Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007533

Physical Location & Seq

Genomic Coordinates Forward (+)

32936002 .. 32938160

Gene Structure 2159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0320900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGTCTAACGATCCCTCCACCACCACCTCATCCATTGCTGGAGACACCACCACGGCAACCACAGACGATACCATCAGCACCGCCACCACCATCCCAGAAGACACCACCAGTTCGACCGCCCTAACCTCCACCACCAAAGCCTCAACCTCATTAGACTCCTCCTCATCCTCCACCTCCTCCAAACCCCAAGCAGCAGCAATCCAATCCCTCTCCGCCATCCTCCCCTCCCTCTCCTCCACCTCCTACACCACTGCCCGTTCCCTCCTCCACGACCCCCACACATCCTCCCAAATCTCCTCCCTCCTCAAACAACCCGACTCCGGCGCCGGCGACAACAACCTCTGCCGCTGGCTCTACGACACCTTCCAGTCCTCCGATCCCGACCTCCAGCTCCTCGTCCTCCGCTTCCTCCCCCTCGTCGCCGGCCTCTACCTCTCCCGCGTCCCCCTCCGCATCCCCCTCGCCGGCTTCGAGGCCGTCCTCCTGGCCCTCTACGCTCACGAGACCGCCTCCCGCGACGGTCATTCCGTCACCGTCAACGTTCCCGACGTGTCCCACCCCAGCCTCTACCACGAAACCAAGGCCGCCGCCGTCAAGAGCAACGCCACTGGGCTCAACTTGGCCGTTATATCTCCCAGCTTGGAACCTCACGGCACCGTCAGATCCACACGGAGGGCTAGGATCGTCGGGGTCGCGCTGGAATTGTACTACACCAAAATATACGAAATGCCAGTCGAGTCCAAGATAGATTTCTGCGAGTTTTGTAAGGTTTGGGCTGGTCAGGACGGAGAAATGTACAAACAGGACGTGGAAAAGAGTAGTGGAAACAAAATAAACGAGGGAAAGGAGGAGGGTAGTTTGGGGAATAATGATAAGGAAGGGATGGGGAGGGTTCCCTTGCCATGCGAATTGCTGCAACCAGTTTTGAGGATTTTAGGGCACTGCCTTTTGTGCCCTAATCAGAACAAGAAGCTCACAGATAAGGCGAGTGAAGCGTGTAGGAGCCTGTATGCGAGGTCTATGCATGACATCAATCCCAAGGCAATTTTGGCTACTGGGAGTTTGCTTAGGCTAGCTAACATGGCTTTCGACTCCACCAAGCAAGACCTTTTAGATCCAACTGACGTTCCCAAATCTAGAGTCATCTCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0009987 GO:0010118 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0090332 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

384

Amino Acids

41.25

Weight (kDa)

5.87

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hyccin	PF09790	82 - 364	1.8e-47	Hyccin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007533)

