Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007533

Physical Location & Seq

Genomic Coordinates Reverse (-)

45865506 .. 45880809

Gene Structure 15304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG320400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGACATCGATTCCGCCGACCAATTTGGTCGTCAATCTTGGGTTCTGGGCGAGGTTTTTCATGGTCCAGTTGGGTATTGGGGGATTCAAGGAATTTGTAGGATGCTGGCCAGTGCCAACCCCAACCACCTCTCACGAGAAGGGTCAAGGAGATATAGTGGCCAAAATAAGGTCGTTCCGACATAGCTTCGCGGAGAGGAGCAAGGAGAGGCTGCTCTCAAGAAAAGGGTACTCGGATTTCGGGCTCAACAGCTCAGAATGCGGTGATGAGAGAGTCAAGTGCGGCTGGTTTGGGAGAATGTCTGATGGGTTGGTCAACTTTTGCAACAACGTTCAGGAGGTTTCTGTTAAACTGTATCAAATGGGCCGCTTCGATACTCGGAAAGCTTACTTCGCCGATGGGCTTGTCGCTGGCGATTGTGTCACTGCTTATATTTTTCAAGGACCCCTCAAAGATGCTAGCCAATATTCCATCTGGGCGATTCTCACCGTTGTCGTCATTTTCGAATTCAGCAAAGGTGCGATGTTGAACAAAGGGTTTAATCGTGCTTTGGGGACAATTCCGGCTGGAGGGCTAGCTCTAGGTGTAGTAGAGTTGGCTGCAATGGTCGGAAGTTGGCAGGAGGTTGTGATTGTAGTCAATATTTTCATAGCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0009987 GO:0010118 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0090332 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

219

Amino Acids

24.05

Weight (kDa)

8.83

Isoelectric Point (pI)

22.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	120 - 218	5.6e-28	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007533)

