RchiOBHm_Chr3g0485541

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0008041
Physical Location & Seq
Reverse (-)
32288642 .. 32290486
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 837 bp
ATGTCCTTGAAATCAATCTGCTTCTCTGTTTGGCTCCCTAGCCCTTCTCCGAGTACCGCTGCTCCTGCTTCAATCTCTTCCCCCTATTCCTTTCCTTTGAGAAATCCAAACCACTCCGTCTCCAATTCCGGTTCTTCAAGGCCTCACCTGCTGCATTTCTCGAACAAGCTCGACTCCGCGTCCTTGTCTGAGGATGACGACGATTACGATTCCGATTCAGAAGCAGAGAAATCGGAAGTTGATATAGATGTAGATATAGAGTTAGAGATAGAGAAGACGGGGGCCAACTGCCGGAGAATCCGATCGGAAATCGGAATAGAGGCGCCGCTCGCCACCGTCTGGAACTTGTTGACGGATTACGAGAGACTGGCCGACTTCATTCCCGGACTCGCCGTCTGCCAGTTGCTCCAGAAGTCGGAGAACTACGCTCGCCTTTTTCAGATTGGGGAGCAGGACTTGGCGTTTGGGCTGAAATTCAACGCGAAAGGAGTGGTGGATTGTTTTGAGAATCCTCTAGAGAGCATTGCTAATGATTTGGGGGGTCTCACTCTGAAGCGTGATATTGAGTTTGACATGGTTGAAGGTGACTTTGAAATCTTTCGAGGAAAGTGGTCTCTCCAACAGCTTAACACTAGTGGGGAAATGGCATGTGATCCTTTGATAGACCAGAAAATGCAAACAACAACTACTCTTTCCTACTTGGTTGATGTAAAGCCGAAGATGTTGTTGCCAGTTCAGCTGGTTGAGGGTAGACTGTGCAAGGAGATCAAAATAAACCTAGCTTGCATCCGGGAAGAAGCAATGAAAATGACTCGCGAAACTCTTCTTACTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

278

Amino Acids

31.05

Weight (kDa)

4.65

Isoelectric Point (pI)

