Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005913

Physical Location & Seq

Genomic Coordinates Forward (+)

18212118 .. 18213185

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAAGAAACCAGGTGCAGTGGAAGCATGTCCTTTGGAGTCCCAGGTTGCCTCTGAAGTACCATCATCACCTTCTTCGCTTCCCAAAGAAGGTGGCGATGGTGATGACAAGAGCAATATGAAGATGAAGGAGAAAGTAATTGTCTTAATAGACGAGCCCCAACAATCACTAGAGAAGGAGAAGGAGGCTGCGGTGGGTGGATCCACCAGCTCTGGTGTGGTGCTTGATATGACACCTTCCAACCAGGGTCCGCCGGGTAGATCCAATCTAGAACTCGCTCTTTTCAACTCTTCGTCGTCTCAGTTAGTACCAGAGGTGGTGGAGGTGGAGGAGGGCTCAGACGAGAACCCGGCGGCGCGTGATCAGAAAAAGGAGCCCAGGGTTTTCAAATGCAACTTCTGCCAGAGAAAGTTCTCGACCTCCCAGGCCTTGGGAGGGCATCAGAACGCCCACAAGCAGGAGCGCCAGCTGGCGAAACGGCGGAGTCAAGCATTTGATCATATGGGTGGATTAGGGCACTCGCACTTTCCTTATTACAGCCCATATTCAGGCTTCTCCACACACTCTCTCTATGGATCTTACAACAGGTCTTCTCTTGGTGTCAGAATGGACTCCATGATTCATAAACCTTCTTATACCCCGTGGTCCCAAACTTACGGCCGCTTTGGCGTTGCCCTCGGCGGTGCTGCCAGCGGCCTCGGTGGAGGCGCTTCTGGCTGGTCGCGGCCAGGCTCGAGCCTCATCAACTGTATTGATCAACATAGGCTAACCTCCTTGCAAGGCCTCCAGAATAATATCAATGAATTAGGGCTTGCTGGACGAACTGCTACCGCTCCAAGATTCGAGCAGGGGAGTACTAGTGGTCTTCAAAACTTTGGTGGTTCAAATCTGTCAGCTCTCAACAACAGGGTGCCGCCAACAAATGGTGCTGATCTTCTCCGACAAGCAGAGCCTCCTCAATGTGATACCGATGGTGCTGGACTCGATCTGGTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

332

Amino Acids

35.34

Weight (kDa)

