BstC8I	GCNNGC	2 cut(s)	273, 285
BstDEI	CTNAG	3 cut(s)	81, 370, 508
BstKTI	GATC	6 cut(s)	55, 67, 151, 354, 361, 366
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	6 cut(s)	52, 64, 148, 351, 358, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	2 cut(s)	173, 250
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	97, 100
BstX2I	RGATCY	3 cut(s)	64, 148, 363
BstYI	RGATCY	3 cut(s)	64, 148, 363
BtgZI	GCGATG	1 cut(s)	503
Cac8I	GCNNGC	2 cut(s)	273, 285
CaiI	CAGNNNCTG	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	302, 340
CviAII	CATG	1 cut(s)	305
CviJI	RGCY	9 cut(s)	5, 43, 77, 91, 181, 271, 387, 443, 452
CviKI_1	RGCY	9 cut(s)	5, 43, 77, 91, 181, 271, 387, 443, 452
CviQI	GTAC	2 cut(s)	302, 340
DdeI	CTNAG	3 cut(s)	81, 370, 508
DpnI	GATC	6 cut(s)	54, 66, 150, 353, 360, 365
DpnII	GATC	6 cut(s)	52, 64, 148, 351, 358, 363
DriI	GACNNNNNGTC	1 cut(s)	234
Eam1105I	GACNNNNNGTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	1 cut(s)	308
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	86, 89
Fsp4HI	GCNGC	2 cut(s)	86, 89
FspBI	CTAG	3 cut(s)	284, 384, 440
GluI	GCNGC	2 cut(s)	86, 89
GsaI	CCCAGC	1 cut(s)	143
HapII	CCGG	1 cut(s)	174
Hin1II	CATG	1 cut(s)	308
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	6 cut(s)	170, 265, 293, 402, 470, 513
HpaII	CCGG	1 cut(s)	174
Hpy166II	GTNNAC	2 cut(s)	239, 302
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	3 cut(s)	80, 510, 523
Hpy8I	GTNNAC	2 cut(s)	239, 302
HpyAV	CCTTC	2 cut(s)	95, 417
HpyCH4III	ACNGT	2 cut(s)	33, 415
HpyCH4V	TGCA	4 cut(s)	61, 201, 211, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	3 cut(s)	81, 370, 508
Hsp92II	CATG	1 cut(s)	308
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	6 cut(s)	52, 64, 148, 351, 358, 363
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	8 cut(s)	93, 125, 187, 218, 237, 237, 264, 495
Lsp1109I	GCAGC	2 cut(s)	97, 100
MaeI	CTAG	3 cut(s)	284, 384, 440
MaeIII	GTNAC	2 cut(s)	226, 529
MalI	GATC	6 cut(s)	54, 66, 150, 353, 360, 365
MboI	GATC	6 cut(s)	52, 64, 148, 351, 358, 363
MboII	GAAGA	1 cut(s)	358
MfeI	CAATTG	2 cut(s)	96, 288
MflI	RGATCY	3 cut(s)	64, 148, 363
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	5 cut(s)	96, 288, 327, 346, 422
MlyI	GAGTC	1 cut(s)	396
MnlI	CCTC	2 cut(s)	33, 510
MseI	TTAA	1 cut(s)	480
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	2 cut(s)	175, 252
MunI	CAATTG	2 cut(s)	96, 288
Mva1269I	GAATGC	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	449
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	6 cut(s)	52, 64, 148, 351, 358, 363
NheI	GCTAGC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	308
NmuCI	GTSAC	2 cut(s)	226, 529
PctI	GAATGC	1 cut(s)	285
PfeI	GAWTC	5 cut(s)	170, 265, 293, 470, 513
PfoI	TCCNGGA	2 cut(s)	173, 250
PkrI	GCNGC	2 cut(s)	87, 90
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
PsiI	TTATAA	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	3 cut(s)	64, 148, 363
RsaI	GTAC	2 cut(s)	303, 341
RsaNI	GTAC	2 cut(s)	302, 340
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	2 cut(s)	86, 89
Sau3AI	GATC	6 cut(s)	52, 64, 148, 351, 358, 363
SchI	GAGTC	1 cut(s)	396
ScrFI	CCNGG	2 cut(s)	175, 252
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	8 cut(s)	17, 25, 45, 79, 183, 273, 454, 502
SfcI	CTRYAG	1 cut(s)	6
Sse9I	AATT	5 cut(s)	96, 288, 327, 346, 422
SspMI	CTAG	3 cut(s)	284, 384, 440
StyD4I	CCNGG	2 cut(s)	173, 250
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	33, 415
TaqI	TCGA	2 cut(s)	350, 524
TasI	AATT	5 cut(s)	96, 288, 327, 346, 422
TatI	WGTACW	2 cut(s)	301, 339
TfiI	GAWTC	5 cut(s)	170, 265, 293, 470, 513
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TseFI	GTSAC	2 cut(s)	226, 529
TseI	GCWGC	2 cut(s)	85, 88
Tsp45I	GTSAC	2 cut(s)	226, 529
TspDTI	ATGAA	1 cut(s)	462
XapI	RAATTY	1 cut(s)	346
XspI	CTAG	3 cut(s)	284, 384, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.