Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007533

Physical Location & Seq

Genomic Coordinates Reverse (-)

20043702 .. 20044004

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG216400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAGAGTCAAGTGCGGCTGGTTTGGGAAAATGTCCGATGGGTTGGTCGAGTTTTACAACAGCGTTCAGGAGGTTTCGGTTAAACTGTATCAAATGGGCCGCTCCGATCCTCGGAAAGCTTACTTCGCCGCCAAGATGGGCTTGTCGCTGGCGATTGTGTCACTGCTCATATTTTTCAAGGAGCCCCTCAAAGATGCTAGCCAATATTCCATCTTGGCGATTCTCACCGTTGTCGTCGTTTTCGAATTCAGCATAGGTATTGTTACTATACTGATCTCAATCTCATTTCTGGTTTCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0009987 GO:0010118 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0090332 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

100

Amino Acids

11.15

Weight (kDa)

9.17

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	31 - 86	1.2e-20	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007533)

Species	Orthologous Gene IDs
malus_domestica	MD16G1045200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0333421 RchiOBHm_Chr2g0126501 RchiOBHm_Chr3g0474511
rosa_laevigata	RLG00000033994
rosa_multiflora	Rmu_sc0000662.1_g000018 Rmu_sc0003575.1_g000006 Rmu_sc0022428.1_g000002 Rmu_sc0034830.1_g000001 Rmu_sc0040437.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186040
rosa_rugosa	Rorug07G0320900
rosa_samantha	Rh2AG320400 Rh2CG308600 Rh2DG348200 Rh3BG221700 Rh3CG216400 Rh3CG361800 Rh3DG217200 Rh5BG072300 Rh5BG163500 Rh7AG255900 Rh7BG441900 Rh7CG272300
rosa_wichuraiana	Rw1G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	102
AciI	CCGC	3 cut(s)	15, 100, 129
AclWI	GGATC	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	178
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	217
AsuII	TTCGAA	1 cut(s)	243
AsuNHI	GCTAGC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	186
BccI	CCATC	3 cut(s)	32, 130, 218
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	3 cut(s)	16, 100, 129
BlsI	GCNGC	3 cut(s)	17, 101, 130
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	183
BmsI	GCATC	1 cut(s)	184
BmtI	GCTAGC	1 cut(s)	201
Bpu14I	TTCGAA	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse8I	GATNNNNATC	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	110
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	111
BsnI	GGCC	1 cut(s)	99
Bsp119I	TTCGAA	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	106, 273
BspACI	CCGC	3 cut(s)	15, 100, 129
BspANI	GGCC	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	183
BspOI	GCTAGC	1 cut(s)	201
BspPI	GGATC	1 cut(s)	101
BspT104I	TTCGAA	1 cut(s)	243
BsrBI	CCGCTC	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	2 cut(s)	106, 273
Bst4CI	ACNGT	2 cut(s)	87, 229
BstBI	TTCGAA	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	150, 199
BstKTI	GATC	2 cut(s)	109, 276
BstMBI	GATC	2 cut(s)	106, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	161
Cac8I	GCNNGC	2 cut(s)	150, 199
Cfr13I	GGNCC	1 cut(s)	97
CviJI	RGCY	6 cut(s)	18, 99, 119, 141, 184, 201
CviKI_1	RGCY	6 cut(s)	18, 99, 119, 141, 184, 201
DpnI	GATC	2 cut(s)	108, 275
DpnII	GATC	2 cut(s)	106, 273
Eco24I	GRGCYC	1 cut(s)	186
EcoRI	GAATTC	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	186
FaiI	YATR	3 cut(s)	170, 254, 269
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
Fnu4HI	GCNGC	3 cut(s)	16, 100, 129
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	3 cut(s)	16, 100, 129
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	3 cut(s)	16, 100, 129
HaeIII	GGCC	1 cut(s)	99
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	2 cut(s)	6, 220
HphI	GGTGA	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	37, 106, 114
Hpy188III	TCNNGA	1 cut(s)	68
Hpy99I	CGWCG	1 cut(s)	239
HpyCH4III	ACNGT	2 cut(s)	87, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
Kzo9I	GATC	2 cut(s)	106, 273
LmnI	GCTCC	2 cut(s)	107, 181
LpnPI	CCDG	4 cut(s)	4, 53, 134, 275
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	159, 262
MalI	GATC	2 cut(s)	108, 275
MbiI	CCGCTC	1 cut(s)	102
MboI	GATC	2 cut(s)	106, 273
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	15
MnlI	CCTC	3 cut(s)	64, 120, 197
MseI	TTAA	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeII	GATC	2 cut(s)	106, 273
NheI	GCTAGC	1 cut(s)	197
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	159
NspV	TTCGAA	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	3 cut(s)	17, 101, 130
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	3 cut(s)	16, 100, 129
Sau3AI	GATC	2 cut(s)	106, 273
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	3 cut(s)	75, 121, 259
SfaNI	GCATC	1 cut(s)	184
SfuI	TTCGAA	1 cut(s)	243
Sse9I	AATT	1 cut(s)	245
SsiI	CCGC	3 cut(s)	15, 100, 129
SspI	AATATT	1 cut(s)	206
SspMI	CTAG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	87, 229
TaqI	TCGA	2 cut(s)	48, 243
TasI	AATT	1 cut(s)	245
TauI	GCSGC	3 cut(s)	18, 102, 131
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	159
Tsp45I	GTSAC	1 cut(s)	159
TspRI	CASTG	1 cut(s)	168
XapI	RAATTY	1 cut(s)	245
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.