Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007533

Physical Location & Seq

Genomic Coordinates Reverse (-)

38574284 .. 38637370

Gene Structure 63087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG308600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAAAAGGCTATTCTGTGCTGTTGATGGACCACTGAAGAGACGTGAAATTTCCCAGGAAGACCACCCTTTAAGTCTTGGTAAGGCTAGTGTTTGGCATCAGTACTTTCAGACTACAGAGATTGCCGAGCAGATAGACCGTGATTTACCACACACACACCCAGATTTGAAATTCTTCTCAGGAGACTCATCATTCAGTAGAAAACACAGGGAAGCACTGAGAAATATTCTTCTCGTGTTTGCAAAACTAAATCCAGCAATCCGTTATGTGCAAGGCATGAATGAGGTCTTGGCACCAATATACTATGTATTCAGTACTGGCCTTAATGAGCAAAATGCTATTGCACAAGTAGATTATTTTTTATCTGTATCTTCTTTTCGTGCCCAAGTGGTTATAAAGAGCTACAAAACAGACAAGGTATGCCAATGCCAACCCCAACAACCTCTCACCAGAAGGGTAAAGGAGATATGGCGGCCAAAATTGGGTCGTTTCGGCACAGTTTTGTGGAGAAGAGCAAGGAGAGGCTGCCCTCATGAAAAGGGTACTCGAATTTCAGGCTCAACAGCTCGGAATGCGGCGATGGGAGAGTCAAGTGCGGCTGGTTTGGGAGAATATCTGATGGGTTGGTCAACTTTTGCAACAACGTTCAGGAGGTTTCTGTTAAACTGTATCAAATGGGTCGCTCCGATACTTGGAAAGCTTACTTCGCCGATGGGCTTGTCGCTGGCGATTGTGTCACTGCTCATATTTTTCAAGGATCCCCTCAAAGATCCTAGCCAATATTCCATCTGGGCGATTCTCACCGTTGTCGTCGTTTTCGAATTCAACATAAGTGCGACGTTGAACAAAGGGTTTAATCGTGCTTTGGGGACAATTTCGGCTGGAGGGCTAGCTCTAGGTGTAGCAGAGTTGGCTGTAATGGCCGGAAGTTGGCAGGAGGTTGTGATTGTAGTCAATATTTTCATAGCAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

324

Amino Acids

36.22

Weight (kDa)

9.79

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	39 - 103	6.8e-13	Rab-GTPase-TBC domain
ALMT	PF11744	238 - 324	2e-33	Aluminium activated malate transporter
FUSC_2	PF13515	260 - 322	1.3e-06	Fusaric acid resistance protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007533)

