Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007533

Physical Location & Seq

Genomic Coordinates Reverse (-)

5916677 .. 5917045

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG072300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCGGCCAAAATTGGGTCATTCCGGCACAGCTTCTGGAGAGGAGCAAGGAGAGGCTGCTCTCACGAAAAGGGTACTCGGATTTCGGGCTCAACAGCTCCGAATGCGGCGATGAGAGAGTCAAGTGCGGCTGGTTTGGGAAAATGTCCGATGGGTTGGTCGAGTTTTGCAACAGCGTTCAGGAGGTTTCGGTTAAACTGTATCAAATGGGCCGCTCCGATCCTCGGAAAGCTTACTTCGCCGCCAAGATGGGCTTGTCGCTGGCGATTGTGTCACTGCTCATATTTTTCAAGGAGCCCCTCAAAGATGCTAGCCAATATTCCATCTTGGCGATTCTCACCGTTGTCGTCGTTTTCGAATTCAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.56

Weight (kDa)

11.63

Isoelectric Point (pI)

66.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007533)

Species	Orthologous Gene IDs
malus_domestica	MD16G1045200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0333421 RchiOBHm_Chr2g0126501 RchiOBHm_Chr3g0474511
rosa_laevigata	RLG00000033994
rosa_multiflora	Rmu_sc0000662.1_g000018 Rmu_sc0003575.1_g000006 Rmu_sc0022428.1_g000002 Rmu_sc0034830.1_g000001 Rmu_sc0040437.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186040
rosa_rugosa	Rorug07G0320900
rosa_samantha	Rh2AG320400 Rh2CG308600 Rh2DG348200 Rh3BG221700 Rh3CG216400 Rh3CG361800 Rh3DG217200 Rh5BG072300 Rh5BG163500 Rh7AG255900 Rh7BG441900 Rh7CG272300
rosa_wichuraiana	Rw1G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	215
AciI	CCGC	5 cut(s)	5, 107, 128, 213, 242
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	358
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	2 cut(s)	15, 224
AgsI	TTSAA	1 cut(s)	291
AluBI	AGCT	3 cut(s)	33, 98, 232
AluI	AGCT	3 cut(s)	33, 98, 232
AlwI	GGATC	1 cut(s)	214
AlwNI	CAGNNNCTG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	6, 210
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	330
AsuII	TTCGAA	1 cut(s)	356
AsuNHI	GCTAGC	1 cut(s)	310
BanII	GRGCYC	2 cut(s)	92, 299
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	3 cut(s)	145, 243, 331
BfaI	CTAG	1 cut(s)	311
BisI	GCNGC	6 cut(s)	6, 58, 108, 129, 213, 242
BlsI	GCNGC	6 cut(s)	7, 59, 109, 130, 214, 243
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	296
BmsI	GCATC	1 cut(s)	297
BmtI	GCTAGC	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	58
Bpu14I	TTCGAA	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 224
BseDI	CCNNGG	1 cut(s)	223
BseLI	CCNNNNNNNGG	2 cut(s)	15, 224
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	44
BshFI	GGCC	2 cut(s)	8, 212
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	15, 224
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	8, 212
Bsp119I	TTCGAA	1 cut(s)	356
Bsp1286I	GDGCHC	2 cut(s)	92, 299
Bsp143I	GATC	1 cut(s)	219
BspACI	CCGC	5 cut(s)	5, 107, 128, 213, 242
BspANI	GGCC	2 cut(s)	8, 212
BspLI	GGNNCC	1 cut(s)	296
BspOI	GCTAGC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	214
BspT104I	TTCGAA	1 cut(s)	356
BsrBI	CCGCTC	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	200, 342
BstBI	TTCGAA	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	263, 312
BstKTI	GATC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 238
BstV1I	GCAGC	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	8, 212
BtgZI	GCGATG	1 cut(s)	125
BtsI	GCAGTG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	274
Cac8I	GCNNGC	2 cut(s)	263, 312
CaiI	CAGNNNCTG	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	75
CviQI	GTAC	1 cut(s)	75
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
EaeI	YGGCCR	1 cut(s)	6
Eco24I	GRGCYC	2 cut(s)	92, 299
EcoRI	GAATTC	1 cut(s)	358
EcoT38I	GRGCYC	2 cut(s)	92, 299
FaiI	YATR	2 cut(s)	283, 367
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
Fnu4HI	GCNGC	6 cut(s)	6, 58, 108, 129, 213, 242
FriOI	GRGCYC	2 cut(s)	92, 299
Fsp4HI	GCNGC	6 cut(s)	6, 58, 108, 129, 213, 242
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	6 cut(s)	6, 58, 108, 129, 213, 242
GsuI	CTGGAG	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	8, 212
HapII	CCGG	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	2 cut(s)	119, 333
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	330
Hpy188I	TCNGA	5 cut(s)	81, 102, 150, 219, 227
Hpy188III	TCNNGA	3 cut(s)	37, 65, 181
Hpy99I	CGWCG	1 cut(s)	352
HpyCH4III	ACNGT	2 cut(s)	200, 342
HpyCH4V	TGCA	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 238
Kzo9I	GATC	1 cut(s)	219
LmnI	GCTCC	4 cut(s)	44, 103, 220, 294
LpnPI	CCDG	5 cut(s)	22, 38, 117, 166, 247
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	1 cut(s)	311
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	1 cut(s)	221
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	1 cut(s)	219
MhlI	GDGCHC	2 cut(s)	92, 299
MluCI	AATT	2 cut(s)	12, 358
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	5 cut(s)	35, 47, 177, 233, 310
MseI	TTAA	1 cut(s)	194
MspI	CCGG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	104, 238
NdeII	GATC	1 cut(s)	219
NheI	GCTAGC	1 cut(s)	310
NlaIV	GGNNCC	1 cut(s)	296
NmuCI	GTSAC	1 cut(s)	272
NspV	TTCGAA	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	353
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	333
PkrI	GCNGC	6 cut(s)	7, 59, 109, 130, 214, 243
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	296
PspPI	GGNCC	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	36
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	6 cut(s)	6, 58, 108, 129, 213, 242
Sau3AI	GATC	1 cut(s)	219
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	2 cut(s)	92, 299
SetI	ASST	4 cut(s)	35, 100, 188, 234
SfaNI	GCATC	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	356
Sse9I	AATT	2 cut(s)	12, 358
SsiI	CCGC	5 cut(s)	5, 107, 128, 213, 242
SspI	AATATT	1 cut(s)	319
SspMI	CTAG	1 cut(s)	311
TaaI	ACNGT	2 cut(s)	200, 342
TaqI	TCGA	2 cut(s)	161, 356
TasI	AATT	2 cut(s)	12, 358
TauI	GCSGC	5 cut(s)	8, 110, 131, 215, 244
TfiI	GAWTC	1 cut(s)	333
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	272
TspRI	CASTG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	358
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.