Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007533

Physical Location & Seq

Genomic Coordinates Reverse (-)

33145121 .. 33147591

Gene Structure 2471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G014850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCGGCCAAAATTAGGTCGTTCCGGCACAGCTTCGCAGAGAGGAACAAGGAGAGGCTACTCTCACGAAAAGGGTACTCGGATTTCGGGCTCAACAGCTCGGAATGCGGCGATGAGAGAGTCAAGTGCGGCTGGTTTGGGAGAATGTCTGATGGGTTGGTCAACTTTTGCAACAACGTTCAGGAGGTGTCTATGGGCTTGTCGCTGGCGATTGTGTCACTGCTCATATTTTTCAAGAAGCCCCTCAAAGATGCTAGCCAATATTCCATCTGGGCAATTCTCACCGTTGTCATCGTTTTCGAATTCAGCATAGGTGCGACGTTGAACAAAGGGTTTAATCGTGCTTTGGGGACAATTTCAGCTGGAGGGCTAGCTCTAGGTGTAGCAGAGTTGGCTGTAATGGTCGGAAGTTGGCAGGAGGTTGTGATTGTAGTCAATATTTTCATAGCAGGTTTTCTTGCTAGCTATATCAAGCTTTATTCGCCAATGAAGACTTATCAATACGGATTTCAAGTGTTCTTGTTGACATACAGTATAGTTTTAGTATCCGGGTTGGGTGCTGCTGTCTGTTTGGTTATAAACATATGTATACTTCCCATCTGGGCAGGGGAGGATCTCCACAAGCTGGTGGTGAAAAATTTCAAGGATGTTGCTACTTCTTTGGAAGGTGTTGTTAATGGATATCTGCAATGTGTTGAGTACGAGAGAATTCCTTCGAAAATTCTCACATACCAAGCTTCTGATGAACCATTGTATAATGGATATAGAGCTACTATACAATCTTCAACCCAAGAGGAATCAAGAAGGCTCCCACATGGATATGCGCCAATTTGCTTTCTTTTTAACACTTGTCTATTTTTGGATGTAGATGAAGTTGACATTTATATATATTTATATGTAAATTCAATAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0009987 GO:0010118 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0090332 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

304

Amino Acids

33.86

Weight (kDa)

6.82

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	63 - 267	4.5e-82	Aluminium activated malate transporter
FUSC_2	PF13515	87 - 185	2.1e-09	Fusaric acid resistance protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007533)

