Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011603

Physical Location & Seq

Genomic Coordinates Forward (+)

48599664 .. 48601676

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCAGTTGACAGGACTCAAAGATGCAGATAAGGAGGCTCTTGTTTATATTTTACCTCAGGATGTAAAGGGCCCTCAAACTGTTGCTTTCAATCTACCAAATGATGAGCGCATTGTAAAAGATCGAGGAACATCTATGGTCATGCTTAAGAATATCTCAGTGACCAAGTTCAAACATATTCTTCCGCCTATAGCTGATGTTTGTATTACAAAGGAACAACAAGAACTTGTAGATTTTGAATCCTTCTTCACTCACACAATTTTCCATGAATGCTGTCATGGGATTGGACCTCATACCATAACACTTCCAAATGGTAGAAAGTCTACAGAACTGCAAGAACTCCACTCAGCTTTGGAAGAAGCAAAAGCTGATATAGTTGGCCTTTGGGCACTGAAATTCCTAATCCACAAGGTGAGTACTGAGAACTGCTCCCGAAGAGCTTATAGAAATGCATGTATGCTTCTTTTCTTGCTGGATGCTTCCACTCAGTTTGTTTCGGTCTTGAGGAAGCTCATGGTTAAGCTAGCTATTCATCCTTCCCCATCTGTTTTTGTATGCACATTATTTTACCTACTTACTTTCATTGATTTGCTTCAAGAATCTCATATACACGTGCTATATATTCTCAGAAAAGGACAAGCATTGCAGTTTAACTGGTTGTACAAGCAAGGAGCCTTTATTTTGAATCCTGATGAAACATTCTCTGTTGACTTTGATAAGGTTGAAGGTGAGGTTGAGAGCCTGAGTAAGGAGATACTTACCATACAAGCAAAAGGTGACAAAGAGGCTGCAAAATTGCTTCTTCTGAAACACTGGACAATGATAGACCCCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

278

Amino Acids

31.63

Weight (kDa)

6.46

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011603)

