Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007533

Physical Location & Seq

Genomic Coordinates Reverse (-)

25465495 .. 25466062

Gene Structure 568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00186040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCGGCCAAAATTGGGTCGTTTTGGCACGGCTTCGGGGAGAGGAGCAAGGAGAGGCTGCTCTCACGAAAAGGGTACTCGGATTTCAAGCTCAACGGCATGGAATGCGGCGATGAGAGAGTCAAGTGCGACTTGTATGGGAGAATGTCCGATGGGTTGGTCAACTTTTGCAACAACGTTCGGGAGGTTTACGTTAAACCGTATCAAATGGGCCGCTCCGATACTCGAAAGCTTACTTCGCCGATAGGCTTTGTCTCGGCGCTTGTGTCACTACTCATATTTTTTAAGGAGCCCTTCAAAGATGCTAGCCAATATTCCATCCGGGCGATTCTCACCGTTGTCGTCATTTTCGAATTCAGCATAGGTGCGACGTTGAACAAAGGGTTTAATCATGCTTTGGGGATAATTTCGGCTGGAGGACTAGCTCTAGGTGTAGTAGAGTTGGTTGTAATGGCTAGAAGTTGGCGGAGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0009987 GO:0010118 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0090332 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

158

Amino Acids

17.64

Weight (kDa)

9.63

Isoelectric Point (pI)

28.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	69 - 154	2.9e-27	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007533)

Species	Orthologous Gene IDs
malus_domestica	MD16G1045200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0333421 RchiOBHm_Chr2g0126501 RchiOBHm_Chr3g0474511
rosa_laevigata	RLG00000033994
rosa_multiflora	Rmu_sc0000662.1_g000018 Rmu_sc0003575.1_g000006 Rmu_sc0022428.1_g000002 Rmu_sc0034830.1_g000001 Rmu_sc0040437.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186040
rosa_rugosa	Rorug07G0320900
rosa_samantha	Rh2AG320400 Rh2CG308600 Rh2DG348200 Rh3BG221700 Rh3CG216400 Rh3CG361800 Rh3DG217200 Rh5BG072300 Rh5BG163500 Rh7AG255900 Rh7BG441900 Rh7CG272300
rosa_wichuraiana	Rw1G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	216
AciI	CCGC	4 cut(s)	5, 108, 214, 466
AclI	AACGTT	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	353
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	3 cut(s)	88, 298, 376
AluBI	AGCT	3 cut(s)	91, 232, 425
AluI	AGCT	3 cut(s)	91, 232, 425
Alw26I	GTCTC	1 cut(s)	259
AoxI	GGCC	2 cut(s)	6, 211
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	325
AsuII	TTCGAA	1 cut(s)	351
AsuNHI	GCTAGC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	2 cut(s)	146, 326
BceAI	ACGGC	2 cut(s)	46, 112
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	4 cut(s)	306, 422, 428, 456
BfoI	RGCGCY	1 cut(s)	263
BisI	GCNGC	4 cut(s)	6, 59, 109, 214
BlsI	GCNGC	4 cut(s)	7, 60, 110, 215
Bme1390I	CCNGG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	292
BmtI	GCTAGC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	435
Bpu14I	TTCGAA	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	45
BshFI	GGCC	2 cut(s)	8, 213
BsiSI	CCGG	1 cut(s)	322
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	8, 213
Bsp119I	TTCGAA	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	294
BspACI	CCGC	4 cut(s)	5, 108, 214, 466
BspANI	GGCC	2 cut(s)	8, 213
BspLI	GGNNCC	1 cut(s)	291
BspOI	GCTAGC	1 cut(s)	309
BspT104I	TTCGAA	1 cut(s)	351
BsrBI	CCGCTC	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	201, 337
BstAPI	GCANNNNNTGC	1 cut(s)	105
BstBI	TTCGAA	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	307
BstF5I	GGATG	1 cut(s)	318
BstH2I	RGCGCY	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 238
BstSCI	CCNGG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	8, 213
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	318
Cac8I	GCNNGC	1 cut(s)	307
CfoI	GCGC	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	2 cut(s)	100, 392
CviQI	GTAC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	353
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	2 cut(s)	103, 395
FaiI	YATR	5 cut(s)	101, 138, 278, 362, 393
FalI	AAGNNNNNCTT	4 cut(s)	116, 148, 278, 310
FatI	CATG	2 cut(s)	99, 391
Fnu4HI	GCNGC	4 cut(s)	6, 59, 109, 214
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	4 cut(s)	6, 59, 109, 214
FspBI	CTAG	4 cut(s)	306, 422, 428, 456
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	4 cut(s)	6, 59, 109, 214
GsuI	CTGGAG	1 cut(s)	435
HaeII	RGCGCY	1 cut(s)	263
HaeIII	GGCC	2 cut(s)	8, 213
HapII	CCGG	1 cut(s)	322
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	2 cut(s)	103, 395
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	2 cut(s)	120, 328
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	2 cut(s)	163, 190
Hpy188I	TCNGA	3 cut(s)	82, 151, 220
Hpy188III	TCNNGA	2 cut(s)	66, 182
Hpy8I	GTNNAC	2 cut(s)	163, 190
Hpy99I	CGWCG	1 cut(s)	373
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	2 cut(s)	201, 337
HpyCH4IV	ACGT	3 cut(s)	177, 192, 371
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 238
HpySE526I	ACGT	3 cut(s)	177, 192, 371
Hsp92II	CATG	2 cut(s)	103, 395
HspAI	GCGC	1 cut(s)	260
LmnI	GCTCC	3 cut(s)	45, 221, 289
LpnPI	CCDG	2 cut(s)	335, 399
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	4 cut(s)	306, 422, 428, 456
MaeII	ACGT	3 cut(s)	177, 192, 371
MaeIII	GTNAC	1 cut(s)	267
MbiI	CCGCTC	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	3 cut(s)	12, 353, 405
MlyI	GAGTC	1 cut(s)	129
MnlI	CCTC	5 cut(s)	36, 48, 178, 410, 462
MseI	TTAA	3 cut(s)	195, 285, 387
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	1 cut(s)	323
Mva1269I	GAATGC	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	105, 238
NciI	CCSGG	1 cut(s)	323
NheI	GCTAGC	1 cut(s)	305
NlaIII	CATG	2 cut(s)	103, 395
NlaIV	GGNNCC	1 cut(s)	291
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PctI	GAATGC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	328
PkrI	GCNGC	4 cut(s)	7, 60, 110, 215
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Psp1406I	AACGTT	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	211
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SaqAI	TTAA	3 cut(s)	195, 285, 387
SatI	GCNGC	4 cut(s)	6, 59, 109, 214
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	1 cut(s)	292
SfuI	TTCGAA	1 cut(s)	351
Sse9I	AATT	3 cut(s)	12, 353, 405
SsiI	CCGC	4 cut(s)	5, 108, 214, 466
SspI	AATATT	1 cut(s)	314
SspMI	CTAG	4 cut(s)	306, 422, 428, 456
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	201, 337
TaiI	ACGT	3 cut(s)	180, 195, 374
TaqI	TCGA	2 cut(s)	226, 351
TasI	AATT	3 cut(s)	12, 353, 405
TauI	GCSGC	3 cut(s)	8, 111, 216
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	3 cut(s)	195, 285, 387
Tru9I	TTAA	3 cut(s)	195, 285, 387
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	267
XapI	RAATTY	1 cut(s)	353
XspI	CTAG	4 cut(s)	306, 422, 428, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.