Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005614

Physical Location & Seq

Genomic Coordinates Reverse (-)

18736976 .. 18742118

Gene Structure 5143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGATGTTGCTCAAGAGGAAGGATTGGGACACCTATTCGACGTGGACTAGCTGGCATATCAATACTGAAGTGGTCACCAACTGGCGATTACTTTTTCTCCGCAAAATTTGATGGAACGTTTTATCTTTGGGAGACAAACACATGGGCATCTGAATCATGGTCGTCAACTAGCGGCTTTGTAAAGGGAGCATCATGGGATCCTGATGGGCGTATGATACTTCTTGCCTTCTCTAAATCTTCAACTTTGGGGTCCATTCACTTTGCTTCAAAGCCACCATCACTGGATGCGCACCTATTACCTGTCGAACTACCAGAGATTACGACCTCAACAAACAGTCAGGGCATTGAGAAGATAGCTTGGGATGCTTCGGGAGAGCGATTGGCTGTATCTTTTAAAGATTGCGATGAGTTGTATAGAGGTCTGATTGCCATCTATGATGTTAGAAGGACTCCTCTTATATCTGCATCATTAATTGGATTTATCAGAGGACCTGGGGAGTATCCAAAGCCTATAGCATTTTCATTCCATGACAAGTTTAAGCAAGGACCATTGCTTTCTGTGTGTTGGAGTAGTGGATTTTGCTGTACCTATCCTCTGATATTTCGTTCCCATGTTCTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006913 GO:0007610 GO:0007611 GO:0007612 GO:0008150 GO:0009566 GO:0012505 GO:0015630 GO:0016020 GO:0019953 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046907 GO:0050877 GO:0050890 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

208

Amino Acids

22.95

Weight (kDa)

