Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004210

Physical Location & Seq

Genomic Coordinates Forward (+)

19698181 .. 19699593

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGTTGGAAAGCAGCTGAGAAACTTATTAGGCACTGGAAGGTTCTTAGAGGAGACAATGTGATGATCATAAGAGGCAAAGACAAGGGTGAGACAGGTGTCATTAAGCGAGTCATTCGCTCTCAGAATCGTGTAATTGTGGAGGAACTTGTAAAGAAACATATCAAGCAAGGCCAAGGTCACGAAGGCGGGATATTTACTGTTGAAGCCCCTCTTCATGCCTCAAATGTGCAAGTAACAGATCCAGTAACAGGGAGGCCTTGTAAGGTTGGGGTTAAATATCTTGAGGATGGAACAAAAGTTAGAGTAGCAAGAGGCACAGGAGCATCGGGATCTATAATCCCTCGTCCTGAGATCTTGAAGATAAGAGCTACCCCAAGACCTACCGTTGCTAGTCCAAAGGATACTCCTATGAATCTTGTGTTAGAGAAGACGTATGATGCCAAAACAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW ribosomal_L24

Protein Analysis

151

Amino Acids

16.58

Weight (kDa)

10.18

Isoelectric Point (pI)

23.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KOW	PF00467	17 - 48	4.3e-10	KOW motif
ribosomal_L24	PF17136	50 - 109	8.9e-21	Large ribosomal subunit protein uL24, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23535 AT5G23535
fragaria_vesca	FvH4_2g23200
malus_domestica	MD03G1261300.v1.1 MD11G1281700.v1.1
prunus_persica	Prupe.1G577100_v2.0.a1 Prupe.1G577100_v2.0.a1 Prupe.8G237600_v2.0.a1 Prupe.8G237600_v2.0.a1
pyrus_communis	pycom03g20930 pycom11g24980
rosa_chinensis	RchiOBHm_Chr1g0329981 RchiOBHm_Chr6g0290451
rosa_laevigata	RLG00000012214 RLG00000029859
rosa_multiflora	Rmu_sc0000499.1_g000005 Rmu_sc0002890.1_g000007 Rmu_sc0009365.1_g000007 Rmu_sc0009365.1_g000020
rosa_roxburghii	Rroxscaffold_7G00177050
rosa_rugosa	Rorug01G0083600 Rorug01G0083700 Rorug01G0083800 Rorug01G0083900 Rorug01G0085000 Rorug01G0085100 Rorug06G0212800
rosa_samantha	Rh1BG081000 Rh6CG336500 Rh6DG323400
rosa_wichuraiana	Rw0G022380 Rw1G008290 Rw6G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	2 cut(s)	236, 340
AfiI	CCNNNNNNNGG	2 cut(s)	251, 450
AgsI	TTSAA	2 cut(s)	206, 361
AluBI	AGCT	2 cut(s)	17, 371
AluI	AGCT	2 cut(s)	17, 371
Alw26I	GTCTC	2 cut(s)	48, 86
AlwI	GGATC	2 cut(s)	236, 340
AoxI	GGCC	2 cut(s)	172, 257
ApeKI	GCWGC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	437
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	284
BciVI	GTATCC	1 cut(s)	397
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	2 cut(s)	48, 86
BfaI	CTAG	1 cut(s)	393
BfuI	GTATCC	1 cut(s)	397
BglII	AGATCT	1 cut(s)	354
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmsI	GCATC	2 cut(s)	335, 430
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	437
BpuEI	CTTGAG	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	175
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 247, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 450
Bse1I	ACTGG	2 cut(s)	41, 245
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	2 cut(s)	251, 450
BseMII	CTCAG	3 cut(s)	9, 137, 342
BseNI	ACTGG	2 cut(s)	41, 245
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	26
BshFI	GGCC	2 cut(s)	174, 259
BslI	CCNNNNNNNGG	2 cut(s)	251, 450
BsmAI	GTCTC	2 cut(s)	48, 86
BsnI	GGCC	2 cut(s)	174, 259
Bsp143I	GATC	4 cut(s)	66, 241, 332, 354
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	2 cut(s)	174, 259
BspCNI	CTCAG	3 cut(s)	10, 136, 343
BspPI	GGATC	2 cut(s)	236, 340
BsrI	ACTGG	2 cut(s)	41, 245
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	4 cut(s)	66, 241, 332, 354
