Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007533

Physical Location & Seq

Genomic Coordinates Reverse (-)

44952102 .. 44953288

Gene Structure 1187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG361800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCGGCCAAAATTAGGTCGTTCCGGCACAGCTTCGCGGAGAGGAACAAGGAGAGGCTACTCTCACGAAAAGGGTACTCGGATTTCGGGCTCAACAGCTCGAAATGCGGCGATGAGAGAGTCAAGTGCGGCTGGTTTGGGAGAATGTCTGATGGGTTGGTCAACTTTTGCAACAACGTTCAGGAGGAGCCCCACAAAGATGCTAGCCAATATTCCATCTGGGCAATTCTCACCGTTGTCGTCGTTTTCGAATTCAACATAGGTGCGACGTTGAACAAAGGGTTTAATCGTGCTTTGGGGACAATTTCAACTGGAGGGCTAGCTCTAGGTGTAGCAGAGTTGGCTGTAATGGTCGGAAGTTGGCAGGAGGTTGTGATTGTAGTCGATATTTTCATAGCAGGGGAGGATCTCCACAAGCTGGTGGTGAAAAATTTCAAGGGTGTTGCTACTTCTTTGGAAGGTGTTGTTAATGGATATCTGCAATGTGTTGAGTACGAGAGAATTCCTTCGAAAATTCTCACATACCAAGCTTCTGATGAACCATTGTATAATGGATATAGAGCTACTATACAATCTTCAACCCAAGAGGAATCAAGAAGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0009987 GO:0010118 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0090332 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

201

Amino Acids

22.34

Weight (kDa)

7.66

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	62 - 134	3.8e-28	Aluminium activated malate transporter
FUSC_2	PF13515	70 - 134	4.8e-07	Fusaric acid resistance protein-like
ALMT	PF11744	133 - 198	4.1e-21	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007533)