Species	Orthologous Gene IDs
malus_domestica	MD16G1045200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0333421 RchiOBHm_Chr2g0126501 RchiOBHm_Chr3g0474511
rosa_laevigata	RLG00000033994
rosa_multiflora	Rmu_sc0000662.1_g000018 Rmu_sc0003575.1_g000006 Rmu_sc0022428.1_g000002 Rmu_sc0034830.1_g000001 Rmu_sc0040437.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186040
rosa_rugosa	Rorug07G0320900
rosa_samantha	Rh2AG320400 Rh2CG308600 Rh2DG348200 Rh3BG221700 Rh3CG216400 Rh3CG361800 Rh3DG217200 Rh5BG072300 Rh5BG163500 Rh7AG255900 Rh7BG441900 Rh7CG272300
rosa_wichuraiana	Rw1G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	191
AciI	CCGC	5 cut(s)	14, 191, 261, 282, 367
AclI	AACGTT	1 cut(s)	330
AcoI	YGGCCR	2 cut(s)	107, 159
AcsI	RAATTY	2 cut(s)	92, 506
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	2 cut(s)	168, 569
AgsI	TTSAA	3 cut(s)	88, 440, 529
AluBI	AGCT	4 cut(s)	186, 252, 386, 578
AluI	AGCT	4 cut(s)	186, 252, 386, 578
AoxI	GGCC	3 cut(s)	107, 159, 364
ApeKI	GCWGC	2 cut(s)	211, 599
ApoI	RAATTY	2 cut(s)	92, 506
AspS9I	GGNCC	3 cut(s)	64, 364, 443
AsuHPI	GGTGA	2 cut(s)	275, 478
AsuII	TTCGAA	1 cut(s)	504
AsuNHI	GCTAGC	2 cut(s)	458, 574
AvaII	GGWCC	2 cut(s)	64, 443
BalI	TGGCCA	2 cut(s)	109, 161
BanII	GRGCYC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	198, 586
BccI	CCATC	3 cut(s)	299, 392, 479
BfaI	CTAG	3 cut(s)	459, 575, 581
BisI	GCNGC	4 cut(s)	212, 283, 367, 600
BlsI	GCNGC	4 cut(s)	213, 284, 368, 601
Bme18I	GGWCC	2 cut(s)	64, 443
BmgT120I	GGNCC	3 cut(s)	64, 364, 443
BmiI	GGNNCC	1 cut(s)	445
BmsI	GCATC	2 cut(s)	92, 445
BmtI	GCTAGC	2 cut(s)	462, 578
BpmI	CTGGAG	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	202
Bsa29I	ATCGAT	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 569
Bse1I	ACTGG	2 cut(s)	67, 110
Bse3DI	GCAATG	1 cut(s)	609
BseCI	ATCGAT	1 cut(s)	8
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	2 cut(s)	168, 569
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	2 cut(s)	67, 110
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	198, 586
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	3 cut(s)	109, 161, 366
BshVI	ATCGAT	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	563
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	2 cut(s)	168, 569
BsmFI	GGGAC	1 cut(s)	568
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	3 cut(s)	109, 161, 366
Bsp119I	TTCGAA	1 cut(s)	504
Bsp1286I	GDGCHC	1 cut(s)	246
BspACI	CCGC	5 cut(s)	14, 191, 261, 282, 367
BspANI	GGCC	3 cut(s)	109, 161, 366
BspCNI	CTCAG	1 cut(s)	266
BspDI	ATCGAT	1 cut(s)	8
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	445
BspOI	GCTAGC	2 cut(s)	462, 578
BspT104I	TTCGAA	1 cut(s)	504
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	2 cut(s)	67, 110
BssSI	CACGAG	1 cut(s)	134
Bst2BI	CACGAG	1 cut(s)	134
Bst4CI	ACNGT	2 cut(s)	354, 490
BstBI	TTCGAA	1 cut(s)	504
BstC8I	GCNNGC	4 cut(s)	107, 412, 460, 576
BstDEI	CTNAG	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	107
BstFNI	CGCG	1 cut(s)	191
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 392
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	198, 586
Bsu15I	ATCGAT	1 cut(s)	8
BsuRI	GGCC	3 cut(s)	109, 161, 366
BsuTUI	ATCGAT	1 cut(s)	8
BtgZI	GCGATG	1 cut(s)	536
BtsCI	GGATG	1 cut(s)	107
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	2 cut(s)	117, 423
Cac8I	GCNNGC	4 cut(s)	107, 412, 460, 576
Cfr13I	GGNCC	3 cut(s)	64, 364, 443
ClaI	ATCGAT	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	1 cut(s)	61
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	1 cut(s)	253
EaeI	YGGCCR	2 cut(s)	107, 159
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	2 cut(s)	64, 443
EcoO109I	RGGNCCY	1 cut(s)	443
EcoRI	GAATTC	1 cut(s)	506
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	1 cut(s)	64
FaiI	YATR	5 cut(s)	62, 155, 183, 432, 650
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	212, 283, 367, 600
FokI	GGATG	1 cut(s)	114
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	4 cut(s)	212, 283, 367, 600
FspBI	CTAG	3 cut(s)	459, 575, 581
GluI	GCNGC	4 cut(s)	212, 283, 367, 600
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	3 cut(s)	109, 161, 366
HapII	CCGG	1 cut(s)	563
Hin1II	CATG	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	4 cut(s)	10, 84, 273, 481
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	2 cut(s)	275, 478
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	6 cut(s)	179, 235, 256, 304, 381, 611
Hpy188III	TCNNGA	3 cut(s)	134, 219, 335
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	2 cut(s)	354, 490
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	2 cut(s)	324, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 392
HpyF3I	CTNAG	1 cut(s)	253
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	198
Lsp1109I	GCAGC	2 cut(s)	198, 586
LweI	GCATC	2 cut(s)	92, 445
MaeI	CTAG	3 cut(s)	459, 575, 581
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	421
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	2 cut(s)	109, 161
MluCI	AATT	4 cut(s)	22, 92, 506, 558
MluNI	TGGCCA	2 cut(s)	109, 161
MlyI	GAGTC	1 cut(s)	282
MmeI	TCCRAC	2 cut(s)	202, 589
MnlI	CCTC	8 cut(s)	45, 139, 189, 201, 331, 458, 563, 616
Mox20I	TGGCCA	2 cut(s)	109, 161
MscI	TGGCCA	2 cut(s)	109, 161
MseI	TTAA	2 cut(s)	348, 540
Msp20I	TGGCCA	2 cut(s)	109, 161
MspI	CCGG	1 cut(s)	563
Mva1269I	GAATGC	1 cut(s)	263
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	258, 392
NheI	GCTAGC	2 cut(s)	458, 574
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	421
NspV	TTCGAA	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 501
PctI	GAATGC	1 cut(s)	263
PfeI	GAWTC	3 cut(s)	10, 84, 481
PkrI	GCNGC	4 cut(s)	213, 284, 368, 601
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	443
Psp1406I	AACGTT	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	443
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	3 cut(s)	64, 364, 443
PspPPI	RGGWCCY	1 cut(s)	443
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	348, 540
SatI	GCNGC	4 cut(s)	212, 283, 367, 600
Sau96I	GGNCC	3 cut(s)	64, 364, 443
SchI	GAGTC	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	2 cut(s)	92, 445
SfuI	TTCGAA	1 cut(s)	504
SinI	GGWCC	2 cut(s)	64, 443
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	4 cut(s)	22, 92, 506, 558
SsiI	CCGC	5 cut(s)	14, 191, 261, 282, 367
SspI	AATATT	2 cut(s)	467, 643
SspMI	CTAG	3 cut(s)	459, 575, 581
TaaI	ACNGT	2 cut(s)	354, 490
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	3 cut(s)	8, 372, 504
TasI	AATT	4 cut(s)	22, 92, 506, 558
TauI	GCSGC	2 cut(s)	285, 369
TfiI	GAWTC	3 cut(s)	10, 84, 481
Tru1I	TTAA	2 cut(s)	348, 540
Tru9I	TTAA	2 cut(s)	348, 540
TscAI	CASTG	2 cut(s)	117, 430
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	2 cut(s)	211, 599
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	2 cut(s)	49, 637
TspRI	CASTG	2 cut(s)	117, 430
VpaK11BI	GGWCC	2 cut(s)	64, 443
XapI	RAATTY	2 cut(s)	92, 506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
XspI	CTAG	3 cut(s)	459, 575, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.