BssT1I	CCWWGG	1 cut(s)	175
Bst4CI	ACNGT	2 cut(s)	202, 388
Bst6I	CTCTTC	1 cut(s)	219
BstDEI	CTNAG	4 cut(s)	18, 47, 123, 351
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	4 cut(s)	69, 244, 335, 357
BstMAI	GTCTC	2 cut(s)	48, 86
BstMBI	GATC	4 cut(s)	66, 241, 332, 354
BstPAI	GACNNNNGTC	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	437
BstX2I	RGATCY	3 cut(s)	241, 332, 354
BstYI	RGATCY	3 cut(s)	241, 332, 354
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	174, 259
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	34
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	5 cut(s)	17, 174, 209, 259, 371
CviKI_1	RGCY	5 cut(s)	17, 174, 209, 259, 371
DdeI	CTNAG	4 cut(s)	18, 47, 123, 351
DpnI	GATC	4 cut(s)	68, 243, 334, 356
DpnII	GATC	4 cut(s)	66, 241, 332, 354
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	175
Eco147I	AGGCCT	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	1 cut(s)	221
FaiI	YATR	6 cut(s)	71, 162, 219, 338, 413, 438
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FatI	CATG	1 cut(s)	217
FauI	CCCGC	1 cut(s)	182
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	174, 259
Hin1II	CATG	1 cut(s)	221
HinfI	GANTC	3 cut(s)	111, 127, 415
HphI	GGTGA	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	5 cut(s)	182, 284, 330, 350, 358
HpyAV	CCTTC	2 cut(s)	34, 179
HpyCH4III	ACNGT	2 cut(s)	202, 388
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	1 cut(s)	232
HpyF3I	CTNAG	4 cut(s)	18, 47, 123, 351
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	1 cut(s)	221
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	4 cut(s)	66, 241, 332, 354
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	7 cut(s)	22, 81, 237, 258, 306, 363, 435
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	2 cut(s)	335, 430
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	3 cut(s)	179, 235, 247
MalI	GATC	4 cut(s)	68, 243, 334, 356
MboI	GATC	4 cut(s)	66, 241, 332, 354
MboII	GAAGA	3 cut(s)	206, 373, 442
MflI	RGATCY	3 cut(s)	241, 332, 354
MluCI	AATT	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	9 cut(s)	44, 68, 136, 222, 232, 249, 280, 308, 354
MseI	TTAA	2 cut(s)	105, 276
MspA1I	CMGCKG	1 cut(s)	17
NdeII	GATC	4 cut(s)	66, 241, 332, 354
NlaIII	CATG	1 cut(s)	221
NmuCI	GTSAC	1 cut(s)	179
PceI	AGGCCT	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	127, 415
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PshAI	GACNNNNGTC	1 cut(s)	98
PsuI	RGATCY	3 cut(s)	241, 332, 354
PvuII	CAGCTG	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	105, 276
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	4 cut(s)	66, 241, 332, 354
SchI	GAGTC	1 cut(s)	120
SetI	ASST	8 cut(s)	19, 45, 100, 181, 270, 373, 385, 437
SfaNI	GCATC	2 cut(s)	335, 430
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	1 cut(s)	135
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	1 cut(s)	189
SspMI	CTAG	1 cut(s)	393
StuI	AGGCCT	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	2 cut(s)	202, 388
TaiI	ACGT	1 cut(s)	437
TasI	AATT	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	127, 415
Tru1I	TTAA	2 cut(s)	105, 276
Tru9I	TTAA	2 cut(s)	105, 276
TscAI	CASTG	1 cut(s)	41
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	206, 428
TspRI	CASTG	1 cut(s)	41
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.