Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000662.1

Orthogroup ID

OG0007533

Physical Location & Seq

Genomic Coordinates Reverse (-)

77209 .. 77517

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000662.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atggcgaccaaaattgggtcgtttcggcagagctttgaggagaagagcaaggagaggctgctctcacgaaaagggtactcggatttcgggcttaacagctcggaatgcgacgatgggagagtcaagtgcggctggtttgggagaatgtctgatgagttggtcaacttttgcaacaacgttaaggaggtttctgttaaactgtatcaaatgggccgctccgatactcggaaaacttacttcgccgatggacttgtcactggcgattgtgtcactgctcatatttttcaaggagcccctcaaagatgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0009987 GO:0010118 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0090332 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

102

Amino Acids

11.52

Weight (kDa)

8.65

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007533)

Species	Orthologous Gene IDs
malus_domestica	MD16G1045200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0333421 RchiOBHm_Chr2g0126501 RchiOBHm_Chr3g0474511
rosa_laevigata	RLG00000033994
rosa_multiflora	Rmu_sc0000662.1_g000018 Rmu_sc0003575.1_g000006 Rmu_sc0022428.1_g000002 Rmu_sc0034830.1_g000001 Rmu_sc0040437.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186040
rosa_rugosa	Rorug07G0320900
rosa_samantha	Rh2AG320400 Rh2CG308600 Rh2DG348200 Rh3BG221700 Rh3CG216400 Rh3CG361800 Rh3DG217200 Rh5BG072300 Rh5BG163500 Rh7AG255900 Rh7BG441900 Rh7CG272300
rosa_wichuraiana	Rw1G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	216
AciI	CCGC	2 cut(s)	129, 214
AclI	AACGTT	1 cut(s)	177
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	2 cut(s)	15, 225
AgsI	TTSAA	1 cut(s)	287
AluBI	AGCT	2 cut(s)	33, 99
AluI	AGCT	2 cut(s)	33, 99
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	2 cut(s)	107, 239
BfaI	CTAG	1 cut(s)	307
BisI	GCNGC	3 cut(s)	59, 130, 214
BlsI	GCNGC	3 cut(s)	60, 131, 215
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	292
BmsI	GCATC	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 225
Bse1I	ACTGG	1 cut(s)	262
BseLI	CCNNNNNNNGG	2 cut(s)	15, 225
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	45
BshFI	GGCC	1 cut(s)	213
BslI	CCNNNNNNNGG	2 cut(s)	15, 225
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	295
BspACI	CCGC	2 cut(s)	129, 214
BspANI	GGCC	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	292
BspQI	GCTCTTC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	213
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	2 cut(s)	255, 270
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	76
CviJI	RGCY	7 cut(s)	33, 58, 91, 99, 132, 213, 293
CviKI_1	RGCY	7 cut(s)	33, 58, 91, 99, 132, 213, 293
CviQI	GTAC	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	295
FaiI	YATR	1 cut(s)	279
Fnu4HI	GCNGC	3 cut(s)	59, 130, 214
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	3 cut(s)	59, 130, 214
FspBI	CTAG	1 cut(s)	307
GluI	GCNGC	3 cut(s)	59, 130, 214
HaeIII	GGCC	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	120
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	5 cut(s)	82, 103, 151, 220, 228
Hpy188III	TCNNGA	1 cut(s)	66
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpySE526I	ACGT	1 cut(s)	177
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	2 cut(s)	221, 290
LpnPI	CCDG	2 cut(s)	118, 243
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	1 cut(s)	293
MaeI	CTAG	1 cut(s)	307
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	253, 268
MbiI	CCGCTC	1 cut(s)	216
MboII	GAAGA	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	129
MnlI	CCTC	4 cut(s)	31, 48, 178, 306
MseI	TTAA	3 cut(s)	93, 180, 195
Mva1269I	GAATGC	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	105
NlaIV	GGNNCC	1 cut(s)	292
NmuCI	GTSAC	2 cut(s)	253, 268
PciSI	GCTCTTC	1 cut(s)	38
PctI	GAATGC	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	60, 131, 215
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Psp1406I	AACGTT	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	211
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	3 cut(s)	93, 180, 195
SatI	GCNGC	3 cut(s)	59, 130, 214
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	4 cut(s)	35, 101, 180, 189
SfaNI	GCATC	1 cut(s)	293
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	2 cut(s)	129, 214
SspMI	CTAG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	201
TaiI	ACGT	1 cut(s)	180
TasI	AATT	1 cut(s)	12
TauI	GCSGC	2 cut(s)	132, 216
Tru1I	TTAA	3 cut(s)	93, 180, 195
Tru9I	TTAA	3 cut(s)	93, 180, 195
TscAI	CASTG	2 cut(s)	262, 277
TseFI	GTSAC	2 cut(s)	253, 268
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	2 cut(s)	253, 268
TspRI	CASTG	2 cut(s)	262, 277
XspI	CTAG	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.