Species	Orthologous Gene IDs
malus_domestica	MD16G1045200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0333421 RchiOBHm_Chr2g0126501 RchiOBHm_Chr3g0474511
rosa_laevigata	RLG00000033994
rosa_multiflora	Rmu_sc0000662.1_g000018 Rmu_sc0003575.1_g000006 Rmu_sc0022428.1_g000002 Rmu_sc0034830.1_g000001 Rmu_sc0040437.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186040
rosa_rugosa	Rorug07G0320900
rosa_samantha	Rh2AG320400 Rh2CG308600 Rh2DG348200 Rh3BG221700 Rh3CG216400 Rh3CG361800 Rh3DG217200 Rh5BG072300 Rh5BG163500 Rh7AG255900 Rh7BG441900 Rh7CG272300
rosa_wichuraiana	Rw1G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
Acc36I	ACCTGC	1 cut(s)	959
AccB1I	GGYRCC	1 cut(s)	292
AciI	CCGC	3 cut(s)	472, 575, 596
AclI	AACGTT	1 cut(s)	644
AclWI	GGATC	3 cut(s)	752, 764, 765
AcoI	YGGCCR	2 cut(s)	473, 921
AcsI	RAATTY	4 cut(s)	48, 170, 549, 821
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	3 cut(s)	104, 316, 544
AfiI	CCNNNNNNNGG	3 cut(s)	482, 692, 930
AgsI	TTSAA	4 cut(s)	169, 754, 826, 844
AjiI	CACGTC	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	54
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	4 cut(s)	402, 566, 700, 893
AluI	AGCT	4 cut(s)	402, 566, 700, 893
Alw26I	GTCTC	2 cut(s)	34, 177
AlwI	GGATC	3 cut(s)	752, 764, 765
AoxI	GGCC	3 cut(s)	319, 473, 921
ApeKI	GCWGC	1 cut(s)	525
ApoI	RAATTY	4 cut(s)	48, 170, 549, 821
Asp700I	GAANNNNTTC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	439, 793
AsuII	TTCGAA	1 cut(s)	819
AsuNHI	GCTAGC	1 cut(s)	889
AvaII	GGWCC	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	385
BamHI	GGATCC	1 cut(s)	757
BanI	GGYRCC	1 cut(s)	292
BauI	CACGAG	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	512
BccI	CCATC	5 cut(s)	20, 574, 613, 706, 794
BciT130I	CCWGG	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	34, 177
BfaI	CTAG	4 cut(s)	87, 774, 890, 896
BfmI	CTRYAG	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	959
BisI	GCNGC	4 cut(s)	473, 526, 576, 597
BlsI	GCNGC	4 cut(s)	474, 527, 577, 598
BmcAI	AGTACT	2 cut(s)	104, 316
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	29
BmgBI	CACGTC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	2 cut(s)	294, 759
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	106
BmtI	GCTAGC	1 cut(s)	893
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	903
Bpu14I	TTCGAA	1 cut(s)	819
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	3 cut(s)	482, 692, 930
Bse1I	ACTGG	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	3 cut(s)	482, 692, 930
BseMII	CTCAG	2 cut(s)	192, 209
BseNI	ACTGG	1 cut(s)	322
BseSI	GKGCMC	1 cut(s)	385
BseXI	GCAGC	1 cut(s)	512
BshFI	GGCC	3 cut(s)	321, 475, 923
BshNI	GGYRCC	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	924
BslFI	GGGAC	1 cut(s)	883
BslI	CCNNNNNNNGG	3 cut(s)	482, 692, 930
BsmAI	GTCTC	2 cut(s)	34, 177
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	883
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	3 cut(s)	321, 475, 923
Bsp119I	TTCGAA	1 cut(s)	819
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	2 cut(s)	757, 769
BspACI	CCGC	3 cut(s)	472, 575, 596
BspANI	GGCC	3 cut(s)	321, 475, 923
BspCNI	CTCAG	2 cut(s)	191, 210
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	2 cut(s)	294, 759
BspMI	ACCTGC	1 cut(s)	959
BspOI	GCTAGC	1 cut(s)	893
BspPI	GGATC	3 cut(s)	752, 764, 765
BspQI	GCTCTTC	1 cut(s)	505
BspT104I	TTCGAA	1 cut(s)	819
BspT107I	GGYRCC	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	757, 769
BssSI	CACGAG	1 cut(s)	233
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	4 cut(s)	140, 499, 668, 805
Bst6I	CTCTTC	2 cut(s)	32, 505
BstBI	TTCGAA	1 cut(s)	819
BstC8I	GCNNGC	2 cut(s)	726, 891
BstDEI	CTNAG	2 cut(s)	178, 218
BstKTI	GATC	2 cut(s)	760, 772
BstMAI	GTCTC	2 cut(s)	34, 177
BstMBI	GATC	2 cut(s)	757, 769
BstMWI	GCNNNNNNNGC	4 cut(s)	572, 706, 911, 920
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	385
BstV1I	GCAGC	1 cut(s)	512
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	2 cut(s)	757, 769
BstYI	RGATCY	2 cut(s)	757, 769
BsuRI	GGCC	3 cut(s)	321, 475, 923
BtgZI	GCGATG	1 cut(s)	593
BtrI	CACGTC	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	737
BtsIMutI	CAGTG	3 cut(s)	32, 215, 737
BveI	ACCTGC	1 cut(s)	959
