Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003554

Physical Location & Seq

Genomic Coordinates Forward (+)

60135360 .. 60137203

Gene Structure 1844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCCGGAATTGTGGTGGTTTTTGACTTTGACAAGACCATCATTGACTGCGACAGCGACAACTGGGTCGTCGATGGGTTGGGTGCCACTGACTTGTTCAATCAGCTCCTCCCCACCATGCCTTGGAACTCTCTCATGGATAGGATGATGAAGGAGCTTCATTCACAAGGAAAAACGATTGAGGACATTGTGGAGGTGCTCAAAAGGACTCCAATTCATCCCAGAATTGTGCCAGCCATTAAAGCAGCCCATGCTTTAGGATGTGACTTGAGGATTGTGAGTGATGCGAATCTGTTTTTCATTGAAACGATTTTGAAGCATCTTGGTCTGCAGGAATATTTCTCAGAAATCAACACTAACCCAGGTTATGTTGATGAAGAAGGAAGGGTTAGGATTTCACCTTTCTGTGATTTCACCAATTCACCTCATGGCTGCAGCCTCTGCCCTCCTAACATGTGCAAGAGTGTGATAATTGAGAGAATCCAAGCTTCGACTGAAGGGAGGAAAAGGATGATCTACTTGGGTGATGGAGTTGGTGATTACTGCCCAAGCTTGAAGCTCAAGGAAGGAGATTTCGTAATGCCAAGGAAGAATTTCCCACTTTTTGATAAGATTTGCCAGAATCCTCTGGCTCTGAAGGCCGAGATTCATGAGTGGACTGATGGAGAAGAGCTTGAGCACATTTTGCTCAACCTGATCAACACAATCGTCGTGGAAGAGAGTGCTGCTGCTCAGTTCATTACGACTGACTGCAAGTTACAGACCATCTCTGTTTCTGGTCATGAGGCCTTCCCTAAAGCTCTCCCAGTTCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043933 GO:0044085 GO:0044237 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0052731 GO:0052732 GO:0065003 GO:0071496 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

272

Amino Acids

30.47

Weight (kDa)