Species	Orthologous Gene IDs
malus_domestica	MD00G1188100.v1.1 MD00G1188200.v1.1 MD09G1228800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0132171
rosa_laevigata	RLG00000008571 RLG00000008648 RLG00000010128 RLG00000011746 RLG00000012867 RLG00000019236
rosa_multiflora	Rmu_sc0003058.1_g000007
rosa_samantha	Rh1BG137400 Rh2AG355900 Rh2BG361900 Rh2DG379000 Rh3DG331500 Rh5BG403200 Rh5DG469700 Rh6AG232700
rosa_wichuraiana	Rw2G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	323
AciI	CCGC	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	395
AcvI	CACGTG	1 cut(s)	613
AdeI	CACNNNGTG	1 cut(s)	412
AfaI	GTAC	2 cut(s)	418, 662
AfiI	CCNNNNNNNGG	1 cut(s)	748
AflII	CTTAAG	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	610
AgsI	TTSAA	6 cut(s)	91, 172, 239, 596, 685, 725
AluBI	AGCT	7 cut(s)	194, 350, 368, 440, 511, 523, 527
AluI	AGCT	7 cut(s)	194, 350, 368, 440, 511, 523, 527
AoxI	GGCC	2 cut(s)	70, 379
ApaI	GGGCCC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	788
ApoI	RAATTY	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	3 cut(s)	70, 71, 287
AsuHPI	GGTGA	3 cut(s)	424, 740, 788
AsuNHI	GCTAGC	1 cut(s)	523
AvaII	GGWCC	1 cut(s)	287
AxyI	CCTNAGG	1 cut(s)	57
BaeGI	GKGCMC	2 cut(s)	74, 391
BanII	GRGCYC	1 cut(s)	74
BbrPI	CACGTG	1 cut(s)	613
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	1 cut(s)	550
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	2 cut(s)	189, 324
BfrI	CTTAAG	1 cut(s)	146
BisI	GCNGC	1 cut(s)	789
BlsI	GCNGC	1 cut(s)	790
BmcAI	AGTACT	1 cut(s)	418
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	3 cut(s)	70, 71, 287
BmiI	GGNNCC	2 cut(s)	72, 673
BmsI	GCATC	2 cut(s)	13, 466
BmtI	GCTAGC	1 cut(s)	527
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpuEI	CTTGAG	1 cut(s)	523
BsaAI	YACGTR	1 cut(s)	613
Bsc4I	CCNNNNNNNGG	1 cut(s)	748
Bse1I	ACTGG	2 cut(s)	659, 818
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	641
BseGI	GGATG	3 cut(s)	67, 481, 532
BseLI	CCNNNNNNNGG	1 cut(s)	748
BseMI	GCAATG	1 cut(s)	641
BseMII	CTCAG	7 cut(s)	71, 171, 360, 411, 500, 640, 734
BseNI	ACTGG	2 cut(s)	659, 818
BseSI	GKGCMC	2 cut(s)	74, 391
BseXI	GCAGC	1 cut(s)	775
BshFI	GGCC	2 cut(s)	72, 381
BslI	CCNNNNNNNGG	1 cut(s)	748
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	2 cut(s)	72, 381
Bsp120I	GGGCCC	1 cut(s)	70
Bsp1286I	GDGCHC	2 cut(s)	74, 391
Bsp1407I	TGTACA	1 cut(s)	660
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	2 cut(s)	72, 381
BspCNI	CTCAG	7 cut(s)	70, 170, 359, 412, 499, 639, 735
BspLI	GGNNCC	2 cut(s)	72, 673
BspOI	GCTAGC	1 cut(s)	527
BspQI	GCTCTTC	1 cut(s)	430
BspTI	CTTAAG	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	641
BsrGI	TGTACA	1 cut(s)	660
BsrI	ACTGG	2 cut(s)	659, 818
BssMI	GATC	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	430
BstAFI	CTTAAG	1 cut(s)	146
BstAUI	TGTACA	1 cut(s)	660
BstBAI	YACGTR	1 cut(s)	613
BstC8I	GCNNGC	1 cut(s)	525
BstDEI	CTNAG	7 cut(s)	57, 157, 346, 420, 486, 626, 743
BstENI	CCTNNNNNAGG	1 cut(s)	746
BstF5I	GGATG	3 cut(s)	67, 481, 532
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	456
BstSFI	CTRYAG	2 cut(s)	189, 324
BstSLI	GKGCMC	2 cut(s)	74, 391
BstV1I	GCAGC	1 cut(s)	775
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	72, 381
BtsCI	GGATG	3 cut(s)	67, 481, 532
BtsIMutI	CAGTG	3 cut(s)	165, 389, 811
Cac8I	GCNNGC	1 cut(s)	525
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	3 cut(s)	70, 71, 287
Csp6I	GTAC	2 cut(s)	417, 661
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	5 cut(s)	142, 266, 278, 453, 514
CviQI	GTAC	2 cut(s)	417, 661
DdeI	CTNAG	7 cut(s)	57, 157, 346, 420, 486, 626, 743
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
DraIII	CACNNNGTG	1 cut(s)	412
Eam1104I	CTCTTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	430
EciI	GGCGGA	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	287
