Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0007533

Physical Location & Seq

Genomic Coordinates Reverse (-)

20161688 .. 20162352

Gene Structure 665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG217200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCGGCCAAAATTGGGTCGTTCTGGCACAGCTTCTTGGAGAGGAGCAAGGAGAGGCTGCTCTCACGAAAAGGGTACTCGGATTTCGGGCTCAACAGCTCCGAATGCGGCGATGAGAGAGTCAAGTGCGGCTGGTTTGGGAAAATGTCTGATGGGTTGGTCGAGTTTTACAACAGCGTTCAGGAGGTTTCGGTTAAACAGTATCAAATGGGCCGCTCCGATCCTCGGAAAGCTTACTTCGCCGCCAAGATGGGCTTGTCGCTGGCGATTGTGTCACTACTCATATTTTTCAAGGAGCCCCTCAAAGATGCTAGCCAATATTCCATCTTGGCGATTCTCACCGTTGTCGTCGTTTTCGAATTCAGCATAGGTGCGACGTTGAACAAAGGGTTTAATCGTGCTTTGGGGACAATTTCGGCTGGAGGGCTGGCTCTAGGTATAGCAGAGTTGGCTGCAATGGCCGGAACTGGCAGGAGGTGTGATTGTAGTCAATATTGGATTTCTTCCAATGCTCTGCAAATGGGTCTCTCTCTTCGTGGTTTTGGAGAGAGGGGGGGGAATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0009987 GO:0010118 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0090332 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

188

Amino Acids

20.49

Weight (kDa)

9.23

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	69 - 156	3.3e-38	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007533)

