Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040437.1

Orthogroup ID

OG0007533

Physical Location & Seq

Genomic Coordinates Reverse (-)

72 .. 545

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040437.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atggcggccaaaattgggtcgttccggcacagcttcttggagaggagcaaggagaggctgctctcacgaaaagggtactcggatttcgggctcaacagctcagaatgcggcgatgagagagtcaagtgcggctggtttgggaaaatgtccgatgggttggtcgagttttacaacagtgtgaaatgcgggtggtttgggagaatgtccgatgggttggtcaacttgtgcaacagcgttcaggaggtttcggttaaactgtatcaaatgggccgctccgatcctcggaaagcttacttcgccgccaagatgggcttgtcgctggcgattgtgtcactactcatatttttcaaggagcccctcaaagatgctagccaatattccatcttggcgattctcaccgttgtcgtcgttttcgaattcagcataggtattgttactatactgatctcaatctcatttatgggttctgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0009987 GO:0010118 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0090332 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

157

Amino Acids

17.46

Weight (kDa)

9.1

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007533)

Species	Orthologous Gene IDs
malus_domestica	MD16G1045200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0333421 RchiOBHm_Chr2g0126501 RchiOBHm_Chr3g0474511
rosa_laevigata	RLG00000033994
rosa_multiflora	Rmu_sc0000662.1_g000018 Rmu_sc0003575.1_g000006 Rmu_sc0022428.1_g000002 Rmu_sc0034830.1_g000001 Rmu_sc0040437.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186040
rosa_rugosa	Rorug07G0320900
rosa_samantha	Rh2AG320400 Rh2CG308600 Rh2DG348200 Rh3BG221700 Rh3CG216400 Rh3CG361800 Rh3DG217200 Rh5BG072300 Rh5BG163500 Rh7AG255900 Rh7BG441900 Rh7CG272300
rosa_wichuraiana	Rw1G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	273
AciI	CCGC	6 cut(s)	5, 108, 129, 186, 271, 300
AclWI	GGATC	1 cut(s)	272
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	416
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	2 cut(s)	15, 282
AgsI	TTSAA	1 cut(s)	349
AluBI	AGCT	3 cut(s)	33, 99, 290
AluI	AGCT	3 cut(s)	33, 99, 290
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	2 cut(s)	6, 268
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	388
AsuII	TTCGAA	1 cut(s)	414
AsuNHI	GCTAGC	1 cut(s)	368
BanII	GRGCYC	2 cut(s)	93, 357
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	4 cut(s)	146, 203, 301, 389
BfaI	CTAG	1 cut(s)	369
BisI	GCNGC	6 cut(s)	6, 59, 109, 130, 271, 300
BlsI	GCNGC	6 cut(s)	7, 60, 110, 131, 272, 301
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	354
BmsI	GCATC	1 cut(s)	355
BmtI	GCTAGC	1 cut(s)	372
Bpu14I	TTCGAA	1 cut(s)	414
BsaBI	GATNNNNATC	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 282
Bse8I	GATNNNNATC	1 cut(s)	449
BseDI	CCNNGG	1 cut(s)	281
BseJI	GATNNNNATC	1 cut(s)	449
BseLI	CCNNNNNNNGG	2 cut(s)	15, 282
BseMII	CTCAG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	45
BshFI	GGCC	2 cut(s)	8, 270
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	15, 282
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	8, 270
Bsp119I	TTCGAA	1 cut(s)	414
Bsp1286I	GDGCHC	2 cut(s)	93, 357
Bsp143I	GATC	2 cut(s)	277, 444
BspACI	CCGC	6 cut(s)	5, 108, 129, 186, 271, 300
BspANI	GGCC	2 cut(s)	8, 270
BspCNI	CTCAG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	354
BspOI	GCTAGC	1 cut(s)	372
BspPI	GGATC	1 cut(s)	272
BspT104I	TTCGAA	1 cut(s)	414
BsrBI	CCGCTC	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	2 cut(s)	277, 444
Bst4CI	ACNGT	3 cut(s)	176, 258, 400
BstBI	TTCGAA	1 cut(s)	414
BstC8I	GCNNGC	2 cut(s)	321, 370
BstDEI	CTNAG	1 cut(s)	100
BstKTI	GATC	2 cut(s)	280, 447
BstMBI	GATC	2 cut(s)	277, 444
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 296
BstV1I	GCAGC	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	8, 270
BtgZI	GCGATG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	2 cut(s)	321, 370
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	76
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	2 cut(s)	279, 446
DpnII	GATC	2 cut(s)	277, 444
EaeI	YGGCCR	1 cut(s)	6
Eco24I	GRGCYC	2 cut(s)	93, 357
EcoRI	GAATTC	1 cut(s)	416
EcoT38I	GRGCYC	2 cut(s)	93, 357
FaiI	YATR	4 cut(s)	341, 425, 440, 461
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	6 cut(s)	6, 59, 109, 130, 271, 300
FriOI	GRGCYC	2 cut(s)	93, 357
Fsp4HI	GCNGC	6 cut(s)	6, 59, 109, 130, 271, 300
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	6 cut(s)	6, 59, 109, 130, 271, 300
HaeIII	GGCC	2 cut(s)	8, 270
HapII	CCGG	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	2 cut(s)	120, 391
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	6 cut(s)	82, 103, 151, 208, 277, 285
Hpy188III	TCNNGA	2 cut(s)	66, 239
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	410
HpyCH4III	ACNGT	3 cut(s)	176, 258, 400
HpyCH4V	TGCA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 296
HpyF3I	CTNAG	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	277, 444
LmnI	GCTCC	3 cut(s)	45, 278, 352
LpnPI	CCDG	4 cut(s)	38, 118, 224, 305
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	2 cut(s)	330, 433
MalI	GATC	2 cut(s)	279, 446
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	2 cut(s)	277, 444
MhlI	GDGCHC	2 cut(s)	93, 357
MluCI	AATT	2 cut(s)	12, 416
MlyI	GAGTC	1 cut(s)	129
MnlI	CCTC	5 cut(s)	36, 48, 235, 291, 368
MseI	TTAA	1 cut(s)	252
MspI	CCGG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	105, 296
NdeII	GATC	2 cut(s)	277, 444
NheI	GCTAGC	1 cut(s)	368
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	330
NspV	TTCGAA	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PctI	GAATGC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	6 cut(s)	7, 60, 110, 131, 272, 301
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	268
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	6 cut(s)	6, 59, 109, 130, 271, 300
Sau3AI	GATC	2 cut(s)	277, 444
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	129
SduI	GDGCHC	2 cut(s)	93, 357
SetI	ASST	5 cut(s)	35, 101, 246, 292, 430
SfaNI	GCATC	1 cut(s)	355
SfuI	TTCGAA	1 cut(s)	414
Sse9I	AATT	2 cut(s)	12, 416
SsiI	CCGC	6 cut(s)	5, 108, 129, 186, 271, 300
SspI	AATATT	1 cut(s)	377
SspMI	CTAG	1 cut(s)	369
TaaI	ACNGT	3 cut(s)	176, 258, 400
TaqI	TCGA	2 cut(s)	162, 414
TasI	AATT	2 cut(s)	12, 416
TauI	GCSGC	5 cut(s)	8, 111, 132, 273, 302
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	330
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	330
TspRI	CASTG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	416
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.