Species	Orthologous Gene IDs
malus_domestica	MD16G1045200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0333421 RchiOBHm_Chr2g0126501 RchiOBHm_Chr3g0474511
rosa_laevigata	RLG00000033994
rosa_multiflora	Rmu_sc0000662.1_g000018 Rmu_sc0003575.1_g000006 Rmu_sc0022428.1_g000002 Rmu_sc0034830.1_g000001 Rmu_sc0040437.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186040
rosa_rugosa	Rorug07G0320900
rosa_samantha	Rh2AG320400 Rh2CG308600 Rh2DG348200 Rh3BG221700 Rh3CG216400 Rh3CG361800 Rh3DG217200 Rh5BG072300 Rh5BG163500 Rh7AG255900 Rh7BG441900 Rh7CG272300
rosa_wichuraiana	Rw1G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	578
Acc36I	ACCTGC	1 cut(s)	440
AccB7I	CCANNNNNTGG	1 cut(s)	625
AccI	GTMKAC	1 cut(s)	589
AciI	CCGC	3 cut(s)	5, 108, 129
AclI	AACGTT	1 cut(s)	177
AclWI	GGATC	1 cut(s)	621
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	5 cut(s)	302, 637, 708, 720, 901
AfaI	GTAC	2 cut(s)	77, 701
AfiI	CCNNNNNNNGG	2 cut(s)	15, 625
AgsI	TTSAA	6 cut(s)	235, 325, 512, 643, 786, 906
AluBI	AGCT	9 cut(s)	33, 99, 362, 374, 465, 475, 625, 737, 770
AluI	AGCT	9 cut(s)	33, 99, 362, 374, 465, 475, 625, 737, 770
AlwI	GGATC	1 cut(s)	621
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	5 cut(s)	302, 637, 708, 720, 901
Asp700I	GAANNNNTTC	2 cut(s)	638, 712
AspLEI	GCGC	1 cut(s)	826
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	2 cut(s)	274, 643
AsuII	TTCGAA	2 cut(s)	300, 716
AsuNHI	GCTAGC	3 cut(s)	254, 370, 461
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	497
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	3 cut(s)	146, 275, 605
BciVI	GTATCC	1 cut(s)	556
BcnI	CCSGG	1 cut(s)	550
BfaI	CTAG	4 cut(s)	255, 371, 377, 462
BfuAI	ACCTGC	1 cut(s)	440
BfuI	GTATCC	1 cut(s)	556
BisI	GCNGC	4 cut(s)	6, 109, 130, 561
BlsI	GCNGC	4 cut(s)	7, 110, 131, 562
Bme1390I	CCNGG	1 cut(s)	550
BmiI	GGNNCC	1 cut(s)	809
BmrFI	CCNGG	1 cut(s)	550
BmsI	GCATC	1 cut(s)	241
BmtI	GCTAGC	3 cut(s)	258, 374, 465
BpiI	GAAGAC	1 cut(s)	497
BpmI	CTGGAG	1 cut(s)	384
Bpu14I	TTCGAA	2 cut(s)	300, 716
BpuMI	CCSGG	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 625
Bse3DI	GCAATG	1 cut(s)	695
BseGI	GGATG	2 cut(s)	652, 868
BseLI	CCNNNNNNNGG	2 cut(s)	15, 625
BseMI	GCAATG	1 cut(s)	695
BseXI	GCAGC	1 cut(s)	547
BshFI	GGCC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	25, 549
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	2 cut(s)	15, 625
BsmFI	GGGAC	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	8
Bsp119I	TTCGAA	2 cut(s)	300, 716
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	613
BspACI	CCGC	3 cut(s)	5, 108, 129
BspANI	GGCC	1 cut(s)	8
BspLI	GGNNCC	1 cut(s)	809
BspMI	ACCTGC	1 cut(s)	440
BspOI	GCTAGC	3 cut(s)	258, 374, 465
BspPI	GGATC	1 cut(s)	621
BspT104I	TTCGAA	2 cut(s)	300, 716
BsrDI	GCAATG	1 cut(s)	695
BssMI	GATC	1 cut(s)	613
BssNAI	GTATAC	1 cut(s)	590
Bst1107I	GTATAC	1 cut(s)	590
Bst4CI	ACNGT	2 cut(s)	286, 533
BstBI	TTCGAA	2 cut(s)	300, 716
BstC8I	GCNNGC	4 cut(s)	207, 256, 372, 463
BstF5I	GGATG	2 cut(s)	652, 868
BstHHI	GCGC	1 cut(s)	826
BstKTI	GATC	1 cut(s)	616
BstMBI	GATC	1 cut(s)	613
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 392, 481
BstSCI	CCNGG	1 cut(s)	548
BstV1I	GCAGC	1 cut(s)	547
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BstZ17I	GTATAC	1 cut(s)	590
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	1 cut(s)	8
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	652, 868
BtsI	GCAGTG	1 cut(s)	218
BtsIMutI	CAGTG	1 cut(s)	218
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	4 cut(s)	207, 256, 372, 463
CfoI	GCGC	1 cut(s)	826
Csp6I	GTAC	2 cut(s)	76, 700
CviAII	CATG	1 cut(s)	815
CviQI	GTAC	2 cut(s)	76, 700
DpnI	GATC	1 cut(s)	615
DpnII	GATC	1 cut(s)	613
