Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007533

Physical Location & Seq

Genomic Coordinates Reverse (-)

41001917 .. 41002503

Gene Structure 587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49848

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGGGAGAGTCAAGTGCAGCTGGTTTGGGAGAATGTCTGATGGGTGCGACGTTGAACAAAGGGTTTAATCATGCTTTGGGGACAATTTCGGCTGGAGGGCTAGCTCTAGGTGTAGCAGAGTTGGCTGTAATGGCCGGAAGTTGGTTTTCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0009987 GO:0010118 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0090332 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

51

Amino Acids

4.93

Weight (kDa)

4.75

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	14 - 48	3.7e-10	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0007533)

Species	Orthologous Gene IDs
malus_domestica	MD16G1045200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0333421 RchiOBHm_Chr2g0126501 RchiOBHm_Chr3g0474511
rosa_laevigata	RLG00000033994
rosa_multiflora	Rmu_sc0000662.1_g000018 Rmu_sc0003575.1_g000006 Rmu_sc0022428.1_g000002 Rmu_sc0034830.1_g000001 Rmu_sc0040437.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186040
rosa_rugosa	Rorug07G0320900
rosa_samantha	Rh2AG320400 Rh2CG308600 Rh2DG348200 Rh3BG221700 Rh3CG216400 Rh3CG361800 Rh3DG217200 Rh5BG072300 Rh5BG163500 Rh7AG255900 Rh7BG441900 Rh7CG272300
rosa_wichuraiana	Rw1G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	55
AluBI	AGCT	2 cut(s)	20, 104
AluI	AGCT	2 cut(s)	20, 104
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	17
AsuNHI	GCTAGC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	34
BfaI	CTAG	3 cut(s)	101, 107, 154
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
BmtI	GCTAGC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	29
BsgI	GTGCAG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	134
BspOI	GCTAGC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 131
BstV1I	GCAGC	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	102
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	6 cut(s)	20, 92, 100, 104, 125, 134
CviKI_1	RGCY	6 cut(s)	20, 92, 100, 104, 125, 134
EaeI	YGGCCR	1 cut(s)	132
FaeI	CATG	1 cut(s)	74
FaiI	YATR	1 cut(s)	72
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	3 cut(s)	101, 107, 154
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	1 cut(s)	74
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	39
Hpy99I	CGWCG	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 131
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	74
LpnPI	CCDG	3 cut(s)	6, 78, 148
Lsp1109I	GCAGC	1 cut(s)	29
MaeI	CTAG	3 cut(s)	101, 107, 154
MaeII	ACGT	1 cut(s)	50
MluCI	AATT	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	1 cut(s)	89
MseI	TTAA	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	122, 131
NheI	GCTAGC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	17
SetI	ASST	4 cut(s)	22, 53, 106, 112
SgeI	CNNG	7 cut(s)	24, 33, 83, 105, 113, 119, 147
Sse9I	AATT	1 cut(s)	84
SspMI	CTAG	3 cut(s)	101, 107, 154
TaiI	ACGT	1 cut(s)	53
TasI	AATT	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseI	GCWGC	1 cut(s)	17
XspI	CTAG	3 cut(s)	101, 107, 154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.