Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0011614

Physical Location & Seq

Genomic Coordinates Forward (+)

23433175 .. 23435316

Gene Structure 2142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG243400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCTACAGCAACCTACCCACCTCCACCACCGTATTATAAGCTATACAAAGATTACTTGCAAGATCCCAAATCAGCTCCTGAGCAGCGGCCACCAATTGAAGGGACATACATTTGCTATGGTGCTAATTACATTACGGATGACTTGCTTCCAAGCTTGGAAGAACAGGGAGTGCGTCAACTGTACCCAAAAGGCCCAAATATTGGTACATTTTTTCCTATGACACCGGGTCAACTTTCTAATCCTGGAAACTCAAGGAATCAGCTTGCAAGAATGCTAGCAATTGATTCAAGTAGACTCTTCGCACAAGCTCTGTATGTTGTTTGTGAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

111

Amino Acids

12.44

Weight (kDa)

5.24

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	4 - 74	1.5e-07	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478521
rosa_laevigata	RLG00000023641
rosa_multiflora	Rmu_sc0001262.1_g000010 Rmu_sc0008105.1_g000006
rosa_roxburghii	Rroxscaffold_6G00403490
rosa_rugosa	Rorug03G0165800 Rorug03G0166100
rosa_samantha	Rh3AG216300 Rh3AG216700 Rh3AG216800 Rh3AG216900 Rh3AG218000 Rh3AG256500 Rh3BG249500 Rh3CG245300 Rh3CG246900 Rh3CG291400 Rh3DG243400 Rh3DG296000 Rh7CG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
AccB7I	CCANNNNNTGG	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	295
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	59
AcoI	YGGCCR	1 cut(s)	89
AfaI	GTAC	2 cut(s)	185, 208
AfiI	CCNNNNNNNGG	2 cut(s)	101, 203
AgsI	TTSAA	2 cut(s)	101, 291
AhdI	GACNNNNNGTC	1 cut(s)	228
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	5 cut(s)	43, 77, 156, 265, 311
AluI	AGCT	5 cut(s)	43, 77, 156, 265, 311
AlwI	GGATC	1 cut(s)	59
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	2 cut(s)	89, 193
ApeKI	GCWGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	228
AsuNHI	GCTAGC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	228
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	2 cut(s)	86, 89
BlsI	GCNGC	2 cut(s)	87, 90
Bme1390I	CCNGG	2 cut(s)	228, 246
BmeRI	GACNNNNNGTC	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	2 cut(s)	228, 246
BmtI	GCTAGC	1 cut(s)	281
Bpu10I	CCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	238
BpuMI	CCSGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 203
BseBI	CCWGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	2 cut(s)	101, 203
BseMII	CTCAG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	2 cut(s)	91, 195
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	101, 203
BsmFI	GGGAC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	91, 195
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	2 cut(s)	91, 195
BspCNI	CTCAG	1 cut(s)	73
BspOI	GCTAGC	1 cut(s)	281
BspPI	GGATC	1 cut(s)	59
BssMI	GATC	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	33, 183
Bst6I	CTCTTC	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	267, 279
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	226, 244
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	91, 195
BtsCI	GGATG	1 cut(s)	145
Cac8I	GCNNGC	2 cut(s)	267, 279
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	194
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	184, 207
CviJI	RGCY	8 cut(s)	5, 43, 77, 91, 156, 195, 265, 311
CviKI_1	RGCY	8 cut(s)	5, 43, 77, 91, 156, 195, 265, 311
CviQI	GTAC	2 cut(s)	184, 207
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
DriI	GACNNNNNGTC	1 cut(s)	228
EaeI	YGGCCR	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	305
Eam1105I	GACNNNNNGTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	244
FaiI	YATR	7 cut(s)	39, 46, 109, 120, 221, 318, 334
FaqI	GGGAC	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	86, 89
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	2 cut(s)	86, 89
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	2 cut(s)	86, 89
HaeIII	GGCC	2 cut(s)	91, 195
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	164
HincII	GTYRAC	2 cut(s)	179, 233
HindII	GTYRAC	2 cut(s)	179, 233
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	3 cut(s)	259, 287, 297
HpaII	CCGG	1 cut(s)	227
Hpy166II	GTNNAC	3 cut(s)	179, 233, 296
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	3 cut(s)	179, 233, 296
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	2 cut(s)	33, 183
HpyCH4V	TGCA	2 cut(s)	61, 269
HpyF3I	CTNAG	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	5 cut(s)	93, 152, 231, 240, 258
Lsp1109I	GCAGC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	278
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	173, 292
MfeI	CAATTG	2 cut(s)	96, 282
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	3 cut(s)	96, 127, 282
MlyI	GAGTC	1 cut(s)	291
MnlI	CCTC	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	228, 246
MunI	CAATTG	2 cut(s)	96, 282
Mva1269I	GAATGC	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	246
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	1 cut(s)	64
NheI	GCTAGC	1 cut(s)	277
PctI	GAATGC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	259, 287
PflMI	CCANNNNNTGG	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	87, 90
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
PsiI	TTATAA	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	194
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	2 cut(s)	185, 208
RsaNI	GTAC	2 cut(s)	184, 207
SatI	GCNGC	2 cut(s)	86, 89
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	291
ScrFI	CCNGG	2 cut(s)	228, 246
SetI	ASST	7 cut(s)	17, 25, 45, 79, 158, 267, 313
SfcI	CTRYAG	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	3 cut(s)	96, 127, 282
SsiI	CCGC	1 cut(s)	88
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	2 cut(s)	226, 244
TaaI	ACNGT	2 cut(s)	33, 183
TasI	AATT	3 cut(s)	96, 127, 282
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	259, 287
TseI	GCWGC	1 cut(s)	85
TspGWI	ACGGA	1 cut(s)	152
Van91I	CCANNNNNTGG	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	295
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.