EaeI	YGGCCR	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	683
EcoRI	GAATTC	2 cut(s)	302, 708
EcoRV	GATATC	1 cut(s)	683
EcoT38I	GRGCYC	1 cut(s)	93
FaeI	CATG	1 cut(s)	818
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	1 cut(s)	814
FauNDI	CATATG	1 cut(s)	584
FblI	GTMKAC	1 cut(s)	589
Fnu4HI	GCNGC	4 cut(s)	6, 109, 130, 561
FokI	GGATG	2 cut(s)	659, 875
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	4 cut(s)	6, 109, 130, 561
FspBI	CTAG	4 cut(s)	255, 371, 377, 462
GlaI	GCGC	1 cut(s)	825
GluI	GCNGC	4 cut(s)	6, 109, 130, 561
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	2 cut(s)	25, 549
HhaI	GCGC	1 cut(s)	826
Hin1II	CATG	1 cut(s)	818
Hin6I	GCGC	1 cut(s)	824
HinP1I	GCGC	1 cut(s)	824
HincII	GTYRAC	3 cut(s)	163, 525, 877
HindII	GTYRAC	3 cut(s)	163, 525, 877
HindIII	AAGCTT	2 cut(s)	473, 735
HinfI	GANTC	2 cut(s)	120, 797
HpaII	CCGG	2 cut(s)	25, 549
HphI	GGTGA	2 cut(s)	274, 643
Hpy166II	GTNNAC	4 cut(s)	163, 525, 590, 877
Hpy188I	TCNGA	5 cut(s)	82, 103, 151, 407, 742
Hpy188III	TCNNGA	4 cut(s)	66, 182, 235, 801
Hpy8I	GTNNAC	4 cut(s)	163, 525, 590, 877
Hpy99I	CGWCG	1 cut(s)	322
HpyAV	CCTTC	3 cut(s)	659, 723, 798
HpyCH4III	ACNGT	2 cut(s)	286, 533
HpyCH4IV	ACGT	2 cut(s)	177, 320
HpyCH4V	TGCA	2 cut(s)	171, 688
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 392, 481
HpySE526I	ACGT	2 cut(s)	177, 320
Hsp92II	CATG	1 cut(s)	818
HspAI	GCGC	1 cut(s)	824
Kzo9I	GATC	1 cut(s)	613
LmnI	GCTCC	1 cut(s)	813
Lsp1109I	GCAGC	1 cut(s)	547
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	4 cut(s)	255, 371, 377, 462
MaeII	ACGT	2 cut(s)	177, 320
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	1 cut(s)	615
MboI	GATC	1 cut(s)	613
MboII	GAAGA	2 cut(s)	502, 774
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	8 cut(s)	36, 48, 178, 254, 359, 412, 604, 787
MroXI	GAANNNNTTC	2 cut(s)	638, 712
MseI	TTAA	4 cut(s)	336, 675, 843, 913
MslI	CAYNNNNRTG	1 cut(s)	819
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	2 cut(s)	25, 549
MspR9I	CCNGG	1 cut(s)	550
Mva1269I	GAATGC	1 cut(s)	110
MwoI	GCNNNNNNNGC	3 cut(s)	105, 392, 481
NciI	CCSGG	1 cut(s)	550
NdeI	CATATG	1 cut(s)	584
NdeII	GATC	1 cut(s)	613
NheI	GCTAGC	3 cut(s)	254, 370, 461
NlaIII	CATG	1 cut(s)	818
NlaIV	GGNNCC	1 cut(s)	809
NmuCI	GTSAC	1 cut(s)	216
NspV	TTCGAA	2 cut(s)	300, 716
PctI	GAATGC	1 cut(s)	110
PdmI	GAANNNNTTC	2 cut(s)	638, 712
PfeI	GAWTC	1 cut(s)	797
PflMI	CCANNNNNTGG	1 cut(s)	625
PkrI	GCNGC	4 cut(s)	7, 110, 131, 562
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PsiI	TTATAA	1 cut(s)	578
Psp1406I	AACGTT	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	809
PsuI	RGATCY	1 cut(s)	613
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	2 cut(s)	77, 701
RsaNI	GTAC	2 cut(s)	76, 700
RseI	CAYNNNNRTG	1 cut(s)	819
SaqAI	TTAA	4 cut(s)	336, 675, 843, 913
SatI	GCNGC	4 cut(s)	6, 109, 130, 561
Sau3AI	GATC	1 cut(s)	613
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	550
SduI	GDGCHC	1 cut(s)	93
SfaNI	GCATC	1 cut(s)	241
SfuI	TTCGAA	2 cut(s)	300, 716
SmiMI	CAYNNNNRTG	1 cut(s)	819
SsiI	CCGC	3 cut(s)	5, 108, 129
SspI	AATATT	2 cut(s)	263, 439
SspMI	CTAG	4 cut(s)	255, 371, 377, 462
StyD4I	CCNGG	1 cut(s)	548
TaaI	ACNGT	2 cut(s)	286, 533
TaiI	ACGT	2 cut(s)	180, 323
TaqI	TCGA	2 cut(s)	300, 716
TauI	GCSGC	3 cut(s)	8, 111, 132
TfiI	GAWTC	1 cut(s)	797
Tru1I	TTAA	4 cut(s)	336, 675, 843, 913
Tru9I	TTAA	4 cut(s)	336, 675, 843, 913
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	4 cut(s)	433, 503, 759, 885
TspGWI	ACGGA	1 cut(s)	519
TspRI	CASTG	1 cut(s)	225
Van91I	CCANNNNNTGG	1 cut(s)	625
XapI	RAATTY	5 cut(s)	302, 637, 708, 720, 901
XmiI	GTMKAC	1 cut(s)	589
XmnI	GAANNNNTTC	2 cut(s)	638, 712
XspI	CTAG	4 cut(s)	255, 371, 377, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.