Species	Orthologous Gene IDs
malus_domestica	MD16G1045200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0333421 RchiOBHm_Chr2g0126501 RchiOBHm_Chr3g0474511
rosa_laevigata	RLG00000033994
rosa_multiflora	Rmu_sc0000662.1_g000018 Rmu_sc0003575.1_g000006 Rmu_sc0022428.1_g000002 Rmu_sc0034830.1_g000001 Rmu_sc0040437.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186040
rosa_rugosa	Rorug07G0320900
rosa_samantha	Rh2AG320400 Rh2CG308600 Rh2DG348200 Rh3BG221700 Rh3CG216400 Rh3CG361800 Rh3DG217200 Rh5BG072300 Rh5BG163500 Rh7AG255900 Rh7BG441900 Rh7CG272300
rosa_wichuraiana	Rw1G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	418
AccII	CGCG	1 cut(s)	38
AciI	CCGC	4 cut(s)	5, 38, 108, 129
AclI	AACGTT	1 cut(s)	177
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	4 cut(s)	251, 430, 501, 513
AfaI	GTAC	2 cut(s)	77, 494
AfiI	CCNNNNNNNGG	2 cut(s)	15, 418
AgsI	TTSAA	5 cut(s)	256, 274, 309, 436, 579
AluBI	AGCT	6 cut(s)	33, 99, 323, 418, 530, 563
AluI	AGCT	6 cut(s)	33, 99, 323, 418, 530, 563
AlwI	GGATC	1 cut(s)	414
AoxI	GGCC	1 cut(s)	6
ApoI	RAATTY	4 cut(s)	251, 430, 501, 513
Asp700I	GAANNNNTTC	2 cut(s)	431, 505
AsuHPI	GGTGA	2 cut(s)	223, 436
AsuII	TTCGAA	2 cut(s)	249, 509
AsuNHI	GCTAGC	2 cut(s)	203, 319
BanII	GRGCYC	2 cut(s)	93, 192
BccI	CCATC	2 cut(s)	146, 224
BfaI	CTAG	3 cut(s)	204, 320, 326
BisI	GCNGC	3 cut(s)	6, 109, 130
BlsI	GCNGC	3 cut(s)	7, 110, 131
BmiI	GGNNCC	1 cut(s)	189
BmsI	GCATC	1 cut(s)	190
BmtI	GCTAGC	2 cut(s)	207, 323
BpmI	CTGGAG	1 cut(s)	333
Bpu14I	TTCGAA	2 cut(s)	249, 509
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 418
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	488
BseLI	CCNNNNNNNGG	2 cut(s)	15, 418
BseMI	GCAATG	1 cut(s)	488
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	2 cut(s)	15, 418
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	8
Bsp119I	TTCGAA	2 cut(s)	249, 509
Bsp1286I	GDGCHC	2 cut(s)	93, 192
Bsp143I	GATC	1 cut(s)	406
BspACI	CCGC	4 cut(s)	5, 38, 108, 129
BspANI	GGCC	1 cut(s)	8
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	189
BspOI	GCTAGC	2 cut(s)	207, 323
BspPI	GGATC	1 cut(s)	414
BspT104I	TTCGAA	2 cut(s)	249, 509
BsrDI	GCAATG	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	316
BssMI	GATC	1 cut(s)	406
Bst4CI	ACNGT	1 cut(s)	235
BstBI	TTCGAA	2 cut(s)	249, 509
BstC8I	GCNNGC	2 cut(s)	205, 321
BstFNI	CGCG	1 cut(s)	38
BstKTI	GATC	1 cut(s)	409
BstMBI	GATC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 341
BstUI	CGCG	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	1 cut(s)	8
BtgZI	GCGATG	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	205, 321
Csp6I	GTAC	2 cut(s)	76, 493
CviQI	GTAC	2 cut(s)	76, 493
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
EaeI	YGGCCR	1 cut(s)	6
Eco24I	GRGCYC	2 cut(s)	93, 192
Eco32I	GATATC	1 cut(s)	476
EcoRI	GAATTC	2 cut(s)	251, 501
EcoRV	GATATC	1 cut(s)	476
EcoT38I	GRGCYC	2 cut(s)	93, 192
FaiI	YATR	6 cut(s)	260, 395, 523, 549, 558, 569
FaqI	GGGAC	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	6, 109, 130
FriOI	GRGCYC	2 cut(s)	93, 192
Fsp4HI	GCNGC	3 cut(s)	6, 109, 130
FspBI	CTAG	3 cut(s)	204, 320, 326
GluI	GCNGC	3 cut(s)	6, 109, 130
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	528
HinfI	GANTC	2 cut(s)	120, 590
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	2 cut(s)	223, 436
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	4 cut(s)	82, 151, 356, 535
Hpy188III	TCNNGA	3 cut(s)	66, 182, 594
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	2 cut(s)	245, 271
HpyAV	CCTTC	3 cut(s)	452, 516, 591
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	177, 269
HpyCH4V	TGCA	2 cut(s)	171, 481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 341
HpySE526I	ACGT	2 cut(s)	177, 269
Kzo9I	GATC	1 cut(s)	406
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	8 cut(s)	38, 118, 167, 205, 297, 350, 384, 404
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	3 cut(s)	204, 320, 326
MaeII	ACGT	2 cut(s)	177, 269
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	1 cut(s)	567
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	2 cut(s)	93, 192
MluCI	AATT	7 cut(s)	12, 225, 251, 303, 430, 501, 513
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	7 cut(s)	36, 48, 178, 308, 361, 397, 580
MroXI	GAANNNNTTC	2 cut(s)	431, 505
MseI	TTAA	2 cut(s)	285, 468
MslI	CAYNNNNRTG	1 cut(s)	198
MspI	CCGG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	105, 341
NdeII	GATC	1 cut(s)	406
NheI	GCTAGC	2 cut(s)	203, 319
NlaIV	GGNNCC	1 cut(s)	189
NspV	TTCGAA	2 cut(s)	249, 509
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PdmI	GAANNNNTTC	2 cut(s)	431, 505
PfeI	GAWTC	1 cut(s)	590
PflMI	CCANNNNNTGG	1 cut(s)	418
PkrI	GCNGC	3 cut(s)	7, 110, 131
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Psp1406I	AACGTT	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	2 cut(s)	77, 494
RsaNI	GTAC	2 cut(s)	76, 493
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	285, 468
SatI	GCNGC	3 cut(s)	6, 109, 130
Sau3AI	GATC	1 cut(s)	406
SchI	GAGTC	1 cut(s)	129
SduI	GDGCHC	2 cut(s)	93, 192
SfaNI	GCATC	1 cut(s)	190
SfuI	TTCGAA	2 cut(s)	249, 509
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	7 cut(s)	12, 225, 251, 303, 430, 501, 513
SsiI	CCGC	4 cut(s)	5, 38, 108, 129
SspI	AATATT	1 cut(s)	212
SspMI	CTAG	3 cut(s)	204, 320, 326
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	2 cut(s)	180, 272
TaqI	TCGA	4 cut(s)	101, 249, 384, 509
TasI	AATT	7 cut(s)	12, 225, 251, 303, 430, 501, 513
TauI	GCSGC	3 cut(s)	8, 111, 132
TfiI	GAWTC	1 cut(s)	590
Tru1I	TTAA	2 cut(s)	285, 468
Tru9I	TTAA	2 cut(s)	285, 468
TspDTI	ATGAA	2 cut(s)	382, 552
Van91I	CCANNNNNTGG	1 cut(s)	418
XapI	RAATTY	4 cut(s)	251, 430, 501, 513
XmnI	GAANNNNTTC	2 cut(s)	431, 505
XspI	CTAG	3 cut(s)	204, 320, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.