6.46

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005913)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12011 FvH4_7g04251
malus_domestica	MD07G1042100.v1.1
prunus_persica	Prupe.2G048100_v2.0.a1 Prupe.2G048400_v2.0.a1
pyrus_communis	pycom02g23410
rosa_chinensis	RchiOBHm_Chr1g0328791
rosa_laevigata	RLG00000008539 RLG00000029918
rosa_multiflora	Rmu_co8270465.1_g000001 Rmu_sc0000652.1_g000003 Rmu_sc0004241.1_g000001 Rmu_sc0013419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321370 Rroxscaffold_5G00354150
rosa_rugosa	Rorug01G0075900 Rorug04G0095500
rosa_samantha	Rh1AG094600 Rh1BG075500 Rh1CG091900 Rh1DG097900 Rh4AG157200 Rh4BG156700 Rh4CG167200 Rh4DG150900
rosa_wichuraiana	Rw1G007380 Rw4G012850 Rw4G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	910
AccB7I	CCANNNNNTGG	2 cut(s)	430, 923
AccBSI	CCGCTC	1 cut(s)	833
AccII	CGCG	2 cut(s)	358, 724
AclWI	GGATC	4 cut(s)	195, 208, 255, 583
AcoI	YGGCCR	2 cut(s)	658, 725
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	3 cut(s)	60, 309, 856
AfiI	CCNNNNNNNGG	6 cut(s)	89, 430, 435, 457, 548, 923
AgsI	TTSAA	4 cut(s)	286, 388, 869, 885
AhlI	ACTAGT	1 cut(s)	857
AjnI	CCWGG	6 cut(s)	10, 42, 243, 377, 423, 727
AluBI	AGCT	3 cut(s)	210, 469, 896
AluI	AGCT	3 cut(s)	210, 469, 896
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	4 cut(s)	195, 208, 255, 583
Ama87I	CYCGRG	1 cut(s)	733
AoxI	GGCC	5 cut(s)	426, 658, 694, 725, 781
ApeKI	GCWGC	2 cut(s)	188, 686
AspLEI	GCGC	3 cut(s)	358, 465, 710
AspS9I	GGNCC	2 cut(s)	248, 645
AsuC2I	CCSGG	2 cut(s)	255, 350
AsuHPI	GGTGA	2 cut(s)	60, 113
AvaI	CYCGRG	1 cut(s)	733
AvaII	GGWCC	2 cut(s)	248, 645
BaeGI	GKGCMC	1 cut(s)	519
BamHI	GGATCC	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	910
BanII	GRGCYC	3 cut(s)	159, 338, 378
BbsI	GAAGAC	2 cut(s)	582, 857
BbvI	GCAGC	2 cut(s)	175, 673
BccI	CCATC	3 cut(s)	70, 92, 965
BceAI	ACGGC	2 cut(s)	494, 673
BciT130I	CCWGG	6 cut(s)	12, 44, 245, 379, 425, 729
BclI	TGATCA	3 cut(s)	361, 496, 754
BcnI	CCSGG	2 cut(s)	255, 350
BcoDI	GTCTC	1 cut(s)	303
BcuI	ACTAGT	1 cut(s)	857
BfaI	CTAG	3 cut(s)	170, 269, 858
BfoI	RGCGCY	2 cut(s)	466, 711
BglI	GCCNNNNNGGC	1 cut(s)	666
BisI	GCNGC	7 cut(s)	189, 354, 661, 687, 694, 725, 914
BlsI	GCNGC	7 cut(s)	190, 355, 662, 688, 695, 726, 915
BmcAI	AGTACT	1 cut(s)	856
Bme1390I	CCNGG	8 cut(s)	12, 44, 245, 255, 350, 379, 425, 729
Bme18I	GGWCC	2 cut(s)	248, 645
BmeT110I	CYCGRG	1 cut(s)	733
BmgT120I	GGNCC	2 cut(s)	248, 645
BmiI	GGNNCC	5 cut(s)	202, 249, 375, 647, 912
BmrFI	CCNGG	8 cut(s)	12, 44, 245, 255, 350, 379, 425, 729
BmsI	GCATC	1 cut(s)	448
BpiI	GAAGAC	2 cut(s)	582, 857
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BpmI	CTGGAG	1 cut(s)	770