Species	Orthologous Gene IDs
malus_domestica	MD16G1045200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0333421 RchiOBHm_Chr2g0126501 RchiOBHm_Chr3g0474511
rosa_laevigata	RLG00000033994
rosa_multiflora	Rmu_sc0000662.1_g000018 Rmu_sc0003575.1_g000006 Rmu_sc0022428.1_g000002 Rmu_sc0034830.1_g000001 Rmu_sc0040437.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186040
rosa_rugosa	Rorug07G0320900
rosa_samantha	Rh2AG320400 Rh2CG308600 Rh2DG348200 Rh3BG221700 Rh3CG216400 Rh3CG361800 Rh3DG217200 Rh5BG072300 Rh5BG163500 Rh7AG255900 Rh7BG441900 Rh7CG272300
rosa_wichuraiana	Rw1G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	216
AciI	CCGC	5 cut(s)	5, 108, 129, 214, 243
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	2 cut(s)	6, 459
AcsI	RAATTY	1 cut(s)	359
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	2 cut(s)	15, 225
AgsI	TTSAA	2 cut(s)	292, 382
AluBI	AGCT	3 cut(s)	33, 99, 233
AluI	AGCT	3 cut(s)	33, 99, 233
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	3 cut(s)	6, 211, 459
ApeKI	GCWGC	2 cut(s)	58, 452
ApoI	RAATTY	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	331
AsuII	TTCGAA	1 cut(s)	357
AsuNHI	GCTAGC	1 cut(s)	311
BanII	GRGCYC	2 cut(s)	93, 300
BbvI	GCAGC	2 cut(s)	45, 439
BccI	CCATC	3 cut(s)	146, 244, 332
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	2 cut(s)	312, 434
BisI	GCNGC	7 cut(s)	6, 59, 109, 130, 214, 243, 453
BlsI	GCNGC	7 cut(s)	7, 60, 110, 131, 215, 244, 454
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	297
BmsI	GCATC	1 cut(s)	298
BmtI	GCTAGC	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	441
Bpu14I	TTCGAA	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 225
Bse1I	ACTGG	1 cut(s)	472
Bse3DI	GCAATG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	224
BseLI	CCNNNNNNNGG	2 cut(s)	15, 225
BseMI	GCAATG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	45, 439
BshFI	GGCC	3 cut(s)	8, 213, 461
BsiSI	CCGG	1 cut(s)	462
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	2 cut(s)	15, 225
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	1 cut(s)	421
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	3 cut(s)	8, 213, 461
Bso31I	GGTCTC	1 cut(s)	530
Bsp119I	TTCGAA	1 cut(s)	357
Bsp1286I	GDGCHC	2 cut(s)	93, 300
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	5 cut(s)	5, 108, 129, 214, 243
BspANI	GGCC	3 cut(s)	8, 213, 461
BspLI	GGNNCC	1 cut(s)	297
BspOI	GCTAGC	1 cut(s)	315
BspPI	GGATC	1 cut(s)	215
BspT104I	TTCGAA	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	530
BsrBI	CCGCTC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	201, 343
Bst6I	CTCTTC	1 cut(s)	537
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	3 cut(s)	264, 313, 429
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 239, 449, 458
BstV1I	GCAGC	2 cut(s)	45, 439
BsuRI	GGCC	3 cut(s)	8, 213, 461
BtgZI	GCGATG	1 cut(s)	126
Cac8I	GCNNGC	3 cut(s)	264, 313, 429
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	1 cut(s)	564
CviQI	GTAC	1 cut(s)	76
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
EaeI	YGGCCR	2 cut(s)	6, 459
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Eco24I	GRGCYC	2 cut(s)	93, 300
Eco31I	GGTCTC	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	359
EcoT38I	GRGCYC	2 cut(s)	93, 300
FaeI	CATG	1 cut(s)	567
FaiI	YATR	4 cut(s)	284, 368, 440, 565
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	1 cut(s)	563
Fnu4HI	GCNGC	7 cut(s)	6, 59, 109, 130, 214, 243, 453
FriOI	GRGCYC	2 cut(s)	93, 300
Fsp4HI	GCNGC	7 cut(s)	6, 59, 109, 130, 214, 243, 453
FspBI	CTAG	2 cut(s)	312, 434
GluI	GCNGC	7 cut(s)	6, 59, 109, 130, 214, 243, 453
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	3 cut(s)	8, 213, 461
HapII	CCGG	1 cut(s)	462
Hin1II	CATG	1 cut(s)	567
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	2 cut(s)	120, 334
HpaII	CCGG	1 cut(s)	462
HphI	GGTGA	1 cut(s)	331
Hpy188I	TCNGA	5 cut(s)	82, 103, 151, 220, 228
Hpy188III	TCNNGA	2 cut(s)	66, 182
Hpy99I	CGWCG	2 cut(s)	353, 379
HpyCH4III	ACNGT	2 cut(s)	201, 343
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	2 cut(s)	455, 517
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 239, 449, 458
HpySE526I	ACGT	1 cut(s)	377
Hsp92II	CATG	1 cut(s)	567
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	4 cut(s)	45, 104, 221, 295
LpnPI	CCDG	9 cut(s)	10, 118, 167, 248, 405, 413, 453, 457, 475
Lsp1109I	GCAGC	2 cut(s)	45, 439
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	312, 434
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	1 cut(s)	273
MalI	GATC	1 cut(s)	222
MbiI	CCGCTC	1 cut(s)	216
MboI	GATC	1 cut(s)	220
MboII	GAAGA	2 cut(s)	495, 524
MhlI	GDGCHC	2 cut(s)	93, 300
MluCI	AATT	3 cut(s)	12, 359, 411
MlyI	GAGTC	1 cut(s)	129
MnlI	CCTC	8 cut(s)	36, 48, 178, 234, 311, 416, 468, 543
MseI	TTAA	2 cut(s)	195, 393
MspI	CCGG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	110
MwoI	GCNNNNNNNGC	4 cut(s)	105, 239, 449, 458
NdeII	GATC	1 cut(s)	220
NheI	GCTAGC	1 cut(s)	311
NlaIII	CATG	1 cut(s)	567
NlaIV	GGNNCC	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	273
NspV	TTCGAA	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PctI	GAATGC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	7 cut(s)	7, 60, 110, 131, 215, 244, 454
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	211
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	195, 393
SatI	GCNGC	7 cut(s)	6, 59, 109, 130, 214, 243, 453
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	129
SduI	GDGCHC	2 cut(s)	93, 300
SetI	ASST	8 cut(s)	35, 101, 189, 235, 373, 380, 439, 479
SfaNI	GCATC	1 cut(s)	298
SfuI	TTCGAA	1 cut(s)	357
Sse9I	AATT	3 cut(s)	12, 359, 411
SsiI	CCGC	5 cut(s)	5, 108, 129, 214, 243
SspI	AATATT	2 cut(s)	320, 494
SspMI	CTAG	2 cut(s)	312, 434
TaaI	ACNGT	2 cut(s)	201, 343
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	2 cut(s)	162, 357
TasI	AATT	3 cut(s)	12, 359, 411
TauI	GCSGC	5 cut(s)	8, 111, 132, 216, 245
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	2 cut(s)	195, 393
Tru9I	TTAA	2 cut(s)	195, 393
TseFI	GTSAC	1 cut(s)	273
TseI	GCWGC	2 cut(s)	58, 452
Tsp45I	GTSAC	1 cut(s)	273
XapI	RAATTY	1 cut(s)	359
XspI	CTAG	2 cut(s)	312, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.