56.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 106 - 254 1e-18 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 322
AccB7I CCANNNNNTGG 1 cut(s) 339
AccBSI CCGCTC 1 cut(s) 328
AccI GTMKAC 1 cut(s) 751
AccII CGCG 3 cut(s) 179, 482, 816
AciI CCGC 3 cut(s) 57, 177, 326
AclWI GGATC 1 cut(s) 647
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 473
AcuI CTGAAG 1 cut(s) 572
AcyI GRCGYC 1 cut(s) 323
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 3 cut(s) 291, 339, 415
AgsI TTSAA 6 cut(s) 10, 72, 138, 478, 581, 593
AhdI GACNNNNNGTC 2 cut(s) 178, 392
AhlI ACTAGT 1 cut(s) 632
AluBI AGCT 4 cut(s) 169, 625, 739, 782
AluI AGCT 4 cut(s) 169, 625, 739, 782
Alw26I GTCTC 4 cut(s) 124, 358, 548, 618
AlwI GGATC 1 cut(s) 647
AoxI GGCC 3 cut(s) 140, 282, 369
ApeKI GCWGC 2 cut(s) 59, 151
ApoI RAATTY 1 cut(s) 473
ArsI GACNNNNNNTTYG 2 cut(s) 446, 478
Asp700I GAANNNNTTC 2 cut(s) 597, 822
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 1 cut(s) 282
AsuC2I CCSGG 2 cut(s) 384, 791
AsuHPI GGTGA 2 cut(s) 137, 596
BanI GGYRCC 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 281
BbvI GCAGC 2 cut(s) 46, 138
BceAI ACGGC 1 cut(s) 377
BcgI CGANNNNNNTGC 2 cut(s) 213, 247
BcnI CCSGG 2 cut(s) 384, 791
BcoDI GTCTC 4 cut(s) 124, 358, 548, 618
BcuI ACTAGT 1 cut(s) 632
BfaI CTAG 4 cut(s) 39, 515, 633, 779
BfoI RGCGCY 1 cut(s) 326
BfuAI ACCTGC 1 cut(s) 156
BisI GCNGC 3 cut(s) 60, 152, 326
BlsI GCNGC 3 cut(s) 61, 153, 327
Bme1390I CCNGG 2 cut(s) 384, 791
BmeRI GACNNNNNGTC 2 cut(s) 178, 392
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 3 cut(s) 35, 283, 324
BmrFI CCNGG 2 cut(s) 384, 791
BmsI GCATC 1 cut(s) 795
BpiI GAAGAC 1 cut(s) 281
BpmI CTGGAG 1 cut(s) 392
BpuMI CCSGG 2 cut(s) 384, 791
BsaHI GRCGYC 1 cut(s) 323
BsaI GGTCTC 2 cut(s) 548, 618
BsaWI WCCGGW 1 cut(s) 128
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 291, 339, 415
Bse1I ACTGG 3 cut(s) 372, 400, 731
Bse3DI GCAATG 2 cut(s) 522, 807
BseGI GGATG 2 cut(s) 199, 786
BseLI CCNNNNNNNGG 3 cut(s) 291, 339, 415
BseMI GCAATG 2 cut(s) 522, 807
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 3 cut(s) 372, 400, 731
BseXI GCAGC 2 cut(s) 46, 138
Bsh1236I CGCG 3 cut(s) 179, 482, 816
Bsh1285I CGRYCG 1 cut(s) 305
BshFI GGCC 3 cut(s) 142, 284, 371
BshNI GGYRCC 1 cut(s) 322
BsiEI CGRYCG 1 cut(s) 305
BsiSI CCGG 4 cut(s) 129, 292, 384, 790
BslI CCNNNNNNNGG 3 cut(s) 291, 339, 415
BsmAI GTCTC 4 cut(s) 124, 358, 548, 618
BsmBI CGTCTC 1 cut(s) 124
BsnI GGCC 3 cut(s) 142, 284, 371
Bso31I GGTCTC 2 cut(s) 548, 618
Bsp143I GATC 3 cut(s) 302, 652, 765
Bsp68I TCGCGA 1 cut(s) 816
BspACI CCGC 3 cut(s) 57, 177, 326
BspANI GGCC 3 cut(s) 142, 284, 371
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 3 cut(s) 179, 482, 816
BspLI GGNNCC 3 cut(s) 35, 283, 324
BspMI ACCTGC 1 cut(s) 156
BspPI GGATC 1 cut(s) 647
BspT107I GGYRCC 1 cut(s) 322
BspTNI GGTCTC 2 cut(s) 548, 618
BsrBI CCGCTC 1 cut(s) 328
BsrDI GCAATG 2 cut(s) 522, 807
BsrI ACTGG 3 cut(s) 372, 400, 731
BssMI GATC 3 cut(s) 302, 652, 765
BssNI GRCGYC 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 337, 756
Bst6I CTCTTC 2 cut(s) 82, 828
BstACI GRCGYC 1 cut(s) 323
BstC8I GCNNGC 3 cut(s) 330, 430, 784
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 2 cut(s) 199, 786
BstFNI CGCG 3 cut(s) 179, 482, 816
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 3 cut(s) 305, 655, 768
BstMAI GTCTC 4 cut(s) 124, 358, 548, 618
BstMBI GATC 3 cut(s) 302, 652, 765
BstMCI CGRYCG 1 cut(s) 305
BstMWI GCNNNNNNNGC 4 cut(s) 65, 148, 329, 736
BstNSI RCATGY 1 cut(s) 651
BstSCI CCNGG 2 cut(s) 382, 789
BstUI CGCG 3 cut(s) 179, 482, 816
BstV1I GCAGC 2 cut(s) 46, 138
BstV2I GAAGAC 1 cut(s) 281
BsuRI GGCC 3 cut(s) 142, 284, 371
BtsCI GGATG 2 cut(s) 199, 786
BtuMI TCGCGA 1 cut(s) 816
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 3 cut(s) 330, 430, 784
CfoI GCGC 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 282
CseI GACGC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 54
CviAII CATG 2 cut(s) 574, 648
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 1 cut(s) 189
DinI GGCGCC 1 cut(s) 324
DpnI GATC 3 cut(s) 304, 654, 767
DpnII GATC 3 cut(s) 302, 652, 765
DriI GACNNNNNGTC 2 cut(s) 178, 392