BpuMI	CCSGG	2 cut(s)	255, 350
BsaJI	CCNNGG	9 cut(s)	42, 244, 377, 378, 423, 429, 641, 676, 697
BsaXI	ACNNNNNCTCC	2 cut(s)	844, 874
Bsc4I	CCNNNNNNNGG	6 cut(s)	89, 430, 435, 457, 548, 923
BseBI	CCWGG	6 cut(s)	12, 44, 245, 379, 425, 729
BseDI	CCNNGG	9 cut(s)	42, 244, 377, 378, 423, 429, 641, 676, 697
BseLI	CCNNNNNNNGG	6 cut(s)	89, 430, 435, 457, 548, 923
BseMII	CTCAG	2 cut(s)	314, 351
BseRI	GAGGAG	2 cut(s)	344, 945
BseSI	GKGCMC	1 cut(s)	519
BseX3I	CGGCCG	1 cut(s)	658
BseXI	GCAGC	2 cut(s)	175, 673
BsgI	GTGCAG	1 cut(s)	36
Bsh1236I	CGCG	2 cut(s)	358, 724
Bsh1285I	CGRYCG	1 cut(s)	661
BshFI	GGCC	5 cut(s)	428, 660, 696, 727, 783
BshNI	GGYRCC	1 cut(s)	910
BsiEI	CGRYCG	1 cut(s)	661
BsiHKCI	CYCGRG	1 cut(s)	733
BsiSI	CCGG	2 cut(s)	254, 350
BslFI	GGGAC	2 cut(s)	25, 631
BslI	CCNNNNNNNGG	6 cut(s)	89, 430, 435, 457, 548, 923
BsmAI	GTCTC	1 cut(s)	303
BsmBI	CGTCTC	1 cut(s)	303
BsmFI	GGGAC	2 cut(s)	25, 631
BsnI	GGCC	5 cut(s)	428, 660, 696, 727, 783
BsoBI	CYCGRG	1 cut(s)	733
Bsp1286I	GDGCHC	4 cut(s)	159, 338, 378, 519
Bsp143I	GATC	8 cut(s)	200, 260, 361, 496, 575, 754, 931, 985
BspANI	GGCC	5 cut(s)	428, 660, 696, 727, 783
BspCNI	CTCAG	2 cut(s)	313, 350
BspFNI	CGCG	2 cut(s)	358, 724
BspLI	GGNNCC	5 cut(s)	202, 249, 375, 647, 912
BspPI	GGATC	4 cut(s)	195, 208, 255, 583
BspT107I	GGYRCC	1 cut(s)	910
BsrBI	CCGCTC	1 cut(s)	833
BssECI	CCNNGG	9 cut(s)	42, 244, 377, 378, 423, 429, 641, 676, 697
BssMI	GATC	8 cut(s)	200, 260, 361, 496, 575, 754, 931, 985
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	6 cut(s)	12, 44, 245, 379, 425, 729
Bst4CI	ACNGT	1 cut(s)	749
Bst6I	CTCTTC	1 cut(s)	295
BstAPI	GCANNNNNTGC	1 cut(s)	399
BstC8I	GCNNGC	4 cut(s)	467, 471, 691, 813
BstDEI	CTNAG	2 cut(s)	300, 337
BstDSI	CCRYGG	1 cut(s)	641
BstFNI	CGCG	2 cut(s)	358, 724
BstH2I	RGCGCY	2 cut(s)	466, 711
BstHHI	GCGC	3 cut(s)	358, 465, 710
BstKTI	GATC	8 cut(s)	203, 263, 364, 499, 578, 757, 934, 988
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	8 cut(s)	200, 260, 361, 496, 575, 754, 931, 985
BstMCI	CGRYCG	1 cut(s)	661
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 399, 666, 714
BstNI	CCWGG	6 cut(s)	12, 44, 245, 379, 425, 729
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	8 cut(s)	10, 42, 243, 253, 348, 377, 423, 727
BstSLI	GKGCMC	1 cut(s)	519
BstUI	CGCG	2 cut(s)	358, 724
BstV1I	GCAGC	2 cut(s)	175, 673
BstV2I	GAAGAC	2 cut(s)	582, 857
BstX2I	RGATCY	3 cut(s)	200, 260, 575
BstYI	RGATCY	3 cut(s)	200, 260, 575
BstZI	CGGCCG	1 cut(s)	658
BsuRI	GGCC	5 cut(s)	428, 660, 696, 727, 783
BtgI	CCRYGG	1 cut(s)	641
BtgZI	GCGATG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	4 cut(s)	467, 471, 691, 813
CfoI	GCGC	3 cut(s)	358, 465, 710
