Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007533

Physical Location & Seq

Genomic Coordinates Reverse (-)

25561055 .. 25561505

Gene Structure 451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAGTCCAGCTCAATCTCTGTCGGCCGGAGCATTCCGCCGGGATTTGAAGAATTGCATATCTCCGATCCTCGATTTCCACGCCAAAATTGCATGGGCTTGTCGCTGGCGATTGTGTCACTGCTCCTATTTTTCAAGGAGCCCCTCAAATATGTTAGCCAATATTCGATCTGGGCGATTCTCACCGTTGTCATCATTTTCAAACTCAGCATAGGTGTGACGTGGAACAAAGGGTTTAATCGTGCTTTGGGGACAATTTCAGCTGGAGGGCTAGCTCTAGGTATAGCAGAGTTGGCTGTAATGGCCGGAAGCTGGCAGGAGGTTGTGATTGCAGTCAATATTTTCATAGCAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0009987 GO:0010118 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0090332 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

118

Amino Acids

12.74

Weight (kDa)

7.91

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	29 - 118	2.5e-32	Aluminium activated malate transporter
FUSC_2	PF13515	51 - 114	8.9e-06	Fusaric acid resistance protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007533)

Species	Orthologous Gene IDs
malus_domestica	MD16G1045200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0333421 RchiOBHm_Chr2g0126501 RchiOBHm_Chr3g0474511
rosa_laevigata	RLG00000033994
rosa_multiflora	Rmu_sc0000662.1_g000018 Rmu_sc0003575.1_g000006 Rmu_sc0022428.1_g000002 Rmu_sc0034830.1_g000001 Rmu_sc0040437.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186040
rosa_rugosa	Rorug07G0320900
rosa_samantha	Rh2AG320400 Rh2CG308600 Rh2DG348200 Rh3BG221700 Rh3CG216400 Rh3CG361800 Rh3DG217200 Rh5BG072300 Rh5BG163500 Rh7AG255900 Rh7BG441900 Rh7CG272300
rosa_wichuraiana	Rw1G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	341
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	62
AcoI	YGGCCR	2 cut(s)	25, 303
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	3 cut(s)	50, 136, 202
AjiI	CACGTC	1 cut(s)	222
AluBI	AGCT	4 cut(s)	12, 263, 275, 312
AluI	AGCT	4 cut(s)	12, 263, 275, 312
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	2 cut(s)	25, 303
AsuC2I	CCSGG	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	175
AsuNHI	GCTAGC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	42
BfaI	CTAG	2 cut(s)	272, 278
BfuAI	ACCTGC	1 cut(s)	341
Bme1390I	CCNGG	1 cut(s)	42
BmgBI	CACGTC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	42
BmtI	GCTAGC	1 cut(s)	275
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	220
BseX3I	CGGCCG	1 cut(s)	25
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	27, 305
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	3 cut(s)	28, 41, 306
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	265
BsmI	GAATGC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	27, 305
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	67, 168
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	2 cut(s)	27, 305
BspCNI	CTCAG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	141
BspMI	ACCTGC	1 cut(s)	341
BspOI	GCTAGC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	62
BssMI	GATC	2 cut(s)	67, 168
Bst4CI	ACNGT	1 cut(s)	187
BstC8I	GCNNGC	3 cut(s)	108, 273, 314
BstDEI	CTNAG	1 cut(s)	206
BstKTI	GATC	2 cut(s)	70, 171
BstMBI	GATC	2 cut(s)	67, 168
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 293, 302
BstSCI	CCNGG	1 cut(s)	40
BstZI	CGGCCG	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	27, 305
BtrI	CACGTC	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	3 cut(s)	108, 273, 314
CviAII	CATG	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	2 cut(s)	69, 170
DpnII	GATC	2 cut(s)	67, 168
EaeI	YGGCCR	2 cut(s)	25, 303
EagI	CGGCCG	1 cut(s)	25
EciI	GGCGGA	1 cut(s)	27
EclXI	CGGCCG	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	144
Eco52I	CGGCCG	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	1 cut(s)	97
FaiI	YATR	6 cut(s)	60, 95, 153, 212, 284, 347
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	1 cut(s)	93
FriOI	GRGCYC	1 cut(s)	144
FspBI	CTAG	2 cut(s)	272, 278
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	27, 305
HapII	CCGG	3 cut(s)	28, 41, 306
Hin1II	CATG	1 cut(s)	97
HinfI	GANTC	2 cut(s)	5, 178
HpaII	CCGG	3 cut(s)	28, 41, 306
HphI	GGTGA	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	58, 93, 332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 293, 302
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	67, 168
LmnI	GCTCC	3 cut(s)	30, 129, 139
MaeI	CTAG	2 cut(s)	272, 278
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	2 cut(s)	117, 217
MalI	GATC	2 cut(s)	69, 170
MboI	GATC	2 cut(s)	67, 168
MboII	GAAGA	1 cut(s)	62
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	3 cut(s)	53, 88, 255
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	4 cut(s)	81, 155, 260, 313
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	3 cut(s)	28, 41, 306
MspR9I	CCNGG	1 cut(s)	42
Mva1269I	GAATGC	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	90, 293, 302
NciI	CCSGG	1 cut(s)	42
NdeII	GATC	2 cut(s)	67, 168
NheI	GCTAGC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	2 cut(s)	117, 217
PcsI	WCGNNNNNNNCGW	1 cut(s)	173
PctI	GAATGC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	178
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	237
Sau3AI	GATC	2 cut(s)	67, 168
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	9 cut(s)	14, 217, 224, 265, 277, 283, 314, 324, 355
SmiMI	CAYNNNNRTG	1 cut(s)	215
Sse9I	AATT	3 cut(s)	53, 88, 255
SsiI	CCGC	1 cut(s)	38
SspI	AATATT	2 cut(s)	164, 340
SspMI	CTAG	2 cut(s)	272, 278
StyD4I	CCNGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	2 cut(s)	73, 167
TasI	AATT	3 cut(s)	53, 88, 255
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	126
TseFI	GTSAC	2 cut(s)	117, 217
Tsp45I	GTSAC	2 cut(s)	117, 217
TspDTI	ATGAA	1 cut(s)	334
TspRI	CASTG	1 cut(s)	126
XspI	CTAG	2 cut(s)	272, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.