8.53

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Aladin	PF25460	11 - 200	5.7e-33	Aladin seven-bladed propeller
Beta-prop_THOC3	PF25174	23 - 134	2e-06	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56900
fragaria_vesca	FvH4_7g04320 FvH4_7g04320 FvH4_7g04320 FvH4_7g04320
malus_domestica	MD12G1112000.v1.1 MD14G1101000.v1.1 MD14G1101100.v1.1
prunus_persica	Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1
pyrus_communis	pycom12g09160 pycom14g08800
rosa_chinensis	RchiOBHm_Chr1g0329271 RchiOBHm_Chr1g0329281
rosa_laevigata	RLG00000029905
rosa_multiflora	Rmu_co8376675.1_g000001 Rmu_sc0000203.1_g000006 Rmu_sc0010272.1_g000001
rosa_rugosa	Rorug01G0077700
rosa_samantha	Rh1AG096600 Rh1BG077300 Rh1CG093300 Rh1DG099600 Rh1DG100000
rosa_wichuraiana	Rw1G007480 Rw1G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	291
AciI	CCGC	2 cut(s)	102, 174
AclI	AACGTT	1 cut(s)	119
AclWI	GGATC	2 cut(s)	194, 207
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	589
AgsI	TTSAA	2 cut(s)	243, 270
AjiI	CACGTC	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	493
AluBI	AGCT	2 cut(s)	53, 359
AluI	AGCT	2 cut(s)	53, 359
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	194, 207
ApoI	RAATTY	1 cut(s)	107
AseI	ATTAAT	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	3 cut(s)	252, 491, 548
AsuHPI	GGTGA	1 cut(s)	69
AvaII	GGWCC	3 cut(s)	252, 491, 548
BamHI	GGATCC	1 cut(s)	199
BccI	CCATC	4 cut(s)	107, 200, 286, 440
BciT130I	CCWGG	1 cut(s)	495
BciVI	GTATCC	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	2 cut(s)	50, 171
BfmI	CTRYAG	1 cut(s)	513
BfuI	GTATCC	1 cut(s)	513
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	495
Bme18I	GGWCC	3 cut(s)	252, 491, 548
BmgBI	CACGTC	1 cut(s)	44
BmgT120I	GGNCC	3 cut(s)	252, 491, 548
BmiI	GGNNCC	2 cut(s)	201, 253
BmrFI	CCNGG	1 cut(s)	495
BmsI	GCATC	5 cut(s)	158, 200, 277, 355, 476
BsaBI	GATNNNNATC	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	494
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bse1I	ACTGG	2 cut(s)	88, 288
Bse3DI	GCAATG	1 cut(s)	551
Bse8I	GATNNNNATC	1 cut(s)	431
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	1 cut(s)	494
BseGI	GGATG	3 cut(s)	11, 292, 370
BseJI	GATNNNNATC	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	551
BseNI	ACTGG	2 cut(s)	88, 288
BseRI	GAGGAG	1 cut(s)	444
BslFI	GGGAC	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	2 cut(s)	102, 174
BspLI	GGNNCC	2 cut(s)	201, 253
BspPI	GGATC	2 cut(s)	194, 207
BsrDI	GCAATG	1 cut(s)	551
BsrI	ACTGG	2 cut(s)	88, 288
BssECI	CCNNGG	1 cut(s)	494
BssMI	GATC	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	624
BstEII	GGTNACC	1 cut(s)	75
BstF5I	GGATG	3 cut(s)	11, 292, 370
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	495
BstPI	GGTNACC	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	493
BstSFI	CTRYAG	1 cut(s)	513
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	513
BtgZI	GCGATG	1 cut(s)	420
BtrI	CACGTC	1 cut(s)	44
BtsCI	GGATG	3 cut(s)	11, 292, 370
BtsIMutI	CAGTG	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	1 cut(s)	292
Cfr13I	GGNCC	3 cut(s)	252, 491, 548
Csp6I	GTAC	1 cut(s)	588
CviAII	CATG	5 cut(s)	144, 159, 195, 530, 614
CviJI	RGCY	6 cut(s)	53, 177, 274, 359, 386, 511
CviKI_1	RGCY	6 cut(s)	53, 177, 274, 359, 386, 511
CviQI	GTAC	1 cut(s)	588
DdeI	CTNAG	1 cut(s)	624
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
DraI	TTTAAA	1 cut(s)	397
Eco47I	GGWCC	3 cut(s)	252, 491, 548
Eco57I	CTGAAG	1 cut(s)	89
Eco91I	GGTNACC	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	491
EcoO65I	GGTNACC	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	493
FaeI	CATG	5 cut(s)	147, 162, 198, 533, 617
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	5 cut(s)	143, 158, 194, 529, 613
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	3 cut(s)	18, 299, 377
Fsp4HI	GCNGC	1 cut(s)	175
FspAI	RTGCGCAY	1 cut(s)	291
FspBI	CTAG	2 cut(s)	50, 171
FspI	TGCGCA	1 cut(s)	291
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	1 cut(s)	175
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	5 cut(s)	147, 162, 198, 533, 617
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	2 cut(s)	155, 451
HphI	GGTGA	1 cut(s)	69
Hpy166II	GTNNAC	2 cut(s)	47, 168
Hpy188I	TCNGA	4 cut(s)	154, 426, 488, 600
Hpy188III	TCNNGA	3 cut(s)	15, 203, 372
Hpy8I	GTNNAC	2 cut(s)	47, 168
Hpy99I	CGWCG	1 cut(s)	45
HpyAV	CCTTC	3 cut(s)	15, 238, 441
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	2 cut(s)	43, 119
HpyCH4V	TGCA	1 cut(s)	467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	1 cut(s)	624
HpySE526I	ACGT	2 cut(s)	43, 119
Hsp92II	CATG	5 cut(s)	147, 162, 198, 533, 617
HspAI	GCGC	1 cut(s)	290
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	9 cut(s)	39, 69, 216, 269, 315, 326, 327, 480, 507
LweI	GCATC	5 cut(s)	158, 200, 277, 355, 476
MaeI	CTAG	2 cut(s)	50, 171
MaeII	ACGT	2 cut(s)	43, 119
MaeIII	GTNAC	1 cut(s)	75
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	3 cut(s)	231, 364, 611
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	2 cut(s)	107, 474
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	6 cut(s)	11, 337, 413, 465, 482, 606
MseI	TTAA	3 cut(s)	396, 473, 540
MspR9I	CCNGG	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	495
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	5 cut(s)	147, 162, 198, 533, 617
NlaIV	GGNNCC	2 cut(s)	201, 253
NmuCI	GTSAC	1 cut(s)	75
NsbI	TGCGCA	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PpuMI	RGGWCCY	1 cut(s)	491
PshBI	ATTAAT	1 cut(s)	473
Psp1406I	AACGTT	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	493
PspEI	GGTNACC	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	2 cut(s)	201, 253
PspPI	GGNCC	3 cut(s)	252, 491, 548
PspPPI	RGGWCCY	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	1 cut(s)	589
RsaNI	GTAC	1 cut(s)	588
SaqAI	TTAA	3 cut(s)	396, 473, 540
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	3 cut(s)	252, 491, 548
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	1 cut(s)	495
SfaNI	GCATC	5 cut(s)	158, 200, 277, 355, 476
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	3 cut(s)	252, 491, 548
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	2 cut(s)	107, 474
SsiI	CCGC	2 cut(s)	102, 174
SspMI	CTAG	2 cut(s)	50, 171
StyD4I	CCNGG	1 cut(s)	493
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	2 cut(s)	46, 122
TaqI	TCGA	2 cut(s)	40, 306
TasI	AATT	2 cut(s)	107, 474
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	3 cut(s)	396, 473, 540
Tru9I	TTAA	3 cut(s)	396, 473, 540
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	75
Tsp45I	GTSAC	1 cut(s)	75
TspDTI	ATGAA	1 cut(s)	513
TspRI	CASTG	1 cut(s)	288
VpaK11BI	GGWCC	3 cut(s)	252, 491, 548
VspI	ATTAAT	1 cut(s)	473
XapI	RAATTY	1 cut(s)	107
XspI	CTAG	2 cut(s)	50, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.