Cfr13I	GGNCC	2 cut(s)	248, 645
CsiI	ACCWGGT	1 cut(s)	10
Csp6I	GTAC	3 cut(s)	59, 308, 855
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	2 cut(s)	27, 616
CviQI	GTAC	3 cut(s)	59, 308, 855
DdeI	CTNAG	2 cut(s)	300, 337
DpnI	GATC	8 cut(s)	202, 262, 363, 498, 577, 756, 933, 987
DpnII	GATC	8 cut(s)	200, 260, 361, 496, 575, 754, 931, 985
EaeI	YGGCCR	2 cut(s)	658, 725
EagI	CGGCCG	1 cut(s)	658
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
EciI	GGCGGA	2 cut(s)	240, 496
EclXI	CGGCCG	1 cut(s)	658
Eco130I	CCWWGG	1 cut(s)	429
Eco147I	AGGCCT	2 cut(s)	428, 783
Eco24I	GRGCYC	3 cut(s)	159, 338, 378
Eco47I	GGWCC	2 cut(s)	248, 645
Eco52I	CGGCCG	1 cut(s)	658
Eco57I	CTGAAG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	733
EcoRII	CCWGG	6 cut(s)	10, 42, 243, 377, 423, 727
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	3 cut(s)	159, 338, 378
ErhI	CCWWGG	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	2 cut(s)	30, 619
FaqI	GGGAC	2 cut(s)	25, 631
FatI	CATG	2 cut(s)	26, 615
FauNDI	CATATG	1 cut(s)	501
FbaI	TGATCA	3 cut(s)	361, 496, 754
Fnu4HI	GCNGC	7 cut(s)	189, 354, 661, 687, 694, 725, 914
FriOI	GRGCYC	3 cut(s)	159, 338, 378
Fsp4HI	GCNGC	7 cut(s)	189, 354, 661, 687, 694, 725, 914
FspBI	CTAG	3 cut(s)	170, 269, 858
GlaI	GCGC	3 cut(s)	357, 464, 709
GluI	GCNGC	7 cut(s)	189, 354, 661, 687, 694, 725, 914
GsuI	CTGGAG	1 cut(s)	770
HaeII	RGCGCY	2 cut(s)	466, 711
HaeIII	GGCC	5 cut(s)	428, 660, 696, 727, 783
HapII	CCGG	2 cut(s)	254, 350
HhaI	GCGC	3 cut(s)	358, 465, 710
Hin1II	CATG	2 cut(s)	30, 619
Hin6I	GCGC	3 cut(s)	356, 463, 708
HinP1I	GCGC	3 cut(s)	356, 463, 708
HinfI	GANTC	6 cut(s)	38, 484, 611, 619, 840, 981
HpaII	CCGG	2 cut(s)	254, 350
HphI	GGTGA	2 cut(s)	60, 113
Hpy188I	TCNGA	6 cut(s)	55, 340, 366, 444, 605, 941
Hpy188III	TCNNGA	3 cut(s)	269, 415, 787
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	7 cut(s)	81, 83, 121, 169, 175, 246, 639
HpyCH4III	ACNGT	1 cut(s)	749
HpyCH4V	TGCA	3 cut(s)	17, 393, 778
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 399, 666, 714
HpyF3I	CTNAG	2 cut(s)	300, 337
Hsp92II	CATG	2 cut(s)	30, 619
HspAI	GCGC	3 cut(s)	356, 463, 708
Ksp22I	TGATCA	3 cut(s)	361, 496, 754
Kzo9I	GATC	8 cut(s)	200, 260, 361, 496, 575, 754, 931, 985
LmnI	GCTCC	3 cut(s)	373, 460, 838
Lsp1109I	GCAGC	2 cut(s)	175, 673
LweI	GCATC	1 cut(s)	448
MabI	ACCWGGT	1 cut(s)	10
MaeI	CTAG	3 cut(s)	170, 269, 858
MalI	GATC	8 cut(s)	202, 262, 363, 498, 577, 756, 933, 987
MbiI	CCGCTC	1 cut(s)	833
MboI	GATC	8 cut(s)	200, 260, 361, 496, 575, 754, 931, 985
MboII	GAAGA	7 cut(s)	16, 66, 133, 282, 582, 857, 926
MflI	RGATCY	3 cut(s)	200, 260, 575
MhlI	GDGCHC	4 cut(s)	159, 338, 378, 519
MluCI	AATT	2 cut(s)	138, 803