Species	Orthologous Gene IDs
malus_domestica	MD16G1045200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0333421 RchiOBHm_Chr2g0126501 RchiOBHm_Chr3g0474511
rosa_laevigata	RLG00000033994
rosa_multiflora	Rmu_sc0000662.1_g000018 Rmu_sc0003575.1_g000006 Rmu_sc0022428.1_g000002 Rmu_sc0034830.1_g000001 Rmu_sc0040437.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186040
rosa_rugosa	Rorug07G0320900
rosa_samantha	Rh2AG320400 Rh2CG308600 Rh2DG348200 Rh3BG221700 Rh3CG216400 Rh3CG361800 Rh3DG217200 Rh5BG072300 Rh5BG163500 Rh7AG255900 Rh7BG441900 Rh7CG272300
rosa_wichuraiana	Rw1G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	323, 653
AccII	CGCG	3 cut(s)	441, 516, 695
AclI	AACGTT	1 cut(s)	540
AclWI	GGATC	5 cut(s)	5, 371, 657, 689, 1109
AcoI	YGGCCR	1 cut(s)	621
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	2 cut(s)	707, 797
AfiI	CCNNNNNNNGG	3 cut(s)	320, 464, 672
AflIII	ACRYGT	1 cut(s)	549
AjiI	CACGTC	2 cut(s)	550, 808
AjnI	CCWGG	1 cut(s)	483
AjuI	GAANNNNNNNTTGG	2 cut(s)	734, 766
AluBI	AGCT	4 cut(s)	391, 639, 973, 1076
AluI	AGCT	4 cut(s)	391, 639, 973, 1076
Alw26I	GTCTC	2 cut(s)	36, 497
AlwI	GGATC	5 cut(s)	5, 371, 657, 689, 1109
AoxI	GGCC	5 cut(s)	424, 474, 486, 582, 621
ApeKI	GCWGC	3 cut(s)	191, 194, 913
ArsI	GACNNNNNNTTYG	3 cut(s)	717, 749, 1125
AspLEI	GCGC	2 cut(s)	326, 697
AspS9I	GGNCC	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	523
AsuNHI	GCTAGC	1 cut(s)	1072
BaeGI	GKGCMC	2 cut(s)	942, 956
BanI	GGYRCC	2 cut(s)	323, 653
BanII	GRGCYC	1 cut(s)	615
BauI	CACGAG	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	203, 206, 900
BccI	CCATC	4 cut(s)	80, 98, 224, 877
BceAI	ACGGC	5 cut(s)	69, 461, 575, 608, 667
BcgI	CGANNNNNNTGC	4 cut(s)	442, 476, 1003, 1037
BciT130I	CCWGG	1 cut(s)	485
BcoDI	GTCTC	2 cut(s)	36, 497
BfaI	CTAG	3 cut(s)	678, 1073, 1137
BfoI	RGCGCY	1 cut(s)	327
BisI	GCNGC	6 cut(s)	192, 195, 346, 585, 588, 914
BlsI	GCNGC	6 cut(s)	193, 196, 347, 586, 589, 915
Bme1390I	CCNGG	1 cut(s)	485
BmgBI	CACGTC	2 cut(s)	550, 808
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	5 cut(s)	325, 645, 655, 894, 1004
BmrFI	CCNGG	1 cut(s)	485
BmrI	ACTGGG	2 cut(s)	618, 1065
BmsI	GCATC	1 cut(s)	462
BmtI	GCTAGC	1 cut(s)	1076
BmuI	ACTGGG	2 cut(s)	618, 1065
BpiI	GAAGAC	1 cut(s)	105
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
BpmI	CTGGAG	2 cut(s)	60, 371
Bpu10I	CCTNAGC	1 cut(s)	1067
BsaHI	GRCGYC	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	3 cut(s)	51, 579, 1038
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 269, 299
Bsc4I	CCNNNNNNNGG	3 cut(s)	320, 464, 672
Bse118I	RCCGGY	3 cut(s)	326, 422, 464
Bse1I	ACTGG	6 cut(s)	108, 367, 613, 731, 920, 1060