Eco72I	CACGTG	1 cut(s)	613
Eco81I	CCTNAGG	1 cut(s)	57
EcoNI	CCTNNNNNAGG	1 cut(s)	746
EcoO109I	RGGNCCY	2 cut(s)	70, 71
EcoT22I	ATGCAT	1 cut(s)	454
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	5 cut(s)	145, 269, 281, 456, 517
FatI	CATG	5 cut(s)	141, 265, 277, 452, 513
FblI	GTMKAC	1 cut(s)	323
Fnu4HI	GCNGC	1 cut(s)	789
FokI	GGATG	3 cut(s)	74, 488, 519
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	789
FspBI	CTAG	1 cut(s)	524
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	1 cut(s)	789
HaeIII	GGCC	2 cut(s)	72, 381
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	5 cut(s)	145, 269, 281, 456, 517
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HincII	GTYRAC	2 cut(s)	9, 709
HindII	GTYRAC	2 cut(s)	9, 709
HinfI	GANTC	4 cut(s)	15, 239, 599, 685
HphI	GGTGA	3 cut(s)	424, 740, 788
Hpy166II	GTNNAC	3 cut(s)	9, 324, 709
Hpy188I	TCNGA	2 cut(s)	629, 807
Hpy188III	TCNNGA	5 cut(s)	59, 432, 502, 596, 689
Hpy8I	GTNNAC	3 cut(s)	9, 324, 709
HpyAV	CCTTC	3 cut(s)	253, 546, 719
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	7 cut(s)	4, 26, 334, 452, 558, 646, 791
HpyF3I	CTNAG	7 cut(s)	57, 157, 346, 420, 486, 626, 743
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	5 cut(s)	145, 269, 281, 456, 517
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	121
LguI	GCTCTTC	1 cut(s)	430
LmnI	GCTCC	2 cut(s)	434, 671
LpnPI	CCDG	6 cut(s)	44, 458, 640, 702, 755, 799
Lsp1109I	GCAGC	1 cut(s)	775
LweI	GCATC	2 cut(s)	13, 466
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	2 cut(s)	160, 776
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	5 cut(s)	173, 238, 368, 447, 794
MhlI	GDGCHC	2 cut(s)	74, 391
MluCI	AATT	3 cut(s)	258, 395, 794
MlyI	GAGTC	1 cut(s)	9
MnlI	CCTC	8 cut(s)	28, 66, 84, 119, 300, 498, 724, 778
Mph1103I	ATGCAT	1 cut(s)	454
MseI	TTAA	4 cut(s)	147, 519, 651, 835
MspCI	CTTAAG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	275
NdeII	GATC	1 cut(s)	121
NheI	GCTAGC	1 cut(s)	523
NlaIII	CATG	5 cut(s)	145, 269, 281, 456, 517
NlaIV	GGNNCC	2 cut(s)	72, 673
NmuCI	GTSAC	2 cut(s)	160, 776
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	1 cut(s)	456
PciSI	GCTCTTC	1 cut(s)	430
PctI	GAATGC	1 cut(s)	275
PfeI	GAWTC	3 cut(s)	239, 599, 685
PkrI	GCNGC	1 cut(s)	790
PleI	GAGTC	1 cut(s)	9
PmaCI	CACGTG	1 cut(s)	613
PmlI	CACGTG	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	9
Ppu21I	YACGTR	1 cut(s)	613
PspCI	CACGTG	1 cut(s)	613
PspN4I	GGNNCC	2 cut(s)	72, 673
PspOMI	GGGCCC	1 cut(s)	70
PspPI	GGNCC	3 cut(s)	70, 71, 287
RsaI	GTAC	2 cut(s)	418, 662
RsaNI	GTAC	2 cut(s)	417, 661
SapI	GCTCTTC	1 cut(s)	430
SaqAI	TTAA	4 cut(s)	147, 519, 651, 835
SatI	GCNGC	1 cut(s)	789
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	3 cut(s)	70, 71, 287
ScaI	AGTACT	1 cut(s)	418
SchI	GAGTC	1 cut(s)	9
SduI	GDGCHC	2 cut(s)	74, 391
SfaNI	GCATC	2 cut(s)	13, 466
SfcI	CTRYAG	2 cut(s)	189, 324
SinI	GGWCC	1 cut(s)	287
SmlI	CTYRAG	2 cut(s)	146, 502
SmoI	CTYRAG	2 cut(s)	146, 502
Sse9I	AATT	3 cut(s)	258, 395, 794
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	524
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	1 cut(s)	124
TaqII	GACCGA	1 cut(s)	487
TasI	AATT	3 cut(s)	258, 395, 794
TatI	WGTACW	2 cut(s)	416, 660
TfiI	GAWTC	3 cut(s)	239, 599, 685
Tru1I	TTAA	4 cut(s)	147, 519, 651, 835
Tru9I	TTAA	4 cut(s)	147, 519, 651, 835
TscAI	CASTG	3 cut(s)	165, 396, 818
TseFI	GTSAC	2 cut(s)	160, 776
TseI	GCWGC	1 cut(s)	788
Tsp45I	GTSAC	2 cut(s)	160, 776
TspDTI	ATGAA	4 cut(s)	282, 521, 571, 708
TspRI	CASTG	3 cut(s)	165, 396, 818
Vha464I	CTTAAG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	287
XagI	CCTNNNNNAGG	1 cut(s)	746
XapI	RAATTY	1 cut(s)	395
XceI	RCATGY	1 cut(s)	456
XmiI	GTMKAC	1 cut(s)	323
XspI	CTAG	1 cut(s)	524
ZrmI	AGTACT	1 cut(s)	418
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.