MlyI	GAGTC	4 cut(s)	47, 493, 605, 975
MmeI	TCCRAC	2 cut(s)	264, 964
MseI	TTAA	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	2 cut(s)	469, 693
MspI	CCGG	2 cut(s)	254, 350
MspR9I	CCNGG	8 cut(s)	12, 44, 245, 255, 350, 379, 425, 729
MvaI	CCWGG	6 cut(s)	12, 44, 245, 379, 425, 729
MvnI	CGCG	2 cut(s)	358, 724
MwoI	GCNNNNNNNGC	4 cut(s)	23, 399, 666, 714
NciI	CCSGG	2 cut(s)	255, 350
NdeI	CATATG	1 cut(s)	501
NdeII	GATC	8 cut(s)	200, 260, 361, 496, 575, 754, 931, 985
NlaIII	CATG	2 cut(s)	30, 619
NlaIV	GGNNCC	5 cut(s)	202, 249, 375, 647, 912
NmeAIII	GCCGAG	1 cut(s)	657
NspI	RCATGY	1 cut(s)	30
PaeR7I	CTCGAG	1 cut(s)	733
PasI	CCCWGGG	1 cut(s)	378
PceI	AGGCCT	2 cut(s)	428, 783
PfeI	GAWTC	2 cut(s)	619, 840
PflMI	CCANNNNNTGG	2 cut(s)	430, 923
PkrI	GCNGC	7 cut(s)	190, 355, 662, 688, 695, 726, 915
PleI	GAGTC	4 cut(s)	46, 492, 605, 975
PpsI	GAGTC	4 cut(s)	46, 492, 605, 975
Psp6I	CCWGG	6 cut(s)	10, 42, 243, 377, 423, 727
PspGI	CCWGG	6 cut(s)	10, 42, 243, 377, 423, 727
PspN4I	GGNNCC	5 cut(s)	202, 249, 375, 647, 912
PspPI	GGNCC	2 cut(s)	248, 645
PspXI	VCTCGAGB	1 cut(s)	733
PsuI	RGATCY	3 cut(s)	200, 260, 575
PvuII	CAGCTG	1 cut(s)	469
RsaI	GTAC	3 cut(s)	60, 309, 856
RsaNI	GTAC	3 cut(s)	59, 308, 855
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	7 cut(s)	189, 354, 661, 687, 694, 725, 914
Sau3AI	GATC	8 cut(s)	200, 260, 361, 496, 575, 754, 931, 985
Sau96I	GGNCC	2 cut(s)	248, 645
ScaI	AGTACT	1 cut(s)	856
SchI	GAGTC	4 cut(s)	47, 493, 605, 975
ScrFI	CCNGG	8 cut(s)	12, 44, 245, 255, 350, 379, 425, 729
SduI	GDGCHC	4 cut(s)	159, 338, 378, 519
SexAI	ACCWGGT	1 cut(s)	10
SfaNI	GCATC	1 cut(s)	448
Sfr274I	CTCGAG	1 cut(s)	733
SinI	GGWCC	2 cut(s)	248, 645
SlaI	CTCGAG	1 cut(s)	733
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	733
SmoI	CTYRAG	1 cut(s)	733
SpeI	ACTAGT	1 cut(s)	857
Sse9I	AATT	2 cut(s)	138, 803
SseBI	AGGCCT	2 cut(s)	428, 783
SspMI	CTAG	3 cut(s)	170, 269, 858
StuI	AGGCCT	2 cut(s)	428, 783
StyD4I	CCNGG	8 cut(s)	10, 42, 243, 253, 348, 377, 423, 727
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	749
TaqI	TCGA	4 cut(s)	416, 734, 843, 984
TasI	AATT	2 cut(s)	138, 803
TatI	WGTACW	1 cut(s)	854
TauI	GCSGC	5 cut(s)	356, 663, 696, 727, 916
TfiI	GAWTC	2 cut(s)	619, 840
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	1 cut(s)	24
TseI	GCWGC	2 cut(s)	188, 686
TspDTI	ATGAA	5 cut(s)	17, 134, 140, 611, 816
TspRI	CASTG	1 cut(s)	24
Van91I	CCANNNNNTGG	2 cut(s)	430, 923
VpaK11BI	GGWCC	2 cut(s)	248, 645
XbaI	TCTAGA	1 cut(s)	268
XceI	RCATGY	1 cut(s)	30
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XhoI	CTCGAG	1 cut(s)	733
XspI	CTAG	3 cut(s)	170, 269, 858
ZrmI	AGTACT	1 cut(s)	856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.