Bse3DI	GCAATG	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	3 cut(s)	51, 579, 1038
BseGI	GGATG	7 cut(s)	29, 90, 164, 216, 281, 453, 888
BseLI	CCNNNNNNNGG	3 cut(s)	320, 464, 672
BseMI	GCAATG	1 cut(s)	33
BseNI	ACTGG	6 cut(s)	108, 367, 613, 731, 920, 1060
BseRI	GAGGAG	9 cut(s)	148, 151, 166, 223, 254, 286, 293, 383, 863
BseSI	GKGCMC	2 cut(s)	942, 956
BseXI	GCAGC	3 cut(s)	203, 206, 900
BseYI	CCCAGC	2 cut(s)	560, 635
Bsh1236I	CGCG	3 cut(s)	441, 516, 695
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	5 cut(s)	426, 476, 488, 584, 623
BshNI	GGYRCC	2 cut(s)	323, 653
BsiEI	CGRYCG	1 cut(s)	117
BsiSI	CCGG	4 cut(s)	321, 327, 423, 465
BslFI	GGGAC	2 cut(s)	428, 538
BslI	CCNNNNNNNGG	3 cut(s)	320, 464, 672
BsmAI	GTCTC	2 cut(s)	36, 497
BsmFI	GGGAC	2 cut(s)	428, 538
BsnI	GGCC	5 cut(s)	426, 476, 488, 584, 623
Bso31I	GGTCTC	1 cut(s)	497
Bsp1286I	GDGCHC	3 cut(s)	615, 942, 956
Bsp1407I	TGTACA	1 cut(s)	795
Bsp143I	GATC	5 cut(s)	10, 376, 662, 681, 1114
BspANI	GGCC	5 cut(s)	426, 476, 488, 584, 623
BspFNI	CGCG	3 cut(s)	441, 516, 695
BspLI	GGNNCC	5 cut(s)	325, 645, 655, 894, 1004
BspOI	GCTAGC	1 cut(s)	1076
BspPI	GGATC	5 cut(s)	5, 371, 657, 689, 1109
BspT107I	GGYRCC	2 cut(s)	323, 653
BspTNI	GGTCTC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	33
BsrFI	RCCGGY	3 cut(s)	326, 422, 464
BsrGI	TGTACA	1 cut(s)	795
BsrI	ACTGG	6 cut(s)	108, 367, 613, 731, 920, 1060
BssAI	RCCGGY	3 cut(s)	326, 422, 464
BssECI	CCNNGG	3 cut(s)	51, 579, 1038
BssMI	GATC	5 cut(s)	10, 376, 662, 681, 1114
BssNI	GRCGYC	1 cut(s)	324
BssSI	CACGAG	1 cut(s)	500
BssT1I	CCWWGG	2 cut(s)	579, 1038
Bst2BI	CACGAG	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	3 cut(s)	521, 535, 658
BstACI	GRCGYC	1 cut(s)	324
BstAUI	TGTACA	1 cut(s)	795
BstC8I	GCNNGC	5 cut(s)	328, 350, 424, 466, 1074
BstDEI	CTNAG	1 cut(s)	1067
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	7 cut(s)	29, 90, 164, 216, 281, 453, 888
BstFNI	CGCG	3 cut(s)	441, 516, 695
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	2 cut(s)	326, 697
BstKTI	GATC	5 cut(s)	13, 379, 665, 684, 1117
BstMAI	GTCTC	2 cut(s)	36, 497
BstMBI	GATC	5 cut(s)	10, 376, 662, 681, 1114
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	5 cut(s)	494, 951, 992, 1049, 1082
BstNI	CCWGG	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	483
BstSLI	GKGCMC	2 cut(s)	942, 956
BstUI	CGCG	3 cut(s)	441, 516, 695
BstV1I	GCAGC	3 cut(s)	203, 206, 900
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	2 cut(s)	662, 1114
BstYI	RGATCY	2 cut(s)	662, 1114
BsuRI	GGCC	5 cut(s)	426, 476, 488, 584, 623
BtgI	CCRYGG	1 cut(s)	51
BtrI	CACGTC	2 cut(s)	550, 808
BtsCI	GGATG	7 cut(s)	29, 90, 164, 216, 281, 453, 888
BtsI	GCAGTG	2 cut(s)	249, 940
BtsIMutI	CAGTG	3 cut(s)	249, 606, 940