Cac8I	GCNNGC	2 cut(s)	726, 891
CciI	TCATGA	1 cut(s)	532
Cfr13I	GGNCC	1 cut(s)	29
Csp6I	GTAC	3 cut(s)	103, 315, 543
CviAII	CATG	2 cut(s)	277, 533
CviQI	GTAC	3 cut(s)	103, 315, 543
DdeI	CTNAG	2 cut(s)	178, 218
DpnI	GATC	2 cut(s)	759, 771
DpnII	GATC	2 cut(s)	757, 769
EaeI	YGGCCR	2 cut(s)	473, 921
Eam1104I	CTCTTC	2 cut(s)	32, 505
EarI	CTCTTC	2 cut(s)	32, 505
Eco47I	GGWCC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	821
EcoRII	CCWGG	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	2 cut(s)	280, 536
FaqI	GGGAC	1 cut(s)	883
FatI	CATG	2 cut(s)	276, 532
Fnu4HI	GCNGC	4 cut(s)	473, 526, 576, 597
Fsp4HI	GCNGC	4 cut(s)	473, 526, 576, 597
FspBI	CTAG	4 cut(s)	87, 774, 890, 896
GluI	GCNGC	4 cut(s)	473, 526, 576, 597
GsuI	CTGGAG	1 cut(s)	903
HaeIII	GGCC	3 cut(s)	321, 475, 923
HapII	CCGG	1 cut(s)	924
Hin1II	CATG	2 cut(s)	280, 536
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	3 cut(s)	185, 587, 796
HpaII	CCGG	1 cut(s)	924
HphI	GGTGA	2 cut(s)	439, 793
Hpy166II	GTNNAC	1 cut(s)	630
Hpy188I	TCNGA	4 cut(s)	111, 570, 618, 687
Hpy188III	TCNNGA	3 cut(s)	180, 533, 649
Hpy8I	GTNNAC	1 cut(s)	630
Hpy99I	CGWCG	2 cut(s)	815, 841
HpyAV	CCTTC	1 cut(s)	447
HpyCH4III	ACNGT	4 cut(s)	140, 499, 668, 805
HpyCH4IV	ACGT	3 cut(s)	43, 644, 839
HpyCH4V	TGCA	4 cut(s)	242, 271, 344, 638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	572, 706, 911, 920
HpyF3I	CTNAG	2 cut(s)	178, 218
HpySE526I	ACGT	3 cut(s)	43, 644, 839
Hsp92II	CATG	2 cut(s)	280, 536
Kzo9I	GATC	2 cut(s)	757, 769
LguI	GCTCTTC	1 cut(s)	505
LmnI	GCTCC	1 cut(s)	688
Lsp1109I	GCAGC	1 cut(s)	512
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	4 cut(s)	87, 774, 890, 896
MaeII	ACGT	3 cut(s)	43, 644, 839
MaeIII	GTNAC	1 cut(s)	735
MalI	GATC	2 cut(s)	759, 771
MboI	GATC	2 cut(s)	757, 769
MboII	GAAGA	6 cut(s)	49, 71, 166, 221, 363, 522
MflI	RGATCY	2 cut(s)	757, 769
MhlI	GDGCHC	1 cut(s)	385
MluCI	AATT	6 cut(s)	48, 170, 479, 549, 821, 873
MlyI	GAGTC	2 cut(s)	179, 596
MnlI	CCTC	8 cut(s)	277, 453, 515, 540, 645, 773, 878, 931
MroXI	GAANNNNTTC	1 cut(s)	173
MseI	TTAA	4 cut(s)	71, 324, 662, 855
MspI	CCGG	1 cut(s)	924
MspR9I	CCNGG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	4 cut(s)	572, 706, 911, 920
NdeII	GATC	2 cut(s)	757, 769
NheI	GCTAGC	1 cut(s)	889
NlaIII	CATG	2 cut(s)	280, 536
NlaIV	GGNNCC	2 cut(s)	294, 759
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	735
NspV	TTCGAA	1 cut(s)	819
PagI	TCATGA	1 cut(s)	532
PciSI	GCTCTTC	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	816
PctI	GAATGC	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	796
PkrI	GCNGC	4 cut(s)	474, 527, 577, 598
PleI	GAGTC	2 cut(s)	179, 595
PpsI	GAGTC	2 cut(s)	179, 595
PsiI	TTATAA	1 cut(s)	395
Psp1406I	AACGTT	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	294, 759
PspPI	GGNCC	1 cut(s)	29
PsuI	RGATCY	2 cut(s)	757, 769
RsaI	GTAC	3 cut(s)	104, 316, 544
RsaNI	GTAC	3 cut(s)	103, 315, 543
SapI	GCTCTTC	1 cut(s)	505
SaqAI	TTAA	4 cut(s)	71, 324, 662, 855
SatI	GCNGC	4 cut(s)	473, 526, 576, 597
Sau3AI	GATC	2 cut(s)	757, 769
Sau96I	GGNCC	1 cut(s)	29
ScaI	AGTACT	2 cut(s)	104, 316
SchI	GAGTC	2 cut(s)	179, 596
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	385
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	114
SfuI	TTCGAA	1 cut(s)	819
SinI	GGWCC	1 cut(s)	29
Sse9I	AATT	6 cut(s)	48, 170, 479, 549, 821, 873
SsiI	CCGC	3 cut(s)	472, 575, 596
SspI	AATATT	3 cut(s)	226, 782, 958
SspMI	CTAG	4 cut(s)	87, 774, 890, 896
StyD4I	CCNGG	1 cut(s)	54
TaaI	ACNGT	4 cut(s)	140, 499, 668, 805
TaiI	ACGT	3 cut(s)	46, 647, 842
TaqI	TCGA	2 cut(s)	547, 819
TasI	AATT	6 cut(s)	48, 170, 479, 549, 821, 873
TatI	WGTACW	2 cut(s)	102, 314
TauI	GCSGC	3 cut(s)	475, 578, 599
TfiI	GAWTC	1 cut(s)	796
Tru1I	TTAA	4 cut(s)	71, 324, 662, 855
Tru9I	TTAA	4 cut(s)	71, 324, 662, 855
TscAI	CASTG	3 cut(s)	39, 222, 744
TseFI	GTSAC	1 cut(s)	735
TseI	GCWGC	1 cut(s)	525
Tsp45I	GTSAC	1 cut(s)	735
TspDTI	ATGAA	4 cut(s)	17, 293, 549, 952
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	3 cut(s)	39, 222, 744
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	4 cut(s)	48, 170, 549, 821
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	4 cut(s)	87, 774, 890, 896
ZrmI	AGTACT	2 cut(s)	104, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.