5.03

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	4 - 233	5.1e-95	Putative Phosphatase
HAD	PF12710	6 - 129	1.2e-07	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17710 AT1G17710 AT1G73010
fragaria_vesca	FvH4_1g29940 FvH4_6g33030 FvH4_6g33030
malus_domestica	MD09G1195300.v1.1 MD17G1175900.v1.1
prunus_persica	Prupe.3G051900_v2.0.a1 Prupe.3G052000_v2.0.a1
pyrus_communis	pycom09g11220
rosa_chinensis	RchiOBHm_Chr2g0142571 RchiOBHm_Chr3g0492381
rosa_laevigata	RLG00000019970 RLG00000022771 RLG00000028003
rosa_multiflora	Rmu_sc0000482.1_g000010 Rmu_sc0003156.1_g000017 Rmu_sc0038448.1_g000002 Rmu_ssc0000399.1_g000024
rosa_roxburghii	Rroxscaffold_2G00102490 Rroxscaffold_6G00392350
rosa_rugosa	Rorug02G0374200 Rorug03G0253500
rosa_samantha	Rh2AG426000 Rh2BG435600 Rh2CG412600 Rh3AG303700 Rh3BG339700 Rh3CG336900 Rh3DG338800
rosa_wichuraiana	Rw0G001610 Rw1G024260 Rw2G034910 Rw3G026780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	592
AcuI	CTGAAG	2 cut(s)	516, 656
AfiI	CCNNNNNNNGG	1 cut(s)	123
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	4 cut(s)	100, 305, 316, 556
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	7 cut(s)	106, 157, 488, 552, 559, 673, 800
AluI	AGCT	7 cut(s)	106, 157, 488, 552, 559, 673, 800
Alw21I	GWGCWC	2 cut(s)	201, 681
AlwNI	CAGNNNCTG	1 cut(s)	441
AoxI	GGCC	3 cut(s)	3, 639, 786
ApeKI	GCWGC	5 cut(s)	245, 432, 435, 725, 728
ApoI	RAATTY	1 cut(s)	592
Asp700I	GAANNNNTTC	1 cut(s)	593
AsuHPI	GGTGA	5 cut(s)	390, 406, 414, 536, 548
BanI	GGYRCC	1 cut(s)	83
Bbv12I	GWGCWC	2 cut(s)	201, 681
BbvI	GCAGC	5 cut(s)	257, 419, 447, 712, 715
BccI	CCATC	5 cut(s)	47, 68, 521, 656, 773
BciT130I	CCWGG	1 cut(s)	363
BclI	TGATCA	1 cut(s)	696
BfmI	CTRYAG	2 cut(s)	329, 433
BisI	GCNGC	5 cut(s)	246, 433, 436, 726, 729
BlsI	GCNGC	5 cut(s)	247, 434, 437, 727, 730
Bme1390I	CCNGG	1 cut(s)	363
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	363
BmrI	ACTGGG	2 cut(s)	73, 800
BmsI	GCATC	2 cut(s)	274, 328
BmuI	ACTGGG	2 cut(s)	73, 800
BpuEI	CTTGAG	3 cut(s)	289, 545, 695
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	3 cut(s)	122, 361, 584
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse1I	ACTGG	2 cut(s)	68, 806
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	122, 361, 584
BseGI	GGATG	4 cut(s)	150, 217, 266, 516
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	357, 746
BseNI	ACTGG	2 cut(s)	68, 806
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	5 cut(s)	257, 419, 447, 712, 715
BshFI	GGCC	3 cut(s)	5, 641, 788
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	2 cut(s)	201, 681
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	123
BsnI	GGCC	3 cut(s)	5, 641, 788
Bsp1286I	GDGCHC	2 cut(s)	201, 681
Bsp143I	GATC	2 cut(s)	513, 696
BspANI	GGCC	3 cut(s)	5, 641, 788
BspCNI	CTCAG	2 cut(s)	356, 745
BspHI	TCATGA	2 cut(s)	649, 781
BspLI	GGNNCC	1 cut(s)	85
BspMAI	CTGCAG	2 cut(s)	333, 437
BspQI	GCTCTTC	1 cut(s)	663
BspT107I	GGYRCC	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	68, 806
BssECI	CCNNGG	3 cut(s)	122, 361, 584
BssMI	GATC	2 cut(s)	513, 696
BssT1I	CCWWGG	2 cut(s)	122, 584
Bst2UI	CCWGG	1 cut(s)	363
Bst6I	CTCTTC	2 cut(s)	663, 711
BstAPI	GCANNNNNTGC	3 cut(s)	251, 441, 685
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	343, 732
BstF5I	GGATG	4 cut(s)	150, 217, 266, 516
BstKTI	GATC	2 cut(s)	516, 699
BstMBI	GATC	2 cut(s)	513, 696
BstMWI	GCNNNNNNNGC	5 cut(s)	242, 251, 441, 638, 685
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	1 cut(s)	457
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	2 cut(s)	329, 433
BstV1I	GCAGC	5 cut(s)	257, 419, 447, 712, 715
BsuRI	GGCC	3 cut(s)	5, 641, 788
BtsCI	GGATG	4 cut(s)	150, 217, 266, 516
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	234
CaiI	CAGNNNCTG	1 cut(s)	441