Cac8I	GCNNGC	5 cut(s)	328, 350, 424, 466, 1074
CfoI	GCGC	2 cut(s)	326, 697
Cfr10I	RCCGGY	3 cut(s)	326, 422, 464
Cfr13I	GGNCC	1 cut(s)	487
CseI	GACGC	1 cut(s)	430
Csp6I	GTAC	2 cut(s)	706, 796
CviAII	CATG	3 cut(s)	903, 1025, 1081
CviQI	GTAC	2 cut(s)	706, 796
DdeI	CTNAG	1 cut(s)	1067
DinI	GGCGCC	1 cut(s)	325
DpnI	GATC	5 cut(s)	12, 378, 664, 683, 1116
DpnII	GATC	5 cut(s)	10, 376, 662, 681, 1114
EaeI	YGGCCR	1 cut(s)	621
EciI	GGCGGA	1 cut(s)	202
Eco130I	CCWWGG	2 cut(s)	579, 1038
Eco24I	GRGCYC	1 cut(s)	615
Eco31I	GGTCTC	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	483
EcoT14I	CCWWGG	2 cut(s)	579, 1038
EcoT22I	ATGCAT	1 cut(s)	1026
EcoT38I	GRGCYC	1 cut(s)	615
EgeI	GGCGCC	1 cut(s)	325
EheI	GGCGCC	1 cut(s)	325
ErhI	CCWWGG	2 cut(s)	579, 1038
FaeI	CATG	3 cut(s)	906, 1028, 1084
FaiI	YATR	8 cut(s)	629, 721, 904, 1011, 1022, 1026, 1082, 1151
FaqI	GGGAC	2 cut(s)	428, 538
FatI	CATG	3 cut(s)	902, 1024, 1080
FauI	CCCGC	2 cut(s)	446, 521
Fnu4HI	GCNGC	6 cut(s)	192, 195, 346, 585, 588, 914
FokI	GGATG	7 cut(s)	16, 77, 151, 203, 268, 440, 895
FriOI	GRGCYC	1 cut(s)	615
Fsp4HI	GCNGC	6 cut(s)	192, 195, 346, 585, 588, 914
FspBI	CTAG	3 cut(s)	678, 1073, 1137
GlaI	GCGC	2 cut(s)	325, 696
GluI	GCNGC	6 cut(s)	192, 195, 346, 585, 588, 914
GsaI	CCCAGC	2 cut(s)	564, 639
GsuI	CTGGAG	2 cut(s)	60, 371
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	5 cut(s)	426, 476, 488, 584, 623
HapII	CCGG	4 cut(s)	321, 327, 423, 465
HgaI	GACGC	1 cut(s)	430
HhaI	GCGC	2 cut(s)	326, 697
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	3 cut(s)	906, 1028, 1084
Hin6I	GCGC	2 cut(s)	324, 695
HinP1I	GCGC	2 cut(s)	324, 695
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	5 cut(s)	155, 317, 737, 1091, 1140
HpaII	CCGG	4 cut(s)	321, 327, 423, 465
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	3 cut(s)	376, 662, 963
Hpy188III	TCNNGA	6 cut(s)	380, 500, 545, 595, 782, 1137
Hpy8I	GTNNAC	1 cut(s)	538
Hpy99I	CGWCG	4 cut(s)	422, 521, 551, 689
HpyAV	CCTTC	2 cut(s)	373, 872
HpyCH4III	ACNGT	3 cut(s)	521, 535, 658
HpyCH4IV	ACGT	4 cut(s)	540, 549, 807, 1125
HpyCH4V	TGCA	2 cut(s)	916, 1024
HpyF10VI	GCNNNNNNNGC	5 cut(s)	494, 951, 992, 1049, 1082
HpyF3I	CTNAG	1 cut(s)	1067
HpySE526I	ACGT	4 cut(s)	540, 549, 807, 1125
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	3 cut(s)	906, 1028, 1084
HspAI	GCGC	2 cut(s)	324, 695
KasI	GGCGCC	1 cut(s)	323
KroI	GCCGGC	3 cut(s)	326, 422, 464
KroNI	GCCGGC	3 cut(s)	328, 424, 466
Kzo9I	GATC	5 cut(s)	10, 376, 662, 681, 1114
LmnI	GCTCC	2 cut(s)	396, 1002
Lsp1109I	GCAGC	3 cut(s)	203, 206, 900
LweI	GCATC	1 cut(s)	462
MaeI	CTAG	3 cut(s)	678, 1073, 1137
MaeII	ACGT	4 cut(s)	540, 549, 807, 1125
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	5 cut(s)	12, 378, 664, 683, 1116