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 2 cut(s) 82, 828
Eam1105I GACNNNNNGTC 2 cut(s) 178, 392
EarI CTCTTC 2 cut(s) 82, 828
Eco147I AGGCCT 1 cut(s) 142
Eco31I GGTCTC 2 cut(s) 548, 618
Eco57I CTGAAG 1 cut(s) 572
EgeI GGCGCC 1 cut(s) 324
EheI GGCGCC 1 cut(s) 324
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 2 cut(s) 577, 651
FaiI YATR 4 cut(s) 245, 257, 575, 649
FatI CATG 2 cut(s) 573, 647
FblI GTMKAC 1 cut(s) 751
Fnu4HI GCNGC 3 cut(s) 60, 152, 326
FokI GGATG 2 cut(s) 206, 773
Fsp4HI GCNGC 3 cut(s) 60, 152, 326
FspBI CTAG 4 cut(s) 39, 515, 633, 779
GlaI GCGC 1 cut(s) 324
GluI GCNGC 3 cut(s) 60, 152, 326
GsuI CTGGAG 1 cut(s) 392
HaeII RGCGCY 1 cut(s) 326
HaeIII GGCC 3 cut(s) 142, 284, 371
HapII CCGG 4 cut(s) 129, 292, 384, 790
HgaI GACGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 325
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 2 cut(s) 577, 651
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HinfI GANTC 7 cut(s) 173, 209, 215, 297, 387, 508, 811
HpaII CCGG 4 cut(s) 129, 292, 384, 790
HphI GGTGA 2 cut(s) 137, 596
Hpy166II GTNNAC 2 cut(s) 351, 752
Hpy188III TCNNGA 5 cut(s) 160, 340, 409, 515, 815
Hpy8I GTNNAC 2 cut(s) 351, 752
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 2 cut(s) 54, 575
HpyCH4III ACNGT 2 cut(s) 337, 756
HpyCH4V TGCA 4 cut(s) 154, 676, 759, 786
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 148, 329, 736
HpyF3I CTNAG 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 2 cut(s) 577, 651
HspAI GCGC 1 cut(s) 323
KasI GGCGCC 1 cut(s) 322
Kzo9I GATC 3 cut(s) 302, 652, 765
LmnI GCTCC 4 cut(s) 39, 67, 411, 448
Lsp1109I GCAGC 2 cut(s) 46, 138
LweI GCATC 1 cut(s) 795
MaeI CTAG 4 cut(s) 39, 515, 633, 779
MaeIII GTNAC 1 cut(s) 584
MalI GATC 3 cut(s) 304, 654, 767
MbiI CCGCTC 1 cut(s) 328
MboI GATC 3 cut(s) 302, 652, 765
MboII GAAGA 6 cut(s) 69, 126, 286, 730, 806, 815
MluCI AATT 2 cut(s) 124, 473
Mly113I GGCGCC 1 cut(s) 323
MlyI GAGTC 3 cut(s) 167, 381, 805
MmeI TCCRAC 2 cut(s) 396, 643
MnlI CCTC 6 cut(s) 153, 184, 313, 522, 596, 739
MroXI GAANNNNTTC 2 cut(s) 597, 822
MseI TTAA 1 cut(s) 627
MspA1I CMGCKG 2 cut(s) 59, 739
MspI CCGG 4 cut(s) 129, 292, 384, 790
MspR9I CCNGG 2 cut(s) 384, 791
MvnI CGCG 3 cut(s) 179, 482, 816
MwoI GCNNNNNNNGC 4 cut(s) 65, 148, 329, 736
NarI GGCGCC 1 cut(s) 323
NciI CCSGG 2 cut(s) 384, 791
NdeII GATC 3 cut(s) 302, 652, 765
NlaIII CATG 2 cut(s) 577, 651
NlaIV GGNNCC 3 cut(s) 35, 283, 324
NmuCI GTSAC 1 cut(s) 584
NruI TCGCGA 1 cut(s) 816
NspI RCATGY 1 cut(s) 651
PaqCI CACCTGC 1 cut(s) 156
PceI AGGCCT 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PdmI GAANNNNTTC 2 cut(s) 597, 822
PfeI GAWTC 4 cut(s) 209, 215, 297, 508
PflMI CCANNNNNTGG 1 cut(s) 339
PfoI TCCNGGA 2 cut(s) 382, 789
PkrI GCNGC 3 cut(s) 61, 153, 327
Ple19I CGATCG 1 cut(s) 305
PleI GAGTC 3 cut(s) 167, 381, 805
PluTI GGCGCC 1 cut(s) 326
PpsI GAGTC 3 cut(s) 167, 381, 805
PspN4I GGNNCC 3 cut(s) 35, 283, 324
PspPI GGNCC 1 cut(s) 282
PvuI CGATCG 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 739
RruI TCGCGA 1 cut(s) 816
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 3 cut(s) 60, 152, 326
Sau3AI GATC 3 cut(s) 302, 652, 765
Sau96I GGNCC 1 cut(s) 282
SchI GAGTC 3 cut(s) 167, 381, 805
ScrFI CCNGG 2 cut(s) 384, 791
SetI ASST 7 cut(s) 150, 171, 586, 627, 741, 780, 784
SfaNI GCATC 1 cut(s) 795
SfoI GGCGCC 1 cut(s) 324
SpeI ACTAGT 1 cut(s) 632
Sse9I AATT 2 cut(s) 124, 473
SseBI AGGCCT 1 cut(s) 142
SsiI CCGC 3 cut(s) 57, 177, 326
SspDI GGCGCC 1 cut(s) 322
SspMI CTAG 4 cut(s) 39, 515, 633, 779
StuI AGGCCT 1 cut(s) 142
StyD4I CCNGG 2 cut(s) 382, 789
TaaI ACNGT 2 cut(s) 337, 756
TaqI TCGA 3 cut(s) 161, 171, 601
TasI AATT 2 cut(s) 124, 473
TauI GCSGC 1 cut(s) 328
TfiI GAWTC 4 cut(s) 209, 215, 297, 508
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TseFI GTSAC 1 cut(s) 584
TseI GCWGC 2 cut(s) 59, 151
Tsp45I GTSAC 1 cut(s) 584
TspDTI ATGAA 2 cut(s) 367, 818
TspGWI ACGGA 2 cut(s) 106, 368
Van91I CCANNNNNTGG 1 cut(s) 339
XapI RAATTY 1 cut(s) 473
XbaI TCTAGA 1 cut(s) 514
XceI RCATGY 1 cut(s) 651
XmiI GTMKAC 1 cut(s) 751
XmnI GAANNNNTTC 2 cut(s) 597, 822
XspI CTAG 4 cut(s) 39, 515, 633, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.