Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007533

Physical Location & Seq

Genomic Coordinates Reverse (-)

20262970 .. 20263543

Gene Structure 574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44013

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAGAGTCAAGTGCGGCTGGTTTGGGAAAATGTCCGATGGGTTGGTCGAGTTTTACAACAGCGTTCAGGAGGTTTCGGTTAAACTGTATCAAATGGGCCGCTCCGATCCTCGGAAAGCTTACTTCGCCGCCAAGATGGGCTTGTCGCTGGCGATTGTGTCACTGCTCATATTTTTCAAGGAGCCCCTCAAAGATGCTAGCCAATATTCCATCTTGGCGATTCTCACCGTTGTCGTCGTTTTCGAATTCAGCATAGGTGCGACGTTGAACAAAGGGTTTAATCGTGCTTTGGGGACAATTTCGGCTGGAGGGCTGGCTCTAGGTATAGCAGAGTTGGCTGCAATGGCCGGAACTGGCAGGAGGTGTGATTGTAGTCAATATTGGATTTCTTCCAATGCTCTGCAAATGGGTCTCTCTCTTCATGGTTTTGGAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAATACATGAGGAAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0009987 GO:0010118 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0090332 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

160

Amino Acids

17.01

Weight (kDa)

9.22

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	31 - 118	2.2e-38	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007533)

Species	Orthologous Gene IDs
malus_domestica	MD16G1045200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0333421 RchiOBHm_Chr2g0126501 RchiOBHm_Chr3g0474511
rosa_laevigata	RLG00000033994
rosa_multiflora	Rmu_sc0000662.1_g000018 Rmu_sc0003575.1_g000006 Rmu_sc0022428.1_g000002 Rmu_sc0034830.1_g000001 Rmu_sc0040437.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186040
rosa_rugosa	Rorug07G0320900
rosa_samantha	Rh2AG320400 Rh2CG308600 Rh2DG348200 Rh3BG221700 Rh3CG216400 Rh3CG361800 Rh3DG217200 Rh5BG072300 Rh5BG163500 Rh7AG255900 Rh7BG441900 Rh7CG272300
rosa_wichuraiana	Rw1G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	102
AciI	CCGC	3 cut(s)	15, 100, 129
AclWI	GGATC	1 cut(s)	101
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	2 cut(s)	178, 268
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	2 cut(s)	97, 345
ApeKI	GCWGC	1 cut(s)	338
ApoI	RAATTY	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	217
AsuII	TTCGAA	1 cut(s)	243
AsuNHI	GCTAGC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	3 cut(s)	32, 130, 218
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	2 cut(s)	198, 320
BisI	GCNGC	4 cut(s)	16, 100, 129, 339
BlsI	GCNGC	4 cut(s)	17, 101, 130, 340
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	183
BmsI	GCATC	1 cut(s)	184
BmtI	GCTAGC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	358
BseXI	GCAGC	1 cut(s)	325
BshFI	GGCC	2 cut(s)	99, 347
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	99, 347
Bso31I	GGTCTC	1 cut(s)	416
Bsp119I	TTCGAA	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	3 cut(s)	15, 100, 129
BspANI	GGCC	2 cut(s)	99, 347
BspLI	GGNNCC	1 cut(s)	183
BspOI	GCTAGC	1 cut(s)	201
BspPI	GGATC	1 cut(s)	101
BspT104I	TTCGAA	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	416
BsrBI	CCGCTC	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	1 cut(s)	106
Bst4CI	ACNGT	2 cut(s)	87, 229
Bst6I	CTCTTC	1 cut(s)	423
BstBI	TTCGAA	1 cut(s)	243
BstC8I	GCNNGC	3 cut(s)	150, 199, 315
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 335, 344
BstV1I	GCAGC	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	99, 347
BtsI	GCAGTG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	161
Cac8I	GCNNGC	3 cut(s)	150, 199, 315
Cfr13I	GGNCC	1 cut(s)	97
CviAII	CATG	2 cut(s)	422, 469
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	186
FaeI	CATG	2 cut(s)	425, 472
FaiI	YATR	6 cut(s)	170, 254, 326, 423, 470, 481
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	2 cut(s)	421, 468
Fnu4HI	GCNGC	4 cut(s)	16, 100, 129, 339
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	4 cut(s)	16, 100, 129, 339
FspBI	CTAG	2 cut(s)	198, 320
GluI	GCNGC	4 cut(s)	16, 100, 129, 339
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	99, 347
HapII	CCGG	1 cut(s)	348
Hin1II	CATG	2 cut(s)	425, 472
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	2 cut(s)	6, 220
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	37, 106, 114
Hpy188III	TCNNGA	1 cut(s)	68
Hpy99I	CGWCG	2 cut(s)	239, 265
HpyCH4III	ACNGT	2 cut(s)	87, 229
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	2 cut(s)	341, 403
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 335, 344
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	425, 472
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	2 cut(s)	107, 181
LpnPI	CCDG	8 cut(s)	4, 53, 134, 291, 299, 339, 343, 361
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	2 cut(s)	198, 320
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	1 cut(s)	108
MbiI	CCGCTC	1 cut(s)	102
MboI	GATC	1 cut(s)	106
MboII	GAAGA	2 cut(s)	381, 410
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	2 cut(s)	245, 297
MlyI	GAGTC	1 cut(s)	15
MnlI	CCTC	7 cut(s)	64, 120, 197, 302, 354, 427, 465
MseI	TTAA	2 cut(s)	81, 279
MspI	CCGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	3 cut(s)	125, 335, 344
NdeII	GATC	1 cut(s)	106
NheI	GCTAGC	1 cut(s)	197
NlaIII	CATG	2 cut(s)	425, 472
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	159
NspV	TTCGAA	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	17, 101, 130, 340
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	97
SaqAI	TTAA	2 cut(s)	81, 279
SatI	GCNGC	4 cut(s)	16, 100, 129, 339
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	6 cut(s)	75, 121, 259, 266, 325, 365
SfaNI	GCATC	1 cut(s)	184
SfuI	TTCGAA	1 cut(s)	243
Sse9I	AATT	2 cut(s)	245, 297
SsiI	CCGC	3 cut(s)	15, 100, 129
SspI	AATATT	2 cut(s)	206, 380
SspMI	CTAG	2 cut(s)	198, 320
TaaI	ACNGT	2 cut(s)	87, 229
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	2 cut(s)	48, 243
TasI	AATT	2 cut(s)	245, 297
TauI	GCSGC	3 cut(s)	18, 102, 131
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	2 cut(s)	81, 279
Tru9I	TTAA	2 cut(s)	81, 279
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	159
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	168
XapI	RAATTY	1 cut(s)	245
XspI	CTAG	2 cut(s)	198, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.