MboI	GATC	5 cut(s)	10, 376, 662, 681, 1114
MboII	GAAGA	1 cut(s)	110
MflI	RGATCY	2 cut(s)	662, 1114
MhlI	GDGCHC	3 cut(s)	615, 942, 956
MluCI	AATT	3 cut(s)	701, 908, 1044
Mly113I	GGCGCC	1 cut(s)	324
MlyI	GAGTC	5 cut(s)	149, 311, 746, 1085, 1149
MmeI	TCCRAC	1 cut(s)	1142
Mph1103I	ATGCAT	1 cut(s)	1026
MreI	CGCCGGCG	1 cut(s)	326
MroNI	GCCGGC	3 cut(s)	326, 422, 464
MslI	CAYNNNNRTG	1 cut(s)	1148
MspA1I	CMGCKG	1 cut(s)	348
MspI	CCGG	4 cut(s)	321, 327, 423, 465
MspR9I	CCNGG	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	485
MvnI	CGCG	3 cut(s)	441, 516, 695
MwoI	GCNNNNNNNGC	5 cut(s)	494, 951, 992, 1049, 1082
NaeI	GCCGGC	3 cut(s)	328, 424, 466
NarI	GGCGCC	1 cut(s)	324
NdeII	GATC	5 cut(s)	10, 376, 662, 681, 1114
NgoMIV	GCCGGC	3 cut(s)	326, 422, 464
NheI	GCTAGC	1 cut(s)	1072
NlaIII	CATG	3 cut(s)	906, 1028, 1084
NlaIV	GGNNCC	5 cut(s)	325, 645, 655, 894, 1004
NmuCI	GTSAC	1 cut(s)	529
NsiI	ATGCAT	1 cut(s)	1026
PcsI	WCGNNNNNNNCGW	3 cut(s)	468, 525, 546
PdiI	GCCGGC	3 cut(s)	328, 424, 466
PkrI	GCNGC	6 cut(s)	193, 196, 347, 586, 589, 915
PleI	GAGTC	5 cut(s)	149, 311, 745, 1085, 1148
PluTI	GGCGCC	1 cut(s)	327
PpsI	GAGTC	5 cut(s)	149, 311, 745, 1085, 1148
Psp1406I	AACGTT	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	483
PspFI	CCCAGC	2 cut(s)	560, 635
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	5 cut(s)	325, 645, 655, 894, 1004
PspPI	GGNCC	1 cut(s)	487
PsuI	RGATCY	2 cut(s)	662, 1114
RsaI	GTAC	2 cut(s)	707, 797
RsaNI	GTAC	2 cut(s)	706, 796
RseI	CAYNNNNRTG	1 cut(s)	1148
SatI	GCNGC	6 cut(s)	192, 195, 346, 585, 588, 914
Sau3AI	GATC	5 cut(s)	10, 376, 662, 681, 1114
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	5 cut(s)	149, 311, 746, 1085, 1149
ScrFI	CCNGG	1 cut(s)	485
SduI	GDGCHC	3 cut(s)	615, 942, 956
SfaNI	GCATC	1 cut(s)	462
SfoI	GGCGCC	1 cut(s)	325
SgrAI	CRCCGGYG	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	1148
Sse9I	AATT	3 cut(s)	701, 908, 1044
SspDI	GGCGCC	1 cut(s)	323
SspMI	CTAG	3 cut(s)	678, 1073, 1137
StyD4I	CCNGG	1 cut(s)	483
StyI	CCWWGG	2 cut(s)	579, 1038
TaaI	ACNGT	3 cut(s)	521, 535, 658
TaiI	ACGT	4 cut(s)	543, 552, 810, 1128
TaqI	TCGA	4 cut(s)	113, 471, 735, 1089
TasI	AATT	3 cut(s)	701, 908, 1044
TatI	WGTACW	2 cut(s)	705, 795
TauI	GCSGC	3 cut(s)	348, 587, 590
TscAI	CASTG	3 cut(s)	256, 613, 947
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	3 cut(s)	191, 194, 913
Tsp45I	GTSAC	1 cut(s)	529
TspGWI	ACGGA	3 cut(s)	517, 685, 801
TspRI	CASTG	3 cut(s)	256, 613, 947
XbaI	TCTAGA	1 cut(s)	1136
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1045
XspI	CTAG	3 cut(s)	678, 1073, 1137
Zsp2I	ATGCAT	1 cut(s)	1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.