CciI	TCATGA	2 cut(s)	649, 781
CspCI	CAANNNNNGTGG	2 cut(s)	693, 728
CviAII	CATG	7 cut(s)	118, 136, 251, 428, 454, 650, 782
DdeI	CTNAG	2 cut(s)	343, 732
DpnI	GATC	2 cut(s)	515, 698
DpnII	GATC	2 cut(s)	513, 696
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	663, 711
EarI	CTCTTC	2 cut(s)	663, 711
Eco130I	CCWWGG	2 cut(s)	122, 584
Eco147I	AGGCCT	1 cut(s)	788
Eco57I	CTGAAG	2 cut(s)	516, 656
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	122, 584
ErhI	CCWWGG	2 cut(s)	122, 584
FaeI	CATG	7 cut(s)	121, 139, 254, 431, 457, 653, 785
FaiI	YATR	8 cut(s)	119, 137, 252, 369, 429, 455, 651, 783
FatI	CATG	7 cut(s)	117, 135, 250, 427, 453, 649, 781
FbaI	TGATCA	1 cut(s)	696
Fnu4HI	GCNGC	5 cut(s)	246, 433, 436, 726, 729
FokI	GGATG	4 cut(s)	157, 204, 273, 523
Fsp4HI	GCNGC	5 cut(s)	246, 433, 436, 726, 729
GluI	GCNGC	5 cut(s)	246, 433, 436, 726, 729
HaeIII	GGCC	3 cut(s)	5, 641, 788
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	7 cut(s)	121, 139, 254, 431, 457, 653, 785
HindIII	AAGCTT	2 cut(s)	486, 550
HinfI	GANTC	5 cut(s)	208, 289, 480, 622, 646
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	5 cut(s)	390, 406, 414, 536, 548
Hpy166II	GTNNAC	1 cut(s)	657
Hpy188I	TCNGA	2 cut(s)	346, 636
Hpy188III	TCNNGA	2 cut(s)	650, 782
Hpy8I	GTNNAC	1 cut(s)	657
Hpy99I	CGWCG	2 cut(s)	74, 713
HpyAV	CCTTC	7 cut(s)	145, 374, 378, 491, 560, 631, 799
HpyCH4V	TGCA	4 cut(s)	331, 435, 459, 753
HpyF10VI	GCNNNNNNNGC	5 cut(s)	242, 251, 441, 638, 685
HpyF3I	CTNAG	2 cut(s)	343, 732
Hsp92II	CATG	7 cut(s)	121, 139, 254, 431, 457, 653, 785
Ksp22I	TGATCA	1 cut(s)	696
Kzo9I	GATC	2 cut(s)	513, 696
LguI	GCTCTTC	1 cut(s)	663
LmnI	GCTCC	2 cut(s)	111, 154
Lsp1109I	GCAGC	5 cut(s)	257, 419, 447, 712, 715
LweI	GCATC	2 cut(s)	274, 328
MaeIII	GTNAC	2 cut(s)	263, 756
MalI	GATC	2 cut(s)	515, 698
MboI	GATC	2 cut(s)	513, 696
MboII	GAAGA	4 cut(s)	389, 601, 680, 728
MhlI	GDGCHC	2 cut(s)	201, 681
MluCI	AATT	6 cut(s)	9, 213, 225, 418, 471, 592
MlyI	GAGTC	1 cut(s)	202
MroXI	GAANNNNTTC	1 cut(s)	593
MseI	TTAA	1 cut(s)	240
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	5 cut(s)	242, 251, 441, 638, 685
NdeII	GATC	2 cut(s)	513, 696
NlaIII	CATG	7 cut(s)	121, 139, 254, 431, 457, 653, 785
NlaIV	GGNNCC	1 cut(s)	85
NmeAIII	GCCGAG	1 cut(s)	667
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	457
PagI	TCATGA	2 cut(s)	649, 781
PceI	AGGCCT	1 cut(s)	788
PciI	ACATGT	1 cut(s)	453
PciSI	GCTCTTC	1 cut(s)	663
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	4 cut(s)	289, 480, 622, 646
PflMI	CCANNNNNTGG	1 cut(s)	123
PkrI	GCNGC	5 cut(s)	247, 434, 437, 727, 730
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PscI	ACATGT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	85
PstI	CTGCAG	2 cut(s)	333, 437
PstNI	CAGNNNCTG	1 cut(s)	441
SapI	GCTCTTC	1 cut(s)	663
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	5 cut(s)	246, 433, 436, 726, 729
Sau3AI	GATC	2 cut(s)	513, 696
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	2 cut(s)	201, 681
SfaNI	GCATC	2 cut(s)	274, 328
SfcI	CTRYAG	2 cut(s)	329, 433
SmlI	CTYRAG	3 cut(s)	268, 560, 674
SmoI	CTYRAG	3 cut(s)	268, 560, 674
Sse9I	AATT	6 cut(s)	9, 213, 225, 418, 471, 592
SseBI	AGGCCT	1 cut(s)	788
SspI	AATATT	1 cut(s)	338
StuI	AGGCCT	1 cut(s)	788
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	2 cut(s)	122, 584
TaqI	TCGA	2 cut(s)	72, 491
TasI	AATT	6 cut(s)	9, 213, 225, 418, 471, 592
TfiI	GAWTC	4 cut(s)	289, 480, 622, 646
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	5 cut(s)	245, 432, 435, 725, 728
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	7 cut(s)	149, 164, 206, 289, 390, 638, 727
TspRI	CASTG	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	123
XapI	RAATTY	1 cut(s)	592
XceI	RCATGY	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.