RchiOBHm_Chr1g0327251

Belongs to the PdxS SNZ family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
15991583 .. 15993820
2238 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 171 bp
ATGTTCGAAGCACATGCTGTGACCCATTACAATGACCCGAATATACTTGCTGATGTGAGCTGTGGATTGGGTAAGGCTATGGTTGGACTGAATTTGAATGATGCCAAGGTCGAAAGGAATCAATTACATAAGCATTTAGGTAACACTGGACATGCTTCACTGAAGAAGTGA

Protein Analysis

56

Amino Acids

6.08

Weight (kDa)

7.98

Isoelectric Point (pI)

24.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 91
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
ApoI RAATTY 1 cut(s) 91
AsuII TTCGAA 1 cut(s) 6
BcgI CGANNNNNNTGC 1 cut(s) 30
BmsI GCATC 1 cut(s) 91
Bpu14I TTCGAA 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 151
Bsp119I TTCGAA 1 cut(s) 6
BspT104I TTCGAA 1 cut(s) 6
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 105
BstBI TTCGAA 1 cut(s) 6
BstNSI RCATGY 2 cut(s) 17, 155
BtsIMutI CAGTG 2 cut(s) 144, 158
CviAII CATG 2 cut(s) 14, 152
CviJI RGCY 2 cut(s) 60, 77
CviKI_1 RGCY 2 cut(s) 60, 77
Eco130I CCWWGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 2 cut(s) 17, 155
FaiI YATR 5 cut(s) 15, 44, 80, 129, 153
FatI CATG 2 cut(s) 13, 151
Hin1II CATG 2 cut(s) 17, 155
HinfI GANTC 1 cut(s) 118
Hsp92II CATG 2 cut(s) 17, 155
LpnPI CCDG 1 cut(s) 132
LweI GCATC 1 cut(s) 91
MaeIII GTNAC 2 cut(s) 19, 140
MluCI AATT 2 cut(s) 91, 122
MmeI TCCRAC 1 cut(s) 64
MslI CAYNNNNRTG 1 cut(s) 30
NlaIII CATG 2 cut(s) 17, 155
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 2 cut(s) 17, 155
NspV TTCGAA 1 cut(s) 6
PfeI GAWTC 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 30
SetI ASST 3 cut(s) 62, 111, 142
SfaNI GCATC 1 cut(s) 91
SfuI TTCGAA 1 cut(s) 6
SgeI CNNG 6 cut(s) 26, 49, 59, 118, 159, 164
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 2 cut(s) 91, 122
StyI CCWWGG 1 cut(s) 105
TaqI TCGA 2 cut(s) 6, 111
TasI AATT 2 cut(s) 91, 122
TfiI GAWTC 1 cut(s) 118
TscAI CASTG 2 cut(s) 151, 165
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspRI CASTG 2 cut(s) 151, 165
XapI RAATTY 1 cut(s) 91
XceI RCATGY 2 cut(s) 17, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.